View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9548_low_6 (Length: 342)
Name: NF9548_low_6
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9548_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 27745049 - 27745380
Alignment:
| Q |
1 |
ctcaccgtcctcatcctatgctttgtggctttcagcattgtgtatctttgcaagtattgctttgcaggcattttccatatgtgggccttgcatcgcacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745049 |
ctcaccgtcctcatcctatgctttgtggctttcagcattgtgtatctttgcaagtattgctttgcaggcattttccatatgtgggccttgcatcgcacgg |
27745148 |
T |
|
| Q |
101 |
cctcaggatccctcgttcgtctctcacctgataggtcaccccctagaggactcggcaatacccttataaatggattccccactttcctctactctgatgt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745149 |
cctcaggatccctcgttcgtctctcacctgataggtcaccccctagaggactcaacaatacccttataaatggattccccactttcctctactctgatgt |
27745248 |
T |
|
| Q |
201 |
gaaagaccaccgcaaggaaaaaagttacagcttagaatgtgctatttgcttgctagagttcgaggacgatagcatgcttcgtcttctaactatttgtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745249 |
gaaagaccaccgcaaggaaaaaagttacagcttagaatgtgctatttgcttgctagagttcgaggacgatagcatgcttcgtcttctaactatttgtttc |
27745348 |
T |
|
| Q |
301 |
catgttttccaccaagaatgtatcgacctatg |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
27745349 |
catgttttccaccaagaatgtatcgacctatg |
27745380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 32844729 - 32845060
Alignment:
| Q |
1 |
ctcaccgtcctcatcctatgctttgtggctttcagcattgtgtatctttgcaagtattgctttgcaggcattttccatatgtgggccttgcatcgcacgg |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| ||||| ||| ||||||| | ||||||||||| |||||| |
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| T |
32844729 |
ctcaccgtcctcatcttatgctttgtggctttcagcgttgtgtatgtttgcaagtattgttttgctggctttttccacacttgggccttgcaacgcacga |
32844828 |
T |
|
| Q |
101 |
cctcaggatccctcgttcgtctctcacctgataggtcaccccctagaggactcggcaatacccttataaatggattccccactttcctctactctgatgt |
200 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || | ||||||||||||||||||||| || |
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| T |
32844829 |
cctcaggttccctcgttcgtctctcacctgataggtcaccctctagaggactcgataatacccttctagaaaaattccccactttcctctactcctccgt |
32844928 |
T |
|
| Q |
201 |
gaaagaccaccgcaaggaaaaaagttacagcttagaatgtgctatttgcttgctagagttcgaggacgatagcatgcttcgtcttctaactatttgtttc |
300 |
Q |
| |
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|||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||||| || || ||||||||||||||||| ||||| ||||||| |
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| T |
32844929 |
gaaagaccttcgtaaggaaaagagttatagcttagaatgtgccatttgcttgctagagtttgatgatgatagcatgcttcgtctcctaaccatttgttgt |
32845028 |
T |
|
| Q |
301 |
catgttttccaccaagaatgtatcgacctatg |
332 |
Q |
| |
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||||||||||||||||||||||| |||||||| |
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|
| T |
32845029 |
catgttttccaccaagaatgtattgacctatg |
32845060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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