View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9548_low_9 (Length: 298)

Name: NF9548_low_9
Description: NF9548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9548_low_9
NF9548_low_9
[»] chr8 (19 HSPs)
chr8 (112-267)||(8726966-8727121)
chr8 (112-267)||(39081087-39081242)
chr8 (112-267)||(17880620-17880776)
chr8 (112-264)||(17280013-17280166)
chr8 (112-267)||(37155406-37155562)
chr8 (13-107)||(8734332-8734426)
chr8 (113-265)||(33466043-33466195)
chr8 (218-260)||(45136244-45136286)
chr8 (218-266)||(12240365-12240413)
chr8 (189-261)||(23864426-23864498)
chr8 (214-261)||(1684103-1684150)
chr8 (217-260)||(13660359-13660402)
chr8 (217-260)||(13719002-13719045)
chr8 (218-261)||(23249863-23249906)
chr8 (218-260)||(11221260-11221302)
chr8 (218-260)||(22476360-22476402)
chr8 (218-260)||(22485263-22485305)
chr8 (218-267)||(1562355-1562404)
chr8 (218-267)||(24092079-24092128)
[»] chr3 (18 HSPs)
chr3 (112-267)||(8749161-8749316)
chr3 (112-267)||(9036829-9036984)
chr3 (170-267)||(9031321-9031418)
chr3 (189-262)||(13917969-13918041)
chr3 (218-267)||(215333-215382)
chr3 (145-259)||(13913920-13914038)
chr3 (218-267)||(14406616-14406665)
chr3 (218-267)||(18064193-18064242)
chr3 (215-263)||(11558308-11558356)
chr3 (215-263)||(11567577-11567625)
chr3 (218-257)||(28051268-28051307)
chr3 (218-260)||(13790809-13790851)
chr3 (147-259)||(21094619-21094730)
chr3 (218-260)||(21718913-21718955)
chr3 (218-260)||(24195653-24195695)
chr3 (218-267)||(6580854-6580903)
chr3 (218-259)||(23954544-23954585)
chr3 (220-260)||(44452610-44452650)
[»] chr1 (9 HSPs)
chr1 (112-267)||(45599211-45599366)
chr1 (112-268)||(40313105-40313261)
chr1 (118-265)||(17012127-17012275)
chr1 (112-267)||(52436700-52436856)
chr1 (112-264)||(33062511-33062662)
chr1 (147-257)||(10340075-10340184)
chr1 (145-261)||(17038374-17038494)
chr1 (218-265)||(20841252-20841299)
chr1 (218-267)||(1973435-1973484)
[»] chr7 (34 HSPs)
chr7 (112-267)||(3290564-3290720)
chr7 (112-267)||(14975554-14975711)
chr7 (112-267)||(15405030-15405187)
chr7 (118-267)||(48797506-48797655)
chr7 (124-267)||(7620202-7620347)
chr7 (124-267)||(14984793-14984938)
chr7 (124-267)||(15414404-15414549)
chr7 (112-267)||(11628762-11628915)
chr7 (188-267)||(42782878-42782957)
chr7 (149-267)||(24049572-24049691)
chr7 (182-267)||(11560457-11560542)
chr7 (145-261)||(9564383-9564503)
chr7 (180-260)||(10038677-10038757)
chr7 (219-267)||(30226208-30226256)
chr7 (218-264)||(31269044-31269090)
chr7 (170-247)||(4794527-4794603)
chr7 (218-267)||(9894054-9894103)
chr7 (218-259)||(20588695-20588736)
chr7 (218-267)||(23057328-23057377)
chr7 (218-267)||(26132903-26132952)
chr7 (218-261)||(7508562-7508605)
chr7 (170-257)||(9567036-9567122)
chr7 (218-261)||(23296631-23296674)
chr7 (221-260)||(23957006-23957045)
chr7 (218-257)||(42636379-42636418)
chr7 (218-260)||(4458869-4458911)
chr7 (218-260)||(13455099-13455141)
chr7 (218-260)||(14165295-14165337)
chr7 (218-264)||(14687492-14687538)
chr7 (218-260)||(24902234-24902276)
chr7 (218-267)||(15708293-15708342)
chr7 (218-266)||(10660986-10661034)
chr7 (219-267)||(11406938-11406986)
chr7 (220-260)||(11999009-11999049)
[»] chr6 (26 HSPs)
chr6 (112-267)||(19216075-19216231)
chr6 (112-267)||(16137462-16137619)
chr6 (113-267)||(12444604-12444759)
chr6 (112-267)||(15038469-15038624)
chr6 (124-267)||(15003055-15003199)
chr6 (124-267)||(9384736-9384879)
chr6 (180-267)||(20003259-20003346)
chr6 (124-246)||(32452131-32452252)
chr6 (138-267)||(21323181-21323311)
chr6 (218-260)||(20558431-20558473)
chr6 (218-263)||(18152694-18152739)
chr6 (214-261)||(16309342-16309389)
chr6 (218-260)||(17855324-17855366)
chr6 (218-260)||(20470191-20470233)
chr6 (188-257)||(23882652-23882721)
chr6 (147-260)||(26965488-26965600)
chr6 (218-267)||(28623650-28623699)
chr6 (113-207)||(15004177-15004272)
chr6 (218-261)||(20764982-20765025)
chr6 (218-260)||(9281696-9281738)
chr6 (218-260)||(13195453-13195495)
chr6 (218-260)||(17864413-17864455)
chr6 (218-260)||(19171545-19171587)
chr6 (218-260)||(33665923-33665965)
chr6 (218-267)||(25805575-25805624)
chr6 (218-267)||(29254904-29254953)
[»] chr5 (16 HSPs)
chr5 (112-267)||(7897796-7897952)
chr5 (112-267)||(20498033-20498190)
chr5 (112-267)||(17920666-17920821)
chr5 (141-267)||(26183144-26183271)
chr5 (143-261)||(20740849-20740968)
chr5 (170-260)||(22130790-22130879)
chr5 (143-259)||(13941912-13942026)
chr5 (218-259)||(9422505-9422546)
chr5 (218-267)||(22979868-22979917)
chr5 (218-261)||(9522662-9522705)
chr5 (218-260)||(13734961-13735003)
chr5 (218-260)||(20845782-20845824)
chr5 (218-260)||(22404749-22404791)
chr5 (218-267)||(20714724-20714773)
chr5 (218-267)||(23623999-23624048)
chr5 (218-267)||(26329202-26329251)
[»] scaffold0328 (1 HSPs)
scaffold0328 (126-267)||(16867-17009)
[»] chr4 (20 HSPs)
chr4 (112-267)||(25354517-25354673)
chr4 (112-267)||(19894693-19894841)
chr4 (118-267)||(24143256-24143406)
chr4 (112-249)||(46739146-46739278)
chr4 (113-267)||(23541365-23541520)
chr4 (113-267)||(22555093-22555249)
chr4 (118-267)||(11325031-11325182)
chr4 (182-261)||(11905221-11905299)
chr4 (218-261)||(10198239-10198282)
chr4 (218-260)||(10722112-10722154)
chr4 (218-260)||(10935881-10935923)
chr4 (221-266)||(2679968-2680013)
chr4 (218-260)||(8163914-8163956)
chr4 (218-260)||(10724388-10724430)
chr4 (218-260)||(10938157-10938199)
chr4 (218-260)||(19659568-19659610)
chr4 (218-260)||(21478237-21478279)
chr4 (218-260)||(25116955-25116997)
chr4 (218-260)||(33898976-33899018)
chr4 (218-267)||(9069067-9069116)
[»] chr2 (15 HSPs)
chr2 (113-267)||(29566133-29566288)
chr2 (112-267)||(18765798-18765954)
chr2 (137-267)||(13314872-13315003)
chr2 (147-260)||(21250116-21250228)
chr2 (218-267)||(27107632-27107681)
chr2 (218-267)||(27111201-27111250)
chr2 (220-267)||(20649547-20649594)
chr2 (218-257)||(26860284-26860323)
chr2 (218-260)||(12910619-12910661)
chr2 (218-260)||(22611022-22611064)
chr2 (218-260)||(23758755-23758797)
chr2 (218-260)||(36398782-36398824)
chr2 (218-267)||(12952594-12952643)
chr2 (218-267)||(19198267-19198316)
chr2 (218-267)||(20475264-20475313)
[»] scaffold0022 (1 HSPs)
scaffold0022 (118-267)||(3242-3392)
[»] scaffold0143 (1 HSPs)
scaffold0143 (113-265)||(36421-36573)
[»] scaffold0032 (1 HSPs)
scaffold0032 (137-267)||(103227-103358)
[»] scaffold0064 (2 HSPs)
scaffold0064 (143-267)||(45778-45903)
scaffold0064 (188-257)||(52886-52954)
[»] scaffold0338 (1 HSPs)
scaffold0338 (218-260)||(16201-16243)
[»] scaffold0505 (1 HSPs)
scaffold0505 (218-261)||(10024-10067)
[»] scaffold0226 (1 HSPs)
scaffold0226 (218-260)||(7528-7570)
[»] scaffold0103 (1 HSPs)
scaffold0103 (218-260)||(25661-25703)
[»] scaffold0102 (1 HSPs)
scaffold0102 (218-260)||(37135-37177)
[»] scaffold0059 (2 HSPs)
scaffold0059 (218-260)||(61461-61503)
scaffold0059 (218-259)||(48332-48373)
[»] scaffold0037 (1 HSPs)
scaffold0037 (218-260)||(110244-110286)
[»] scaffold0015 (1 HSPs)
scaffold0015 (170-260)||(202523-202612)
[»] scaffold0520 (1 HSPs)
scaffold0520 (218-259)||(5548-5589)
[»] scaffold0423 (1 HSPs)
scaffold0423 (218-267)||(13729-13778)
[»] scaffold0035 (1 HSPs)
scaffold0035 (220-257)||(37499-37536)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 8727121 - 8726966
