View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9548_low_14 (Length: 240)

Name: NF9548_low_14
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9548_low_14
NF9548_low_14
[»] chr3 (3 HSPs)
chr3 (18-240)||(49385941-49386163)
chr3 (141-210)||(7256560-7256629)
chr3 (39-99)||(49385851-49385912)
[»] chr5 (6 HSPs)
chr5 (39-228)||(39576060-39576250)
chr5 (39-228)||(39572054-39572244)
chr5 (142-220)||(2326640-2326718)
chr5 (143-228)||(4145570-4145655)
chr5 (39-112)||(2326536-2326609)
chr5 (159-206)||(3561835-3561882)
[»] chr1 (3 HSPs)
chr1 (79-210)||(46445711-46445843)
chr1 (39-208)||(46672284-46672454)
chr1 (39-218)||(5054388-5054569)
[»] chr8 (5 HSPs)
chr8 (144-228)||(9846723-9846805)
chr8 (148-220)||(9902656-9902728)
chr8 (43-228)||(9841686-9841872)
chr8 (52-113)||(9860448-9860509)
chr8 (148-210)||(9860353-9860415)
[»] chr6 (1 HSPs)
chr6 (145-210)||(112940-113005)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 49385941 - 49386163
Alignment:
Q  18 acaagtctagtttcattgtctataatttccttaacaacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactataagtgg 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  49385941 acaagtctagtttcattgtcaataatttccttaacaacattcatcacaatcacttcctctcttgttatccagtaaagatcatttcctccactataagtgg 49386040  T
Q  118 tttctataacaaacaccaattaaggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49386041 tttctataacaaacaccaattaaggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaa 49386140  T
Q  218 gcacctgaaactaaacagacgtc 240  Q
    |||||||||||||||||||||||    
T  49386141 gcacctgaaactaaacagacgtc 49386163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 7256629 - 7256560
Alignment:
Q  141 ggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacata 210  Q
    ||||||||||||||||| |||| |||||||||||||||| || |||||||||||| |||||| |||||||    
T  7256629 ggggagcttcttttctagctatttctttccatgagttatctactccaattcttagtacatagtaaacata 7256560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 49385912 - 49385851
Alignment:
Q  39 ataatttccttaacaacattcatcacaatcacttcctctc-ttgttatccaataaagatcat 99  Q
    |||||||||||| ||| |||||||||||||||||  |||| |||||||| | ||||||||||    
T  49385912 ataatttccttatcaatattcatcacaatcactttttctctttgttatctagtaaagatcat 49385851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 39576250 - 39576060
Alignment:
Q  39 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactataagt-ggtttctataacaaacaccaat 137  Q
    |||||||||||| |||||| ||||||||||||||||||  |||||||||| ||||||||||  |||||||||||| | |||  ||  ||  |  |||  |    
T  39576250 ataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaagatcattgcctccactataaattggtcgctgaaaagagaacccct 39576151  T
Q  138 taaggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagcacctgaaac 228  Q
    |||||||||||||||||||| |||| |||||||| |||||||  ||||||||||| ||  ||||||||||||| || ||||||||||||||    
T  39576150 taaggggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagcacctgaaac 39576060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 39572244 - 39572054
Alignment:
Q  39 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactat-aagtggtttc-tataaca-aacacca 135  Q
    |||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||  |||||||||| || ||||| | || || | ||| ||     
T  39572244 ataatttccttatcaacatccatcacaatcacttcctcatttgttatccaataaagatcattacctccactataaattggttgcttaaaagagaactccc 39572145  T
Q  136 attaaggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagcacctgaaac 228  Q
    |  || ||| |||||||||||| |||| |||| |||||||||||  | |||||||||||| |||||||||||||| || ||| ||||||||||    
T  39572144 a--aaagggtgcttcttttctagctatttcttaccatgagttatcaactccaattcttagaacatagaaaacataccaaaaaacacctgaaac 39572054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 2326640 - 2326718
Alignment:
Q  142 gggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagca 220  Q
    |||||||||||||||| ||||||| |||||||  | || | ||||||||||||||||||| |||||||| |||||||||    
T  2326640 gggagcttcttttctaactatctcattccatgtataatcttttccaattcttagcacataaaaaacataccagaaagca 2326718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 4145655 - 4145570
Alignment:
Q  143 ggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagcacctgaaac 228  Q
    ||||||||||||| | ||||||||||||||||| ||| || ||||||||| ||||||||||| ||||| ||  ||||||| |||||    
T  4145655 ggagcttcttttcaagctatctctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaac 4145570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 2326536 - 2326609
Alignment:
Q  39 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactata 112  Q
    |||||||||||  |||||||||||||||||||||||| |  ||||||||| ||||||||||   ||||||||||    
T  2326536 ataatttccttgtcaacattcatcacaatcacttccttttctgttatccagtaaagatcattgtctccactata 2326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 3561835 - 3561882
