View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9548_high_4 (Length: 262)
Name: NF9548_high_4
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9548_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 35527800 - 35528043
Alignment:
| Q |
3 |
cagagagattcccattggatttcgatatatttaaaactccggttaatccaagtacaataactggtaacggtgtttacaagtttcagttgaatgagattgt |
102 |
Q |
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| T |
35527800 |
cagagagattcccattggatttcgatatatttaaaactccggttaatccaagtacaataaccggtaacggtgtttacacgtttcagttgaatgaggttgt |
35527899 |
T |
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| Q |
103 |
tgatgtgatactacaaaatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggt |
202 |
Q |
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| T |
35527900 |
tgatgtgatactacaaaatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggt |
35527999 |
T |
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| Q |
203 |
gaagggaaatttgaaccaggtgttcatcagaaaagtttgaattt |
246 |
Q |
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| T |
35528000 |
gaagggaaatttgaaccaggtgttcatcagaaaagtttgaattt |
35528043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 35509603 - 35509846
Alignment:
| Q |
3 |
cagagagattcccattggatttcgatatatttaaaactccggttaatccaagtacaataactggtaacggtgtttacaagtttcagttgaatgagattgt |
102 |
Q |
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| T |
35509603 |
cagagagatttccaatggattatgacatatttaaaaatccagtgaatccaaacacaactaccggcaatggtgtttacacgttccagttgaatgaggttgt |
35509702 |
T |
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| Q |
103 |
tgatgtgatactacaaaatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggt |
202 |
Q |
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| T |
35509703 |
tgatgtgatactacaaaatgcaaaccagttaaatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggt |
35509802 |
T |
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| Q |
203 |
gaagggaaatttgaaccaggtgttcatcagaaaagtttgaattt |
246 |
Q |
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| T |
35509803 |
gaagggagatttagaccaggagttgatgagagaagtttcaattt |
35509846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 35542314 - 35542508
Alignment:
| Q |
19 |
ggatttcgatatatttaaaactccggttaatccaagtacaataactggtaacggtgtttacaagtttcagttgaatgagattgttgatgtgatactacaa |
118 |
Q |
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| T |
35542314 |
ggattacgacatatttaaaaatccagttaatccaaatacaactaccggtaacggtgtttacatgtttaataaagatgagattgttgatgtgatactacag |
35542413 |
T |
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| Q |
119 |
aatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggtgaagggaaatt |
213 |
Q |
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| T |
35542414 |
aatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggagaagggaaatt |
35542508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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