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  8727121 gcacctaagctgtgaagtacagtgtttagttgttttgtttgaaggtaacttcatttcattgtgtttgtaacttgagaatcacacgggttgtgatcagttg 8727022  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  8727021 taagggagtgagatgagatctcagatctaggagttcataggttgaagtcattacgg 8726966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 39081242 - 39081087
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||    
T  39081242 gcacctaagctgtgaagtacggtgtttagttgttttgtttgaaggtaacttcatttcattgtatttgtaatttgagaatcataggggctgtgatcagttg 39081143  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||| ||||||||| ||||||| |||||| ||||| |||||||||||||||||||    
T  39081142 taaggtagtgagatgggatctcagatctagtagttcctaggttgaagtcagtacgg 39081087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 17880620 - 17880776
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgttt-gaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| ||||| ||||||||||| ||||||| |||||||| |||||||| ||||||| ||||| |||| ||||||||||||||| ||| |||||||||||    
T  17880620 gcaccaaagctgtgaagtacggtgtttagttattttgttttgaaggtaaattcatttgattgtatttgtaatttgagaatcacaggggttgtgatcagtt 17880719  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  17880720 gtaagggagtgagatgagatctcagatctaggagttcctaggttgaagtcagtacgg 17880776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 17280166 - 17280013
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcat-ttcattgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||  ||||||| |||| | |||||||||||||||    
T  17280166 gcacctaagctgtgaagtacggtgtttagttgttttgtttgaaggtaacttcatattgattgtatttgttatttgagtatcaaaggggctgtgatcagtt 17280067  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagta 264  Q
    |||||||| ||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  17280066 gtaagggactgagatgggatctcagatctagaagttcctaggttgaagtcagta 17280013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 37155406 - 37155562
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||||||| | |||||||  || ||||||||||||||||||||||||||| ||||  ||||| ||||| ||||||| |||||| | | |||||||||||    
T  37155406 gcacctaagttgtgaagtattgtgtttagttgttttgtttgaaggtaactttattttgattgtatttgctatttgagtatcacaggcgttgtgatcagtt 37155505  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||||    
T  37155506 gtaagggagtgagatgggatctcagatcttggagttcctaggttgaagtcagtacgg 37155562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 8734426 - 8734332
Alignment:
Q  13 gcagagatatatgatggtaatgtcacatcaaatacatcatcttaatgctattttgtttctaatcaatttatggctatttgagcaaattttgtggt 107  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8734426 gcagagatatatcatgttaatatcacatcaaatacatcatcttaatgctattttgtttctaatcaatttatggatatttgagcaaattttgtggt 8734332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 113 - 265
Target Start/End: Original strand, 33466043 - 33466195
Alignment:
Q  113 cacctaagctctgaagtacggtatttagttgttttgtt-tgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    |||| ||||| ||||| |||||  |||||||||||||| ||||||||||||||||| ||||||| |  ||| ||||||||||| |||||||||| | |||    
T  33466043 caccaaagctgtgaagcacggtgattagttgttttgttctgaaggtaacttcatttgattgtgtctataatctgagaatcacaggggctgtgattatttg 33466142  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtac 265  Q
    ||||||||||||||| | ||||| |||||||||||| |||||||||||||||||    
T  33466143 taagggagtgagatg-ggtctcagatctaggagttcctaggttgaagtcagtac 33466195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 45136286 - 45136244
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  45136286 agtgagatgggatctcatatctaggagttcctaggttgaagtc 45136244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 12240413 - 12240365
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacg 266  Q
    |||||||||||||||||  ||||||||||| |||| |||||||||||||    
T  12240413 agtgagatgagatctcaggtctaggagttcctaggctgaagtcagtacg 12240365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 23864426 - 23864498
Alignment:
Q  189 atcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    |||||| ||||||||||   ||||| |  ||||||||| ||||||| |||||||||||| |||||||||||||    
T  23864426 atcacatgggctgtgattgattgtaggaaagtgagatgggatctcagatctaggagttcctaggttgaagtca 23864498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 1684150 - 1684103
Alignment:
Q  214 agggagtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||||||| ||||||| | |||||||||| |||||||||||||    
T  1684150 agggagtgagatgggatctcagaactaggagttcttaggttgaagtca 1684103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 13660359 - 13660402
Alignment:
Q  217 gagtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||    
T  13660359 gagtgagatgggatctcagatctaggagttcctaggttgaagtc 13660402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 13719002 - 13719045
Alignment:
Q  217 gagtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||    
T  13719002 gagtgagatgggatctcagatctaggagttcctaggttgaagtc 13719045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 23249906 - 23249863
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  23249906 agtgagatgggatctcagatctaggagttcctaggttgaagtca 23249863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 11221260 - 11221302
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  11221260 agtgagatgggatctcagatctaggagttcctaggttgaagtc 11221302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 22476402 - 22476360
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  22476402 agtgagatgggatctcaaatctaggagttcctaggttgaagtc 22476360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 22485305 - 22485263
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  22485305 agtgagatgggatctcagatctaggagttcttaggttgaagtc 22485263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 1562355 - 1562404
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| || ||||||||  |||||||||||||||||||    
T  1562355 agtgagatgggatctcagatgtaggagtttttaggttgaagtcagtacgg 1562404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 24092128 - 24092079
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||| |||||    
T  24092128 agtgagatgggatctcagatctaggagttcctaggttgaaatcaatacgg 24092079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 8749316 - 8749161
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  8749316 gcacctaagctgtgaattacggtgtttagttgttttgtttgaaggtaacttcatttcattgtgtttgtaatttgagaatcacaggggttgtgatcagttg 8749217  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  8749216 taagggagtgagatgagatctcagatctaggagttcctaggttgaagttagtacgg 8749161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 9036984 - 9036829
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||| ||| |||||||| |||    
T  9036984 gcacctaagctgtgaagtacggtgtttagttgttttgtttgatggtaacttcatttcattgaatttgtaatttgagaatcacaggggttgtgatcaattg 9036885  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||||    
T  9036884 taagggagtgagatgggatctcagatctaggagttcctaggttgaagtcaatacgg 9036829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 9031321 - 9031418
Alignment:
Q  170 ttgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  9031321 ttgtgtttgtaatttgagaatcacaggggatgtgatcaattgtaagggagtgagatgggatctcagatctaggagttcctaggttgaagtcagtacgg 9031418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 13918041 - 13917969
Alignment:
Q  189 atcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcag 262  Q
