View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9548_low_4 (Length: 372)

Name: NF9548_low_4
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9548_low_4
NF9548_low_4
[»] chr7 (10 HSPs)
chr7 (76-359)||(522060-522343)
chr7 (77-359)||(45300122-45300404)
chr7 (18-78)||(518501-518561)
chr7 (18-78)||(4581921-4581981)
chr7 (18-78)||(16730292-16730352)
chr7 (18-78)||(45296498-45296558)
chr7 (18-78)||(37468068-37468128)
chr7 (18-78)||(25676348-25676408)
chr7 (18-71)||(581469-581522)
chr7 (18-71)||(581735-581788)
[»] chr5 (10 HSPs)
chr5 (76-359)||(10646119-10646402)
chr5 (18-78)||(669742-669802)
chr5 (18-78)||(2851214-2851274)
chr5 (18-78)||(9616760-9616820)
chr5 (18-78)||(30985158-30985218)
chr5 (18-78)||(10642534-10642594)
chr5 (18-78)||(15295696-15295756)
chr5 (18-78)||(21119447-21119507)
chr5 (18-78)||(35858745-35858805)
chr5 (26-78)||(41308190-41308242)
[»] chr4 (9 HSPs)
chr4 (76-359)||(49316742-49317025)
chr4 (76-359)||(36666388-36666671)
chr4 (18-78)||(26496867-26496927)
chr4 (18-78)||(36668068-36668128)
chr4 (18-78)||(49318418-49318478)
chr4 (18-60)||(34150879-34150921)
chr4 (89-140)||(37544973-37545024)
chr4 (15-71)||(20254626-20254681)
chr4 (152-226)||(37545015-37545089)
[»] chr3 (9 HSPs)
chr3 (76-359)||(33049378-33049661)
chr3 (18-78)||(14713-14773)
chr3 (18-78)||(21913107-21913167)
chr3 (18-78)||(40997294-40997354)
chr3 (18-78)||(41950147-41950207)
chr3 (18-78)||(50901981-50902041)
chr3 (18-78)||(33047952-33048012)
chr3 (19-64)||(45691835-45691880)
chr3 (18-78)||(5409894-5409954)
[»] chr2 (9 HSPs)
chr2 (76-359)||(12371957-12372240)
chr2 (76-359)||(9304427-9304710)
chr2 (77-362)||(31920043-31920328)
chr2 (18-78)||(9302925-9302985)
chr2 (18-78)||(12391644-12391704)
chr2 (18-78)||(37426078-37426138)
chr2 (18-78)||(42453410-42453470)
chr2 (19-78)||(35466933-35466992)
chr2 (18-78)||(45326203-45326263)
[»] chr8 (11 HSPs)
chr8 (76-359)||(4595354-4595637)
chr8 (76-359)||(21141040-21141323)
chr8 (241-359)||(31960902-31961020)
chr8 (18-78)||(4599168-4599228)
chr8 (18-78)||(30887065-30887125)
chr8 (18-78)||(23615578-23615638)
chr8 (18-78)||(34852705-34852765)
chr8 (18-78)||(31960640-31960700)
chr8 (18-78)||(34740669-34740729)
chr8 (18-71)||(2378237-2378290)
chr8 (24-78)||(26758754-26758808)
[»] chr6 (11 HSPs)
chr6 (151-359)||(30598571-30598779)
chr6 (147-359)||(34783235-34783447)
chr6 (76-155)||(30596308-30596387)
chr6 (18-78)||(2523979-2524039)
chr6 (18-78)||(10839621-10839681)
chr6 (18-78)||(25087054-25087114)
chr6 (18-78)||(29918892-29918952)
chr6 (18-78)||(30592750-30592810)
chr6 (18-78)||(34783567-34783627)
chr6 (24-78)||(5173320-5173374)
chr6 (18-78)||(7807631-7807691)
[»] chr1 (4 HSPs)
chr1 (77-362)||(50373467-50373752)
chr1 (18-78)||(50579801-50579861)
chr1 (18-78)||(25699932-25699992)
chr1 (18-78)||(33112741-33112801)
[»] scaffold0365 (1 HSPs)
scaffold0365 (291-359)||(863-931)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 76 - 359
Target Start/End: Original strand, 522060 - 522343
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  522060 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 522159  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  522160 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 522259  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  522260 ttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatggaaactgtct 522343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 77 - 359
Target Start/End: Original strand, 45300122 - 45300404
Alignment:
Q  77 aatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaac 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45300122 aatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgttgcaatacgggaaggaaatgaaataacgagagaac 45300221  T
Q  177 gtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtgt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45300222 gtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtgaatgtgacccaaattcattgcctaagatatatcgtgt 45300321  T
Q  277 tgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45300322 tgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatggaaactgtct 45300404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 518501 - 518561
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  518501 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 518561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 4581981 - 4581921
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4581981 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 4581921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 16730292 - 16730352
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16730292 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 16730352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 45296498 - 45296558
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45296498 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 45296558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 37468128 - 37468068
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37468128 atctaccactcttatttattagatgtacaaaccgctcttactactactttgttgttgtcaa 37468068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 25676408 - 25676348
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||| || |||||||||||| ||||||||||| ||| |||||||||||||||| ||||||    
