View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9548_low_18 (Length: 202)
Name: NF9548_low_18
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9548_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 54074206 - 54074038
Alignment:
| Q |
19 |
ctaatagcgagggagcaacctttacgtgcttgcaccatcttcctttattcttccttccttcaatactaattaaaattataaactaatactacttcttcta |
118 |
Q |
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| T |
54074206 |
ctaatagcgagggagcaacctttacgtgcttgcaccatcttcctttattcttccttccttcaatactaattaaaattataaactaatactacttcttcta |
54074107 |
T |
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| Q |
119 |
acagattttaaagggagtttaattgtgacacacattctattaaaatttaaacatgattaatgatctatg |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074106 |
acagattttaaagggagtttaattgtgacacacattctattaaaatttaaacatgattaatgatctatg |
54074038 |
T |
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