    |||||| ||||||||||  ||| || ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  13918041 atcacaggggctgtgattggtttta-gggagtgagatgaaatctcatatctaggagttcctaggttgaagtcag 13917969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 215333 - 215382
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  215333 agtgagatgagatctcatatctagaagttcctaggttgaagtcaatacgg 215382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 259
Target Start/End: Complemental strand, 13914038 - 13913920
Alignment:
Q  145 tttgtttgaaggtaacttcatttcatt-----gtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatct 239  Q
    ||||||||||||||||||||| | |||     ||||||| ||  |||  |||||| ||||||||||  ||| || ||||||||||||| |||||| ||||    
T  13914038 tttgtttgaaggtaacttcatctgatttgtttgtgtttgtaacctgatgatcacaggggctgtgattggttcta-gggagtgagatgaaatctcagatct 13913940  T
Q  240 aggagttcataggttgaagt 259  Q
    |||||||| |||||||||||    
T  13913939 aggagttcctaggttgaagt 13913920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 14406616 - 14406665
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| |||||||| ||||||||||    
T  14406616 agtgagatgggatctcagatctaggagttcttaggttgaggtcagtacgg 14406665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 18064193 - 18064242
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||| |||||    
T  18064193 agtgagatgagatctcagatctaggagttcctaggttgaaatcaatacgg 18064242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 11558308 - 11558356
Alignment:
Q  215 gggagtgagatgagatctcatatctaggagttcataggttgaagtcagt 263  Q
    |||||||||||| ||||||| |||||||||||| ||||||||| |||||    
T  11558308 gggagtgagatgggatctcaaatctaggagttcctaggttgaaatcagt 11558356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 11567577 - 11567625
Alignment:
Q  215 gggagtgagatgagatctcatatctaggagttcataggttgaagtcagt 263  Q
    |||||||||||| ||||||| |||||||||||| ||||||||| |||||    
T  11567577 gggagtgagatgggatctcaaatctaggagttcctaggttgaaatcagt 11567625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 28051307 - 28051268
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaa 257  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  28051307 agtgagatgagatctcagatctaggagttcctaggttgaa 28051268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 13790851 - 13790809
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  13790851 agtgagatgggatctcagatctaggagttcctaggttgaagtc 13790809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 21094619 - 21094730
Alignment:
Q  147 tgtttgaaggtaacttcatttcattgtgt-ttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagt 245  Q
    |||||||||||||||||  |||||| ||| ||  ||| ||| ||||| | |||||||||| | ||||| |  ||||||| | ||||||| ||||||||||    
T  21094619 tgtttgaaggtaacttc--ttcattttgtgtttaaatatgataatcataggggctgtgattaattgtaggatagtgagacgggatctcagatctaggagt 21094716  T
Q  246 tcataggttgaagt 259  Q
    || |||||||||||    
T  21094717 tcctaggttgaagt 21094730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 21718913 - 21718955
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| |||||||||||| |||||| |||||    
T  21718913 agtgagatgagatctcagatctaggagttcctaggttaaagtc 21718955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 24195695 - 24195653
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  24195695 agtgagatgggatctcagatctaggagttcctaggttgaagtc 24195653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 6580854 - 6580903
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||| |||||    
T  6580854 agtgagatgggatctcagatctaggagttcctaggttgaaatcaatacgg 6580903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 23954544 - 23954585
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagt 259  Q
    ||||||||| ||||||| |||||||||||| |||||||||||    
T  23954544 agtgagatgggatctcaaatctaggagttcctaggttgaagt 23954585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 44452650 - 44452610
Alignment:
Q  220 tgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||| ||||||| |||||||||||| ||||||||||||    
T  44452650 tgagatgggatctcagatctaggagttcctaggttgaagtc 44452610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 45599211 - 45599366
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  45599211 gcacctaagctgtgaagtatggtgtttagttgttttgtttgaaagtaacttcatttcattgtgtttgtaatttgagaatcacaagggttgtgatcagttg 45599310  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  45599311 taagggagtgagatgagatctcagatctaggagttcctaggttgaagtcagtacgg 45599366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 40313105 - 40313261
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||| ||||| |||||||| || ||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||| ||||||||||||    
T  40313105 gcaccaaagctgtgaagtacagtttttagttattttgtttgaaggtaactttatttcattgtgtttgtagtttgagaatcacaggggttgtgatcagttg 40313204  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacggc 268  Q
    ||||||||||||||||||||||| || || |||||| ||||||||||||||||||||    
T  40313205 taagggagtgagatgagatctcagatatatgagttcctaggttgaagtcagtacggc 40313261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 265
Target Start/End: Complemental strand, 17012275 - 17012127
Alignment:
Q  118 aagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatt-tcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagg 216  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||| ||| |||||||||||||||||    
T  17012275 aagctgtgaagtacggtgtttagttgttttgtttgaaggtaacttcattctgattgtatttgtaatttgagaatcacaggggttgtgatcagttgtaagg 17012176  T
Q  217 gagtgagatgagatctcatatctaggagttcataggttgaagtcagtac 265  Q
    || ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  17012175 gaatgagatgagatctcagatccaggagttcctaggttgaagtcagtac 17012127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 52436700 - 52436856
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgttt-gaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| ||||| ||||| ||||| |||||||||||||||| ||||| |||||||||| |||||||||| |  |||||||||||| |||||||||||| ||    
T  52436700 gcaccaaagctatgaagcacggtgtttagttgttttgttttgaaggcaacttcatttgattgtgtttgtatattgagaatcacaggggctgtgatcattt 52436799  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||    
T  52436800 gtaagggagtgggatgagatctcagatctaggagttcctaggttgaagtcagtacgg 52436856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 33062662 - 33062511
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgtttt-gtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||||||       
T  33062662 gcaccaaagctatgaagtacggtgtttagttgtttttgtttgaaggtaacttcatttgattgtatttgtattttgagaatcacaggggttgtgatca--a 33062565  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagta 264  Q
    ||| |||| ||||||| | ||||| |||||||||||| ||||||||||||||||    
T  33062564 gtacgggaatgagatggggtctcagatctaggagttcctaggttgaagtcagta 33062511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 10340075 - 10340184
Alignment:
Q  147 tgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagtt 246  Q
    ||||||||||||||||||     ||||||||  ||||||| ||||||| ||||||||||   ||||| |  ||||||||||||||||| |||||||||||    
T  10340075 tgtttgaaggtaacttcaccattttgtgttta-aatttgataatcacaggggctgtgattgattgtaggatagtgagatgagatctcagatctaggagtt 10340173  T
Q  247 cataggttgaa 257  Q
    | |||||||||    
T  10340174 cctaggttgaa 10340184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 17038494 - 17038374