T  25676408 atctatcattcttatttgttacatgtacaaaccactcctactactactttgttgctgtcaa 25676348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 581469 - 581522
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttg 71  Q
    ||||| ||||||||||||||| ||||||||| |  || ||||||||||||||||    
T  581469 atctatcactcttatttgttacatgtacaaatcattcctactactactttgttg 581522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 581735 - 581788
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttg 71  Q
    ||||| ||||||||||||||| |||||||||||  || |||||||| |||||||    
T  581735 atctatcactcttatttgttacatgtacaaaccattcctactactattttgttg 581788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 76 - 359
Target Start/End: Original strand, 10646119 - 10646402
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646119 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 10646218  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10646219 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 10646318  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10646319 ttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatggaaactgtct 10646402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 669742 - 669802
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  669742 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 669802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 2851274 - 2851214
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2851274 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 2851214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 9616820 - 9616760
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9616820 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 9616760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 30985158 - 30985218
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30985158 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 30985218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 10642534 - 10642594
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10642534 atctaccactcttatttgttagatgtacaaaccgcttttactactactttgttgttgtcaa 10642594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 15295696 - 15295756
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15295696 atctaccactcttatttgttagatgtacaaaccgttcttactactactttgttgttgtcaa 15295756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 21119507 - 21119447
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21119507 atctaccactcttatttgttagatgtacaaaccgctcttactactattttgttgttgtcaa 21119447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 35858805 - 35858745
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35858805 atctaccactcttatttattagatgtacaaaccgctcttactactactttgttgttgtcaa 35858745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 41308190 - 41308242
Alignment:
Q  26 ctcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||||||||||| |||||||||||  || ||||| |||||||||| ||||||    
T  41308190 ctcttatttgttatatgtacaaaccattcctactaatactttgttgctgtcaa 41308242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 76 - 359
Target Start/End: Complemental strand, 49317025 - 49316742
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49317025 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 49316926  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49316925 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 49316826  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49316825 ttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatggaaactgtct 49316742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 76 - 359
Target Start/End: Complemental strand, 36666671 - 36666388
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36666671 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 36666572  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36666571 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 36666472  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  36666471 ttgtcatgaaagatgtagacatacttagaatgattattcagtgtccacccaaagcacgcaaaacagtcataatggaaactgtct 36666388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 26496867 - 26496927
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26496867 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 26496927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 36668128 - 36668068
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36668128 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 36668068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 49318478 - 49318418
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49318478 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 49318418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 34150879 - 34150921
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttacta 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34150879 atctaccactcttatttgttagatgtacaaaccgctcttacta 34150921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 37544973 - 37545024
Alignment:
Q  89 gaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatg 140  Q
    |||||||||||| ||||| |  ||||||||||||||||||||||||||||||    
T  37544973 gaacttaaagagacaatgcacatggttgcagaggcactcagagaaggaaatg 37545024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20254681 - 20254626
