View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9548_high_3 (Length: 301)
Name: NF9548_high_3
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9548_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 1703168 - 1702916
Alignment:
| Q |
1 |
caaataatattttagtaaagcaaatatattattcataaattgaatgtacacgagactattaaaaacaaatttaaattagtattttggtggttcttttatt |
100 |
Q |
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| T |
1703168 |
caaataatattttagtaaaacaaatatatcattcaaaaattgaatgtacacgagactattaaaaacaaatttaaattagtattttggtggttcttttatt |
1703069 |
T |
|
| Q |
101 |
acaagagaaaattttattatgggactagctaaacacgcatgatatgtatagatgccaagagctaggaaacaaataacaatgtcccaaggtaataccaggt |
200 |
Q |
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||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1703068 |
acaagagaaaattttattaagggaatagctaaacacacatgatatgtatagatgccaagagctaggaaacaaataacaatgtcccaaggtaataccaggt |
1702969 |
T |
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| Q |
201 |
tcgggaggttctgcaatatatgtatcgaagaaaagtctattaactcaattcaa |
253 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1702968 |
tcaggaggttctgcaatatatgtatagaagaaaagtctattaactcaattcaa |
1702916 |
T |
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