Alignment:
Q  145 tttgtttgaaggtaacttcatttcatt-----gtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatct 239  Q
    ||||||||||||||||||||| | |||     ||||||| ||  ||| ||||||  ||||||||||  |||||| ||||| |||||| ||||||| ||||    
T  17038494 tttgtttgaaggtaacttcatatgatttgtttgtgtttgtaacctgataatcactggggctgtgattggttgta-gggagagagatgggatctcagatct 17038396  T
Q  240 aggagttcataggttgaagtca 261  Q
    |||||||| |||||||||||||    
T  17038395 aggagttcctaggttgaagtca 17038374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 20841252 - 20841299
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtac 265  Q
    ||||||||| ||||||| |||||||||||| |||||||||||| ||||    
T  20841252 agtgagatgggatctcagatctaggagttcctaggttgaagtctgtac 20841299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 1973484 - 1973435
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||| |||||    
T  1973484 agtgagatgggatctcagatctaggagttcctaggttgaaatcaatacgg 1973435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 3290564 - 3290720
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||| |||||| |||||||||||||||    
T  3290564 gcacctaagctgtgaagtacggtatttagttgttttgtttgaaggtaacttcattttgattgtatttgctatttgagtatcacaggggctgtgatcagtt 3290663  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  3290664 gtaagggagtgaaatgagatctcagatctaggagttcctaggttgaagtcagtacgg 3290720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 14975711 - 14975554
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgt--ttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagt 209  Q
    ||||| ||||| ||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||  |||| ||||||| |    
T  14975711 gcaccaaagctgtgaagtacggtgtttagttgttttgtgtttgaaggtaacttcattttattgtgtttgtaatttgagaatcactggggcagtgatcatt 14975612  T
Q  210 tgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  14975611 tgtaagggagtgagatgggatctcagatctaggagttcctaggttgaagtcagtacgg 14975554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 15405187 - 15405030
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgt--ttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagt 209  Q
    ||||| ||||| ||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||  |||| ||||||| |    
T  15405187 gcaccaaagctgtgaagtacggtgtttagttgttttgtgtttgaaggtaacttcattttattgtgtttgtaatttgagaatcactggggcagtgatcatt 15405088  T
Q  210 tgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  15405087 tgtaagggagtgagatgggatctcagatctaggagttcctaggttgaagtcagtacgg 15405030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 118 - 267
Target Start/End: Original strand, 48797506 - 48797655
Alignment:
Q  118 aagctctgaagtacggtatttagttgttttgtttgaaggtaacttca-tttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagg 216  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||| ||| |||||||||||||||||    
T  48797506 aagctgtgaagtacggtgtttagttgttttgtttgaaggtaacttcattttgattgtatttgtaatttgagaatcacaggggttgtgatcagttgtaagg 48797605  T
Q  217 gagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||||||||    
T  48797606 gagtga-atgagatctcagatctaggagttcctaggttgaagtcagtacgg 48797655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 7620347 - 7620202
Alignment:
Q  124 tgaagtacggtatttagttgttttgt--ttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtg 221  Q
    ||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||| ||||| ||||||| | ||| ||||||||||||||||||||||    
T  7620347 tgaagtacggtgtttagttgttttgtgtttgaaggtaacttcattttattgtgtttgtaatttaagaatcataggggttgtgatcagttgtaagggagtg 7620248  T
Q  222 agatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||| ||||||| |||||||||||| ||||||||||| |||||||    
T  7620247 agatgggatctcagatctaggagttcctaggttgaagttagtacgg 7620202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 14984938 - 14984793
Alignment:
Q  124 tgaagtacggtatttagttgttttgt--ttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtg 221  Q
    ||||||||| | ||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||| |||    
T  14984938 tgaagtacgatgtttagttgttttgtgtttgaaggtaacttcattttattgtgtttgtaatttgagaatcacaggggttgtgatcagttgtaagggcgtg 14984839  T
Q  222 agatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||| ||||||| |||||||| ||| |||||||||||||||||||    
T  14984838 agatgggatctcagatctaggaattcctaggttgaagtcagtacgg 14984793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 15414549 - 15414404
Alignment:
Q  124 tgaagtacggtatttagttgttttgt--ttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtg 221  Q
    ||||||||| | ||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||| |||    
T  15414549 tgaagtacgatgtttagttgttttgtgtttgaaggtaacttcattttattgtgtttgtaatttgagaatcacaggggttgtgatcagttgtaagggcgtg 15414450  T
Q  222 agatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||| ||||||| |||||||| ||| |||||||||||||||||||    
T  15414449 agatgggatctcagatctaggaattcctaggttgaagtcagtacgg 15414404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 11628915 - 11628762
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||| ||||| |||||||||||  ||||||  ||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||||||||||    
T  11628915 gcaccaaagctgtgaagtacggtgattagtt--tttgtttgaaggtaacttcatttgattgtttttgtattttgagaatcacaggggttgtgatcagttg 11628818  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||| || |||||   |||||||||||| |||| ||||||||||||||    
T  11628817 taagggagtgaggtgggatcttcgatctaggagttcctaggctgaagtcagtacgg 11628762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 42782957 - 42782878
Alignment:
Q  188 aatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  42782957 aatcacaggggctgtgattggttgtaagggagtgagatgagatctcagatctaggagttcctaggttgaagtcagtacgg 42782878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 24049691 - 24049572
Alignment:
Q  149 tttgaaggtaacttca--tttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagtt 246  Q
    ||||||||||||||||  ||| ||||||| || ||  ||||||||||| |||||||||| | ||||| |||||||||||| ||||||| |||||||||||    
T  24049691 tttgaaggtaacttcaactttgattgtgtctgtaaactgagaatcacaggggctgtgattatttgta-gggagtgagatgtgatctcagatctaggagtt 24049593  T
Q  247 cataggttgaagtcagtacgg 267  Q
    | ||||||||||||| |||||    
T  24049592 cctaggttgaagtcaatacgg 24049572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 11560457 - 11560542
Alignment:
Q  182 tttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||  ||||||||| | ||| |||||||||||||||||| ||| ||| |||||||| ||||||||||||| |||||    
T  11560457 tttgagaatcacagaggctgtgattatttgcaagggagtgagatgagatatcagatccaggagttcctaggttgaagtcaatacgg 11560542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 9564503 - 9564383
Alignment:
Q  145 tttgtttgaaggtaacttcatttcatt-----gtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatct 239  Q
    ||||||||||||||||||||| | |||     ||||||| ||  ||| ||||||  ||| ||||||  |||||| |||||||||||| ||||||| ||||    
T  9564503 tttgtttgaaggtaacttcatctgatttgtttgtgtttgtaacctgataatcaccggggatgtgattggttgta-gggagtgagatgggatctcagatct 9564405  T
Q  240 aggagttcataggttgaagtca 261  Q
    |||||||| |||||||||||||    
T  9564404 aggagttcctaggttgaagtca 9564383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 10038677 - 10038757
Alignment:
Q  180 aatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||| ||||||| ||||||||||   ||||| |  ||||||||| ||||||| |||||||||||| ||||||||||||    