Alignment:
Q  15 atcatctaccactcttatttgttagatgtacaaaccgctcttactactactttgttg 71  Q
    |||||||| |||||||||| |||| |||| |||||| ||||||||||||||||||||    
T  20254681 atcatctatcactcttatt-gttacatgttcaaaccactcttactactactttgttg 20254626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 37545015 - 37545089
Alignment:
Q  152 gaaggaaatgaaataacgagagaacgtcataaacacgagttgcctccaatttcaggagaagagacttggaattta 226  Q
    ||||||||||| |||| ||||||||||| |||     ||||||||||||||| ||| ||||| ||||||||||||    
T  37545015 gaaggaaatgacataatgagagaacgtcgtaacttttagttgcctccaattttaggggaagaaacttggaattta 37545089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 76 - 359
Target Start/End: Original strand, 33049378 - 33049661
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33049378 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 33049477  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33049478 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 33049577  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33049578 ttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatggaaactgtct 33049661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 14773 - 14713
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14773 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 14713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 21913167 - 21913107
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21913167 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 21913107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 40997294 - 40997354
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40997294 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 40997354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 41950207 - 41950147
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41950207 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 41950147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 50902041 - 50901981
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50902041 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 50901981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 33047952 - 33048012
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33047952 atctaccactcttatttgttagatgtacaaactgctcttactactactttgttgttgtcaa 33048012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 45691880 - 45691835
Alignment:
Q  19 tctaccactcttatttgttagatgtacaaaccgctcttactactac 64  Q
    |||| ||||||||||||||| ||||||||||| ||| |||||||||    
T  45691880 tctatcactcttatttgttacatgtacaaaccactcctactactac 45691835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 5409894 - 5409954
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||| ||||||||||| ||| || || ||||| ||| |||||||||||||||| ||||||    
T  5409894 atctatcactcttatttattacatctaaaaaccactcctactactactttgttgatgtcaa 5409954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 76 - 359
Target Start/End: Complemental strand, 12372240 - 12371957
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12372240 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 12372141  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12372140 cgtcataaacacgagttgccttcaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattaattgcctaagatatatcgtg 12372041  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12372040 ttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatggaaactgtct 12371957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 76 - 359
Target Start/End: Original strand, 9304427 - 9304710
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9304427 caatgatattattgaacttaaagagtcaatgaaagtgattgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 9304526  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9304527 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgaaccaaattcattgcctaagatatatcgtg 9304626  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| ||| |||||    
T  9304627 ttgtcatgaaagatgtagacatacttagaatgattattcagtgtccacccaaagcaagcaaaacagtcataatggaaaatgtct 9304710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 77 - 362
Target Start/End: Original strand, 31920043 - 31920328
Alignment:
Q  77 aatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaac 176  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  31920043 aatgagattattgaacttaaagagtcaatgaatgtggttgcagaggcactcagagaaggaaatgcagcaatacgcgaaggaaatgaaataacgaaagaac 31920142  T
Q  177 gtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtgt 276  Q
    |||||||||| ||||||||||| |||||||||||||| || ||||||||| || |||||||||| ||||||  | |||||||||||||||||||| |||     
T  31920143 gtcataaacatgagttgcctccgatttcaggagaagaaacctggaatttaataaaggagtgtgggtgtgacaaagattcattgcctaagatatattgtgc 31920242  T
Q  277 tgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtctctg 362  Q
    ||||||||| |||  ||||| ||||| |||||||||||||||||||||  |||| | |||||| || |||||| |||  |||||||    
T  31920243 tgtcatgaaggataaagacaaacttagaatgattcttcagtgtccaccggaagcgcacaaagcggtgataatgcaaatggtctctg 31920328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 9302925 - 9302985
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9302925 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 9302985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 12391704 - 12391644