Alignment:
Q  159 ctatctctttccatgagttatgtattccaattcttagcacatagaaaa 206  Q
    ||||||||||||| ||||||| |||||||||| |||||||||| ||||    
T  3561835 ctatctctttccaagagttatctattccaatttttagcacataaaaaa 3561882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 210
Target Start/End: Complemental strand, 46445843 - 46445711
Alignment:
Q  79 ttgttatccaataaagatcatctcctccactataa-gtggtttctataacaaacaccaattaaggggagcttcttttctacctatctctttccatgagtt 177  Q
    |||||||||| ||||||||||  |||||||||||| |||||| | ||   ||| |||||| | | ||||||||||||||| |||||||||||||||| ||    
T  46445843 ttgttatccagtaaagatcattgcctccactataaagtggttgccatgtaaaaaaccaatcacgaggagcttcttttctagctatctctttccatgaatt 46445744  T
Q  178 atgtattccaattcttagcacatagaaaacata 210  Q
    || |||||||||||||| |||||||||||||||    
T  46445743 atctattccaattcttaacacatagaaaacata 46445711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 46672284 - 46672454
Alignment:
Q  39 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactataa-gtggtttctataacaaacaccaat 137  Q
    ||||||||  || |||||| ||||||||| ||||| ||  ||||||| || ||||||||||  |||||||||||| ||| || | ||   |||  || ||    
T  46672284 ataatttctctatcaacatccatcacaattacttcatcatttgttattcagtaaagatcattgcctccactataaagtgattgccatggaaaatgccgat 46672383  T
Q  138 taaggggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaaca 208  Q
    || || |||||||||||||| |||||||||||||||| |||| ||||| |||||| |||||||||||||||    
T  46672384 tatggcgagcttcttttctagctatctctttccatgaattatctattctaattctcagcacatagaaaaca 46672454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 39 - 218
Target Start/End: Original strand, 5054388 - 5054569
Alignment:
Q  39 ataatttccttaacaacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactataa-gtggtttctataacaaacaccaat 137  Q
    |||||||||||  |||||| ||||||||||||||  ||  |||||||||||||||||||||  |||||||||||| ||  || |   || |||  ||  |    
T  5054388 ataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaagatcattgcctccactataaagtatttgccgaaaaaaattccctt 5054487  T
Q  138 taaggggagcttctttt-ctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaag 218  Q
     ||||||||||| |||| ||| ||||||| ||||| ||||||| |||||  ||||||||||||||||||||||| |||||||    
T  5054488 gaaggggagcttttttttctagctatctcgttccacgagttatctattcttattcttagcacatagaaaacataccagaaag 5054569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 9846805 - 9846723
Alignment:
Q  144 gagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagcacctgaaac 228  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||    
T  9846805 gagcttcttttctagttatctctttccatgagttatctattccaattcttagcac--agaaaacataccagaaagcacctgaaac 9846723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 9902728 - 9902656
Alignment:
Q  148 ttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagca 220  Q
    |||||||||| |||||||| |||||||||||| |||||| |||||||||| |||||||||||| || ||||||    
T  9902728 ttcttttctagctatctctctccatgagttatctattccgattcttagcatatagaaaacataccaaaaagca 9902656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 228
Target Start/End: Complemental strand, 9841872 - 9841686
Alignment:
Q  43 tttccttaacaacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactataa-gtggtttctataacaaacaccaattaag 141  Q
    |||||||  |||||| ||||||||||||||  ||   ||||||||| ||||||||||  |||||||||||| | ||   | |||| |||  ||||  ||     
T  9841872 tttccttgtcaacatccatcacaatcactttgtcatatgttatccagtaaagatcattgcctccactataaagcgggaaccataagaaatgccaacgaat 9841773  T
Q  142 gggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagcacctgaaac 228  Q
    ||| ||||||||| || |||||||||||||||  |||| |||||| ||||| ||||||||||||||||| ||  ||||||| |||||    
T  9841772 gggggcttcttttttagctatctctttccatgcattatctattccgattctcagcacatagaaaacataccaacaagcacccgaaac 9841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 9860509 - 9860448
Alignment:
Q  52 caacattcatcacaatcacttcctctcttgttatccaataaagatcatctcctccactataa 113  Q
    |||||| ||| ||||||||||||| | ||||||||||||||| |||||  ||||||||||||    
T  9860509 caacatccatgacaatcacttccttttttgttatccaataaatatcattgcctccactataa 9860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 9860415 - 9860353
Alignment:
Q  148 ttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacata 210  Q
    |||||||||| ||||| | ||||||||   || ||||||||||||| ||||||||||||||||    
T  9860415 ttcttttctagctatcacgttccatgaaccatctattccaattctttgcacatagaaaacata 9860353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 112940 - 113005
Alignment:
Q  145 agcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacata 210  Q
    ||||| ||||||| ||||||||||||||| |||||  | ||||||| |||| || |||||||||||    
T  112940 agctttttttctagctatctctttccatgtgttatcaactccaattgttaggacgtagaaaacata 113005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University