T  10038677 aatttgataatcacaggggctgtgattgattgtaggatagtgagatgggatctcagatctaggagttcttaggttgaagtc 10038757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 30226256 - 30226208
Alignment:
Q  219 gtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  30226256 gtgagatgggatctcagatctaggagttcctaggttgaagtcagtacgg 30226208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 31269044 - 31269090
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagta 264  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  31269044 agtgagatgagatctcagatctaggagttcctaggttgaaatcagta 31269090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 4794527 - 4794603
Alignment:
Q  170 ttgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttc 247  Q
    ||||||||| ||  ||| ||||||| ||||||||||  |||||| |||||||||||| ||||||| ||||||||||||    
T  4794527 ttgtgtttgtaacctgataatcacaggggctgtgattggttgta-gggagtgagatgcgatctcagatctaggagttc 4794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 9894054 - 9894103
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||| |||||    
T  9894054 agtgagatgggatctcagatctaggagttcctaggttgaagtcaatacgg 9894103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 20588695 - 20588736
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagt 259  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  20588695 agtgagatgagatctcagatctaggagttcttaggttgaagt 20588736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 23057377 - 23057328
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| |||||||||||| | || ||||||||||||||    
T  23057377 agtgagatgagatctcaaatctaggagttcctcggctgaagtcagtacgg 23057328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 26132903 - 26132952
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||| |||||    
T  26132903 agtgagatgagatctcagatctaggagttcctaggttgaaatcaatacgg 26132952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 7508605 - 7508562
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  7508605 agtgagatgggatctcagatctaggagttcctaggttgaagtca 7508562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 9567122 - 9567036
Alignment:
Q  170 ttgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaa 257  Q
    ||||||||| ||  ||| ||||||| ||| ||||||  |||||| |||||||||||| ||||||| ||||| |||||| |||||||||    
T  9567122 ttgtgtttgtaacctgataatcacaggggttgtgattggttgta-gggagtgagatgggatctcagatctatgagttcctaggttgaa 9567036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 23296674 - 23296631
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  23296674 agtgagatgggatctcagatctaggagttcctaggttgaagtca 23296631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 23957045 - 23957006
Alignment:
Q  221 gagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  23957045 gagatgagatctcagatctaggagttcctaggttgaagtc 23957006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 42636418 - 42636379
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaa 257  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  42636418 agtgagatgagatctcagatctaggagttcctaggttgaa 42636379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 4458911 - 4458869
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  4458911 agtgagatgggatctcagatctaggagttcctaggttgaagtc 4458869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 13455099 - 13455141
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  13455099 agtgagatgggatctcagatctaggagttcctaggttgaagtc 13455141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 14165337 - 14165295
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  14165337 agtgagatgtgatctcagatctaggagttcctaggttgaagtc 14165295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 14687538 - 14687492
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagta 264  Q
    |||||||||  |||||| |||||||||||| ||||||||||||||||    
T  14687538 agtgagatggaatctcagatctaggagttcctaggttgaagtcagta 14687492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 24902276 - 24902234
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  24902276 agtgagatgggatctcagatctaggagttcctaggttgaagtc 24902234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 15708342 - 15708293
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| |||||| |||||| |||||    
T  15708342 agtgagatgggatctcagatctaggagttcctaggttcaagtcaatacgg 15708293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 10661034 - 10660986
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacg 266  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||| ||||    
T  10661034 agtgagatgggatctcagatctaggagttcctaggttgaaatcaatacg 10660986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 11406938 - 11406986
Alignment:
Q  219 gtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||  |||||| |||||||||||| ||||||||||||| |||||    
T  11406938 gtgagatggaatctcagatctaggagttcctaggttgaagtcaatacgg 11406986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 11999049 - 11999009
Alignment:
Q  220 tgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||| ||||||| |||||||||||| ||||||||||||    
T  11999049 tgagatgggatctcagatctaggagttcctaggttgaagtc 11999009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 19216231 - 19216075
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||  ||||| ||| | ||||||| |||||| |||||||||||||||    
T  19216231 gcacctaagctgtgaagtatggtgtttagttgttttgtttgaaggtaacttcattttgattgtattttctatttgagtatcacaagggctgtgatcagtt 19216132  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||| ||||||| |||||||||||| || |||||||| |||||||    
T  19216131 gtaagggagtgagatgggatctcaaatctaggagttcctaagttgaagttagtacgg 19216075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 16137462 - 16137619
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgt--ttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagt 209  Q
    ||||||||||| | ||||||||| ||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||| | ||| |||||| |||    
T  16137462 gcacctaagctgtaaagtacggtgtttagttgttttgtgtttgaaggtaacttcattttattgtgtttgtaatttgagaatcataggggttgtgataagt 16137561  T
Q  210 tgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| ||||||| || || |||||| |||||||||||||||||||    
T  16137562 tgtaagggagtgagatgtgatctcagatttatgagttcctaggttgaagtcagtacgg 16137619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 267
Target Start/End: Original strand, 12444604 - 12444759
Alignment:
Q  113 cacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    |||| ||||| ||||||||||| || |||||| |||||||||||||| |||||||  ||||| ||||  ||||||| |||||| ||| ||||||||||||    
T  12444604 caccaaagctgtgaagtacggtgttcagttgtgttgtttgaaggtaaattcattttgattgtatttgttatttgagtatcacaggggttgtgatcagttg 12444703  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||| || ||||||| |||||||||||| |||||||||||||||||||    
T  12444704 taagggagtgaggtgggatctcaaatctaggagttcctaggttgaagtcagtacgg 12444759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 15038624 - 15038469
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||  ||||| |||| | |||||| |||| | ||||| |||||||||    
T  15038624 gcaccaaagctgtgaagtacggtattcagttgtattgtttgaaggtaacttcattttgattgtatttgta-tttgagtatcataggggctatgatcagtt 15038526  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||| ||||||||||| ||||||| |||||||||||  |||||||||||||||||||    