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12391704 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 12391644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 37426138 - 37426078
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37426138 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 37426078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 42453410 - 42453470
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42453410 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 42453470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 35466933 - 35466992
Alignment:
Q  19 tctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35466933 tctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 35466992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 45326263 - 45326203
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||| ||||||||||||||| ||||||||| | ||| ||||||||| |||||| ||||||    
T  45326263 atctatcactcttatttgttacatgtacaaatcactcctactactacgttgttgctgtcaa 45326203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 76 - 359
Target Start/End: Complemental strand, 4595637 - 4595354
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4595637 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 4595538  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4595537 cgtcataaacacgagttgcctccaatttaaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 4595438  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  4595437 ttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcatgcaaatcagtcataatggaaactgtct 4595354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 76 - 359
Target Start/End: Original strand, 21141040 - 21141323
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaa 175  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||||    
T  21141040 caattatattattgaacttaaagagcaaatgaaagtggttgcagaggcactcagagaaggaaatgttgcaatatgggaagaaaatgaaataatgagagaa 21141139  T
Q  176 cgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtg 275  Q
     ||| |||||||| |||  ||| |||||||| |||||| ||||| ||| || || ||||||||||||||||||||||||||||| ||| ||| ||| |||    
T  21141140 tgtcgtaaacacgggttatctctaatttcagaagaagaaacttgaaatctaataaaggagtgtggatgtgacccaaattcattgtctatgatttattgtg 21141239  T
Q  276 ttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
     | |||||||||||||||||||| ||| ||| ||||||||||||| |||  ||| |||||||||||| |||||| |||| ||||    
T  21141240 ctatcatgaaagatgtagacataattagaataattcttcagtgtctacctgaagaacgcaaagcagtgataatgcaaacggtct 21141323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 31960902 - 31961020
Alignment:
Q  241 atgtgacccaaattcattgcctaagatatatcgtgttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagca 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31960902 atgtgacccaaattcattgcctaagatatatcgtgttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagca 31961001  T
Q  341 gtcataatgtaaactgtct 359  Q
    ||||||||| ||| |||||    
T  31961002 gtcataatggaaattgtct 31961020  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 4599228 - 4599168
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4599228 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 4599168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 30887125 - 30887065
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30887125 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 30887065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 23615578 - 23615638
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23615578 atctaccactcttatttgttagatgtacaaaccgctattactactactttgttgttgtcaa 23615638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 34852705 - 34852765
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34852705 atctaccactcttatttgttagatgtacaaaccgctcttactactattttgttgttgtcaa 34852765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 31960640 - 31960700
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  31960640 atctaccactcttatttgttagatgtataaactgctcttactactactttgttgttgtcaa 31960700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34740729 - 34740669
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||| ||||| ||||||||| ||||||||||| ||| |||||||| ||||||||||||||    
T  34740729 atctatcactcatatttgttacatgtacaaaccactcctactactattttgttgttgtcaa 34740669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 2378290 - 2378237
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttg 71  Q
    ||||| ||||||||||||||| ||||||||||| ||| ||||||| ||||||||    
T  2378290 atctatcactcttatttgttacatgtacaaaccactcctactactgctttgttg 2378237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 26758754 - 26758808
Alignment:
Q  24 cactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||||||||||||| ||||||| ||| ||| |||| ||||||||||| ||||||    
T  26758754 cactcttatttgttacatgtacagaccactcctacttctactttgttgctgtcaa 26758808  T

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Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 151 - 359
Target Start/End: Original strand, 30598571 - 30598779
Alignment:
Q  151 ggaaggaaatgaaataacgagagaacgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgaccca 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30598571 ggaaggaaatgaaataacgagagaacgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgaccca 30598670  T
