View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9548_low_1 (Length: 657)

Name: NF9548_low_1
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9548_low_1
NF9548_low_1
[»] chr2 (4 HSPs)
chr2 (18-649)||(2356193-2356824)
chr2 (555-649)||(22722123-22722217)
chr2 (596-649)||(23747522-23747575)
chr2 (426-462)||(43586027-43586063)
[»] chr5 (1 HSPs)
chr5 (426-462)||(30080523-30080559)
[»] chr1 (2 HSPs)
chr1 (426-462)||(24462292-24462328)
chr1 (433-462)||(18946056-18946085)
[»] chr7 (1 HSPs)
chr7 (426-462)||(5937443-5937479)
[»] chr6 (2 HSPs)
chr6 (426-462)||(10031571-10031607)
chr6 (426-462)||(19369818-19369854)
[»] chr4 (1 HSPs)
chr4 (426-462)||(28663493-28663529)


Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Complemental strand, 2356824 - 2356193
Alignment:
Q  18 ggaagagactcgaccactccatctcattcccctttctccggtaaccatttctcttaatcacattacttaatcacaatttcatttatagtttctgagctgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2356824 ggaagagactcgaccactccatctcattcccctttctccggtaaccatttctcttaatcacattacttaatcacaatttcatttgtagtttctgagctgt 2356725  T
Q  118 ttgaattcagattgttaaaactatatacattatacgtgttgttgatgtgaaattgatctctgcatgatgcatagattttttcttattattctgagtatag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356724 ttgaattcagattgttaaaactatatacattatacgtgttgttgatgtgaaattgatctctgcatgatgcatagattttttcttattattctgagtatag 2356625  T
Q  218 attgtaaaaacgacgatgtaggttaaattttgttccaatttcattttgnnnnnnncgttacctattgctttaattctttgaatcatgatattcttcatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  2356624 attgtaaaaacgacgatgtaggttaaattttgttccaatttcattttgtttttttcgttacctattgctttaattctttgaatcatgatattcttcatct 2356525  T
Q  318 ttagtaatgatttcacagttgaataatgtcttgacttcaggcttttagttctaggcatattttagttaagaaatcttttccacggacaccggacacgacg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356524 ttagtaatgatttcacagttgaataatgtcttgacttcaggcttttagttctaggcatattttagttaagaaatcttttccacggacaccggacacgacg 2356425  T
Q  418 caacactcacactgatcaaattttgagaaaatgacataattcaattatttcaatgtaattacatgtgtcggnnnnnnntgtaattcaaattttgnnnnnn 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||          
T  2356424 caacactcacactgatcaaattttgagaaaatgacataattcaattatttcaatttaattacatgtgtcggaaaaaaatgtaattcaaattttgaaaaaa 2356325  T
Q  518 ntgaattgatcttaacttgtttagaatgaggccattattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttcct 617  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356324 atgaattgatcttaacttgtttagaatgaggccattattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttcct 2356225  T
Q  618 tcattgattttatctccactttcctctctgct 649  Q
    ||||||||||||||||||||||||||||||||    
T  2356224 tcattgattttatctccactttcctctctgct 2356193  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 555 - 649
Target Start/End: Complemental strand, 22722217 - 22722123
Alignment:
Q  555 ttgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctgct 649  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| || |||||||||||||||    
T  22722217 ttgtaggtataaatggagtctgtttgatgagaaatgcatggaaagaggatcaacgtccatctttcattgattttatgtcaactttcctctctgct 22722123  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 596 - 649
Target Start/End: Original strand, 23747522 - 23747575
Alignment:
Q  596 aaagaggatcaacatccttccttcattgattttatctccactttcctctctgct 649  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  23747522 aaagaggatcaacgtccatccttcattgattttatctccactttcctctctgct 23747575  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 43586063 - 43586027
Alignment:
Q  426 acactgatcaaattttgagaaaatgacataattcaat 462  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaat 43586027  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 30080559 - 30080523
Alignment:
Q  426 acactgatcaaattttgagaaaatgacataattcaat 462  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30080559 acactgataaaattttgagaaaatgacataattcaat 30080523  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 24462328 - 24462292
Alignment:
Q  426 acactgatcaaattttgagaaaatgacataattcaat 462  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24462328 acactgatcaaattttgaaaaaatgacataattcaat 24462292  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 462
Target Start/End: Complemental strand, 18946085 - 18946056
Alignment:
Q  433 tcaaattttgagaaaatgacataattcaat 462  Q
    ||||||||||||||||||||||||||||||    
T  18946085 tcaaattttgagaaaatgacataattcaat 18946056  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 5937479 - 5937443
Alignment:
Q  426 acactgatcaaattttgagaaaatgacataattcaat 462  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaat 5937443  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 10031571 - 10031607
Alignment:
Q  426 acactgatcaaattttgagaaaatgacataattcaat 462  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  10031571 acaccgataaaattttgagaaaatgacataattcaat 10031607  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 19369818 - 19369854
Alignment:
Q  426 acactgatcaaattttgagaaaatgacataattcaat 462  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  19369818 acacggataaaattttgagaaaatgacataattcaat 19369854  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 28663493 - 28663529
Alignment:
Q  426 acactgatcaaattttgagaaaatgacataattcaat 462  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  28663493 acacggataaaattttgagaaaatgacataattcaat 28663529  T

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