T  15038525 gtaatggagtgagatgggatctcagatctaggagttactaggttgaagtcagtacgg 15038469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 267
Target Start/End: Original strand, 15003055 - 15003199
Alignment:
Q  124 tgaagtacggtatttagttgttt-tgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtga 222  Q
    ||||| |||||  |||||||||| |||||||||||||||| |||| ||||||| || || || ||||||| |  ||| ||||||| ||||||||||||||    
T  15003055 tgaagcacggtgattagttgtttgtgtttgaaggtaactttatttgattgtgtctgtaaattcagaatcatagaggcagtgatcatttgtaagggagtga 15003154  T
Q  223 gatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||| |||||||||||| || ||||||||||||||||    
T  15003155 gatgagatctcaaatctaggagttcctatgttgaagtcagtacgg 15003199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 9384879 - 9384736
Alignment:
Q  124 tgaagtacggtatttagttgttttgtttg-aaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtga 222  Q
    ||||| ||||| |||||||||||| |||  ||||||||||||||| |||||||||| |  |||||||||||| ||| |||||||| |||| |||||||||    
T  9384879 tgaagcacggtgtttagttgttttttttttaaggtaacttcatttgattgtgtttgtatattgagaatcacaggggttgtgatcatttgttagggagtga 9384780  T
Q  223 gatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||| ||||||| ||| | |||||| |||||||||||||||||||    
T  9384779 gatgggatctcagatc-aagagttcctaggttgaagtcagtacgg 9384736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 20003346 - 20003259
Alignment:
Q  180 aatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||  || ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||    
T  20003346 aatttgagaatcacagaggatgtgatcagttgtaagggagtgagatgggatctcaaatctaggagttcctaggttgaagtaagtacgg 20003259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 32452252 - 32452131
Alignment:
Q  124 tgaagtacggtatttagttgttttgtttgaa-ggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtga 222  Q
    |||||||||||   |||||||||||||| || ||||||||||||| ||||||| || ||| ||||||||| | ||  |||||||| ||||||||||||||    
T  32452252 tgaagtacggtgaatagttgttttgttttaaaggtaacttcatttgattgtgtctgtaatctgagaatcataggg--tgtgatcatttgtaagggagtga 32452155  T
Q  223 gatgagatctcatatctaggagtt 246  Q
    |||| ||||||| |||||||||||    
T  32452154 gatgggatctcagatctaggagtt 32452131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 21323181 - 21323311
Alignment:
Q  138 tagttgttttgtttgaaggtaacttcat--ttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcat 235  Q
    ||||||||||||||||||||||||||||  ||  ||||||||| ||| ||| ||||||| ||| |||| |   ||| | || |||||||||||||||||     
T  21323181 tagttgttttgtttgaaggtaacttcatcttttgttgtgtttgtaatctgataatcacatgggttgtggttcattg-agggaagtgagatgagatctcag 21323279  T
Q  236 atctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||| ||||||||||||| |||||    
T  21323280 atctaggagttcctaggttgaagtcaatacgg 21323311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 20558473 - 20558431
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  20558473 agtgagatgagatctcatatctaggagttcttaggttgaagtc 20558431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 18152694 - 18152739
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagt 263  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  18152694 agtgagatgagatctcagatctaggagttcctaggttgaagtcagt 18152739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 16309342 - 16309389
Alignment:
Q  214 agggagtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  16309342 agggagtgagatgagatctcagatctacgagttcctaggttgaagtca 16309389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 17855366 - 17855324
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  17855366 agtgagatgagatctcagatctaggagttcctaggttgaagtc 17855324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 20470191 - 20470233
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  20470191 agtgagatgagatctcagatctaggagttcctaggttgaagtc 20470233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 23882652 - 23882721
Alignment:
Q  188 aatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaa 257  Q
    ||||||| ||||||||||    ||||||  ||||||||||||| ||| ||||||||||||||||||||||    
T  23882652 aatcacaggggctgtgattgactgtaagatagtgagatgagatatcagatctaggagttcataggttgaa 23882721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 26965488 - 26965600
Alignment:
Q  147 tgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagtt 246  Q
    ||||||||||| |||||||    ||||||||  ||||||| ||||||| ||| ||||||   ||||| |  ||||||||| ||||||| |||||||||||    
T  26965488 tgtttgaaggtcacttcatcattttgtgttta-aatttgataatcacaggggttgtgattgattgtaggatagtgagatgggatctcagatctaggagtt 26965586  T
Q  247 cataggttgaagtc 260  Q
    | ||||||||||||    
T  26965587 cctaggttgaagtc 26965600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 28623699 - 28623650
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||| |||||    
T  28623699 agtgagatgagatctcaaatctaggagttcctaggttgaaatcaatacgg 28623650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 15004177 - 15004272
Alignment:
Q  113 cacctaagctctgaagtacggtatttagttgttt-tgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatca 207  Q
    |||| ||||| ||||| |||||  |||||||||| ||||||||||||| ||||||| ||||||| || || || ||||||| |  |||||||||||    
T  15004177 caccaaagctgtgaagcacggtgattagttgtttgtgtttgaaggtaaattcatttgattgtgtctgtaaattcagaatcatagaggctgtgatca 15004272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 20764982 - 20765025
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||    
T  20764982 agtgagatgagatctcagatctaagagttcttaggttgaagtca 20765025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 9281696 - 9281738
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  9281696 agtgagatgggatctcaaatctaggagttcctaggttgaagtc 9281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 13195495 - 13195453
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  13195495 agtgagatgggatctcagatctaggagttcctaggttgaagtc 13195453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 17864413 - 17864455
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  17864413 agtgagatgggatctcagatctaggagttcctaggttgaagtc 17864455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 19171587 - 19171545
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    |||||||||  |||||| |||||||||||||||||||||||||    
T  19171587 agtgagatggaatctcagatctaggagttcataggttgaagtc 19171545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 33665965 - 33665923
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| |||||||||||| | ||||||||||    
T  33665965 agtgagatgagatctcagatctaggagttccttggttgaagtc 33665923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 25805624 - 25805575
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||| |||||    
T  25805624 agtgagatgggatctcagatctaggagttcctaggttgaaatcaatacgg 25805575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 29254904 - 29254953
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| ||||||||||||||| |||||| ||| |||||    
T  29254904 agtgagatgggatctcagatctaggagttcataagttgaaatcaatacgg 29254953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 7897796 - 7897952
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| ||||| ||||||||||| || |||||| ||||||||||||||||||||||  ||||| |||| |||||||| |||||| |||||||||||||||    