Q  251 aattcattgcctaagatatatcgtgttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgt 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  30598671 aattcattgcctaagatatatcgtgttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgg 30598770  T
Q  351 aaactgtct 359  Q
    |||||||||    
T  30598771 aaactgtct 30598779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 147 - 359
Target Start/End: Complemental strand, 34783447 - 34783235
Alignment:
Q  147 tacgggaaggaaatgaaataacgagagaacgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtga 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34783447 tacgggaaggaaatgaaataacgagagaacgtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtga 34783348  T
Q  247 cccaaattcattgcctaagatatatcgtgttgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcata 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  34783347 cccaaattcattgcctaagatatatcgtgttgtcatgaaagatgtagacatacttagaatgattcttcagtgtccatccaaagcacgcaaagcagtcata 34783248  T
Q  347 atgtaaactgtct 359  Q
    ||| |||||||||    
T  34783247 atggaaactgtct 34783235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 30596308 - 30596387
Alignment:
Q  76 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaag 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30596308 caatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaag 30596387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 2523979 - 2524039
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2523979 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 2524039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 10839621 - 10839681
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10839621 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 10839681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 25087114 - 25087054
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25087114 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 25087054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29918952 - 29918892
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29918952 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 29918892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 30592750 - 30592810
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30592750 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 30592810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34783627 - 34783567
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34783627 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 34783567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 5173374 - 5173320
Alignment:
Q  24 cactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||||||||||||| ||||||||| | ||  |||||||||||| ||||||||||    
T  5173374 cactcttatttgttacatgtacaaatcacttctactactactttattgttgtcaa 5173320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 7807631 - 7807691
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||| ||||||||||||||| || || ||| | ||| |||||||||||||||| ||||||    
T  7807631 atctatcactcttatttgttacatctaaaaatcactcctactactactttgttgatgtcaa 7807691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 77 - 362
Target Start/End: Complemental strand, 50373752 - 50373467
Alignment:
Q  77 aatgatattattgaacttaaagagtcaatgaaagtggttgcagaggcactcagagaaggaaatgctgcaatacgggaaggaaatgaaataacgagagaac 176  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  50373752 aatgagattattgaacttaaagagtcaatgaatgtggttgcagaggcactcagagaaggaaatgcagcaatacgcgaaggaaatgaaataacgagagaac 50373653  T
Q  177 gtcataaacacgagttgcctccaatttcaggagaagagacttggaatttattagaggagtgtggatgtgacccaaattcattgcctaagatatatcgtgt 276  Q
    |||||||||| ||||||||||| |||||||||||||| || ||||||||| || |||||||||| |||||| || |||||||| ||||||||||| |||     
T  50373652 gtcataaacatgagttgcctccgatttcaggagaagaaacctggaatttaataaaggagtgtgggtgtgacacagattcattgactaagatatattgtgc 50373553  T
Q  277 tgtcatgaaagatgtagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtctctg 362  Q
    ||||||||| |||  ||||| ||||| |||||||||||||||||||||  ||||  ||||||| || |||||| |||  |||||||    
T  50373552 tgtcatgaaggataaagacaaacttagaatgattcttcagtgtccaccggaagcgtgcaaagcggtgataatgcaaatggtctctg 50373467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 50579801 - 50579861
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50579801 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 50579861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 25699932 - 25699992
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||| ||||| ||||||||| || || ||||| ||| |||||||||||||||| ||||||    
T  25699932 atctatcactcctatttgttacatctaaaaaccactcctactactactttgttgatgtcaa 25699992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 33112801 - 33112741
Alignment:
Q  18 atctaccactcttatttgttagatgtacaaaccgctcttactactactttgttgttgtcaa 78  Q
    ||||| ||||||||||||||| || || ||||| ||  |||||||||||||||| ||||||    
T  33112801 atctatcactcttatttgttacatctaaaaaccacttctactactactttgttgatgtcaa 33112741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 931 - 863
Alignment:
Q  291 tagacatacttaaaatgattcttcagtgtccacccaaagcacgcaaagcagtcataatgtaaactgtct 359  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  931 tagacatacttagaatgattcttcaatgtccacccaaagcacgcaaagcagtcataatggaaactgtct 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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