T  7897796 gcaccaaagctgtgaagtacggtgttcagttgtgttgtttgaaggtaacttcattttgattgtatttgtaatttgagtatcacaggggctgtgatcagtt 7897895  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  7897896 gtaagggagtgagatgggatctcagatctaagagttcctaggttgaagtcagtacgg 7897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 20498033 - 20498190
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgtttt-gtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagt 209  Q
    ||||| |||||  |||||||||| |  ||||||||| ||||||||||||||||||||  ||||| ||||  ||||||| |||||| ||||||||||||||    
T  20498033 gcaccaaagctgcgaagtacggtgtccagttgtttttgtttgaaggtaacttcattttgattgtatttgttatttgagtatcacaagggctgtgatcagt 20498132  T
Q  210 tgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  20498133 tgtaagggagtgagatgagatctcagatctaggagttcctaggttgaagtcagtacgg 20498190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 17920666 - 17920821
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| ||||| ||||||||||| || |||||| ||||||||||||||||||||||  ||||| |||| | || ||| |||||| |||||||||||||||    
T  17920666 gcaccaaagctgtgaagtacggtgttcagttgtgttgtttgaaggtaacttcattttgattgtatttgtactt-gagtatcacaggggctgtgatcagtt 17920764  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||||||    
T  17920765 gtaaaggagtaagatgggatctcagatctaggagttcctaggttgaagtcagtacgg 17920821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 26183144 - 26183271
Alignment:
Q  141 ttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatct 239  Q
    ||||||||||| |||||||||||||||  |||||  |||  ||||||| |||||| ||||||||||||||| ||| ||||||||||| ||||||| ||||    
T  26183144 ttgttttgtttaaaggtaacttcattttgattgtaattgttatttgagtatcacaggggctgtgatcagttttaaaggagtgagatgggatctcagatct 26183243  T
Q  240 aggagttcataggttgaagtcagtacgg 267  Q
    |||||||| |||||||||||||||||||    
T  26183244 aggagttcctaggttgaagtcagtacgg 26183271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 20740849 - 20740968
Alignment:
Q  143 gttttgtttgaaggtaacttcat--ttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatcta 240  Q
    ||||||||||||||| |||||||  ||  |||||||   || |||| ||||||| | ||||||||  |||||| |||||||||||||||||||| |||||    
T  20740849 gttttgtttgaaggttacttcatcttttgttgtgttgataacttgataatcacaagagctgtgattggttgta-gggagtgagatgagatctcagatcta 20740947  T
Q  241 ggagttcataggttgaagtca 261  Q
    ||||||| |||||||||||||    
T  20740948 ggagttcctaggttgaagtca 20740968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 22130790 - 22130879
Alignment:
Q  170 ttgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||  ||| ||||||| ||||||||||  |||||| |||||||||||| ||||||| |||||||||||  ||||||||||||    
T  22130790 ttgtgtttgtaacctgataatcacaggggctgtgattggttgta-gggagtgagatgggatctcagatctaggagtttctaggttgaagtc 22130879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 13941912 - 13942026
Alignment:
Q  143 gttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctagg 242  Q
    |||||||||||||||||||||||    ||||||||  ||| ||||||||||| ||| ||||||   ||||| |  | ||||||| ||||||| |||||||    
T  13941912 gttttgtttgaaggtaacttcatcattttgtgttt--aatctgagaatcacaggggttgtgattgattgtaggataatgagatgggatctcagatctagg 13942009  T
Q  243 agttcataggttgaagt 259  Q
    ||||| |||||||||||    
T  13942010 agttcctaggttgaagt 13942026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 9422505 - 9422546
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagt 259  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  9422505 agtgagatgggatctcagatctaggagttcataggttgaagt 9422546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 22979917 - 22979868
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||| |||||    
T  22979917 agtgagatgagatctcagatctaagagttcctaggttgaagtcaatacgg 22979868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 9522705 - 9522662
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  9522705 agtgagatgggatctcagatctaggagttcctaggttgaagtca 9522662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 13734961 - 13735003
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  13734961 agtgagatgggatctcagatctaggagttcctaggttgaagtc 13735003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 20845782 - 20845824
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    |||||||| |||||||| |||||||||||| ||||||||||||    
T  20845782 agtgagataagatctcagatctaggagttcctaggttgaagtc 20845824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 22404749 - 22404791
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  22404749 agtgagatgggatctcagatctaggagttcctaggttgaagtc 22404791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 20714724 - 20714773
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||| |||||| |||||||||||| ||||||||| ||| |||||    
T  20714724 agtgagatgaaatctcagatctaggagttcctaggttgaaatcaatacgg 20714773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 23624048 - 23623999
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| ||||| |||||| ||||||||| ||| |||||    
T  23624048 agtgagatgagatctcaaatctaagagttcctaggttgaaatcaatacgg 23623999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 26329202 - 26329251
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| |||||||||||| ||||||||| ||| |||||    
T  26329202 agtgagatgggatctcagatctaggagttcctaggttgaaatcaatacgg 26329251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 16867 - 17009
Alignment:
Q  126 aagtacggtatttagttgttttgttt-gaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgaga 224  Q
    ||||||||| |||| ||||||||||| |||||||||||||||| ||||| || | ||||||||||||||| |||||||||| ||||||||||||||||||    
T  16867 aagtacggtgtttaattgttttgttttgaaggtaacttcatttgattgtattcgtaatttgagaatcacaggggctgtgattagttgtaagggagtgaga 16966  T
Q  225 tgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    || ||||||| |||||||||||| |||||||||||||||||||    
T  16967 tgggatctcagatctaggagttcctaggttgaagtcagtacgg 17009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 25354517 - 25354673
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| ||||| ||||||||| | || |||||| ||||||||||||||||||||||  ||||| ||||  ||||||| |||||| |||||||||||||||    
T  25354517 gcaccaaagctgtgaagtacgatgttcagttgtattgtttgaaggtaacttcattttgattgtatttgttatttgagtatcacaggggctgtgatcagtt 25354616  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  25354617 gtaagggagtgagatgtgatctcaaatctaggagttcctaggttgaagtcagtacgg 25354673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 19894693 - 19894841
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||           
T  19894693 gcacctaagctgtgaagtacggcgtttagttgttttgtttgaaggtaacttcatttcattgtgtttgtaatttgagaatcacaggggttgtga------- 19894785  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||| ||||||| || ||||||||  |||||||||||||||||||    
T  19894786 taagggagtgagatgggatctcagatttaggagtttctaggttgaagtcagtacgg 19894841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 24143406 - 24143256
Alignment:
Q  118 aagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagg 216  Q
    ||||| ||||||||||| || |||||| ||||||||||||| ||||||||  ||||| ||||  ||||||| || ||| |||||||||||||||||||||    
T  24143406 aagctgtgaagtacggtgttcagttgtgttgtttgaaggtagcttcattttgattgtatttgttatttgagtattacaggggctgtgatcagttgtaagg 24143307  T
Q  217 gagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  24143306 gagtgagatgggatctcagatctaggagttcataggttaaagtcagtacgg 24143256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 46739146 - 46739278
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||     ||||||||||||     
T  46739146 gcacctaagttgtgaagtatggtgtttagttgttttgtttgaaggtaacttcattttattgtatttgtaatttgagaatcac-----ctgtgatcagttt 46739240  T
Q  212 taagggagtgagatgagatctcatatctaggagttcat 249  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  46739241 taagggagtgagatgagatctcagatctaggagttcat 46739278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 113 - 267
Target Start/End: Complemental strand, 23541520 - 23541365
Alignment:
Q  113 cacctaagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||||||| |||  ||||| ||||  ||||||| |||||| ||||| ||||||||||    
T  23541520 cacctaagttgtgaagtacggtgtttagttgttttgtttgaaggtaacttcgttttgattgtatttgttatttgagtatcacaggggctatgatcagttg 23541421  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||||||||| ||||||  ||||   |||||||||||||||||    
T  23541420 taagggagtgagatgagatctcagatctagttgttcccgggttgaagtcagtacgg 23541365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 113 - 267
Target Start/End: Complemental strand, 22555249 - 22555093
Alignment:
Q  113 cacctaagctctgaagtacggtatttagttgtttt-gtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    |||| ||||| ||||||||||| |  ||||||||| |||||||| |||||||||||  ||||| ||||  ||||||| |||||| ||||| |||||||||    
T  22555249 caccaaagctgtgaagtacggtgtccagttgtttttgtttgaagataacttcattttgattgtatttgttatttgagtatcacaggggctatgatcagtt 22555150  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    | |||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  22555149 gcaagggagtgagatgggatctcagatctacgagttcctaggttgaagtcagtacgg 22555093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 267
Target Start/End: Original strand, 11325031 - 11325182
Alignment:
Q  118 aagctctgaagtacggtatttagttgtttt-gtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaag 215  Q
    ||||| ||||||||||| |  ||||||||| ||||||||||||||||||||  ||||| ||||  ||||||| |||||| ||||||||||||||||||||    
T  11325031 aagctgtgaagtacggtgtccagttgtttttgtttgaaggtaacttcattttgattgtatttgttatttgagtatcacaggggctgtgatcagttgtaag 11325130  T
Q  216 ggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||  |||| | ||||| |||||| ||||||||||| |||||||    
T  11325131 ggagtgagatggaatcttagatctacgagttcctaggttgaagttagtacgg 11325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 11905299 - 11905221
Alignment:
Q  182 tttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||||||| |||||||||| | ||||| |||||| ||||| ||||| | |||||||||||| |||||||||||||    
T  11905299 tttgagaatcacatgggctgtgattatttgta-gggagttagatgggatctaagatctaggagttcctaggttgaagtca 11905221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 10198239 - 10198282
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||||||||||| |||||||||||| |||||||||||||    
T  10198239 agtgagatgagatctcagatctaggagttcctaggttgaagtca 10198282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 10722154 - 10722112
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  10722154 agtgagatgagatctcagatctaggagttcctaggttgaagtc 10722112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 10935923 - 10935881
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  10935923 agtgagatgagatctcagatctaggagttcctaggttgaagtc 10935881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 2680013 - 2679968
Alignment:
Q  221 gagatgagatctcatatctaggagttcataggttgaagtcagtacg 266  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||    
T  2680013 gagatgagatctcagatctaggagctcctaggttgaagtcagtacg 2679968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 8163956 - 8163914
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  8163956 agtgagatgggatctcagatctaggagttcctaggttgaagtc 8163914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 10724430 - 10724388
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  10724430 agtgagatgggatctcagatctaggagttcctaggttgaagtc 10724388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 10938199 - 10938157
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  10938199 agtgagatgggatctcagatctaggagttcctaggttgaagtc 10938157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 19659610 - 19659568
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  19659610 agtgagatgggatctcagatctaggagttcctaggttgaagtc 19659568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 21478279 - 21478237
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  21478279 agtgagatgggatctcagatctaggagttcctaggttgaagtc 21478237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 25116997 - 25116955
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  25116997 agtgagatgggatctcagatctaggagttcctaggttgaagtc 25116955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 33898976 - 33899018
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| | |||||||||| ||||||||||||    
T  33898976 agtgagatgagatctcaaacctaggagttcctaggttgaagtc 33899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 9069116 - 9069067
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| |||||||||||| ||| ||||| ||| |||||    
T  9069116 agtgagatgagatctcagatctaggagttcctagattgaaatcaatacgg 9069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 113 - 267
Target Start/End: Complemental strand, 29566288 - 29566133
Alignment:
Q  113 cacctaagctctgaagtacggtatttagttgttttgttt-gaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    |||| ||||| ||||| |||||  ||||||||||||||| |||||||||||||||| ||||||| || || |||| ||||||| |||||||||||| |||    
T  29566288 caccaaagctgtgaagcacggttgttagttgttttgttttgaaggtaacttcatttgattgtgtctgtaaattgaaaatcacaggggctgtgatcatttg 29566189  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||    
T  29566188 taagggagtgagatgggatctcagatctaggagtttctaggttgaagtcagtacgg 29566133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 18765954 - 18765798
Alignment:
Q  112 gcacctaagctctgaagtacggtatttagttgttttgttt-gaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagtt 210  Q
    ||||| |||||  |||||||||| ||||||||||| |||| |||||||||||||||| ||| | |||| ||||||| ||||||| |||||||||| ||||    
T  18765954 gcaccaaagctgagaagtacggtgtttagttgtttagttttgaaggtaacttcatttaattatttttgtaatttgaaaatcacatgggctgtgattagtt 18765855  T
Q  211 gtaagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||| ||| ||||||| ||||||| ||||| |||||| ||||||||||| |||||||    
T  18765854 gtaatggaatgagatgggatctcagatctacgagttcctaggttgaagttagtacgg 18765798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 13314872 - 13315003
Alignment:
Q  137 ttagttgttttgttt-gaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcat 235  Q
    ||||||||||||||| |||||||||||||||| ||||||| || ||  ||||||||||| |||||||||||| ||| |||||||||||||| |||||||     
T  13314872 ttagttgttttgttttgaaggtaacttcatttgattgtgtctgtaaactgagaatcacatgggctgtgatcatttggaagggagtgagatgggatctcag 13314971  T
Q  236 atctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||| | | |||||||||||||||    
T  13314972 atctaggagttccttgattgaagtcagtacgg 13315003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 21250116 - 21250228
Alignment:
Q  147 tgtttgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagtt 246  Q
    ||||||||||||||||||||   ||||||||  ||| ||| ||||||| ||||||||||   ||||| |  ||||||||||||||||| ||||||||| |    
T  21250116 tgtttgaaggtaacttcattattttgtgttta-aatatgataatcacaggggctgtgattgattgtaggatagtgagatgagatctcagatctaggagat 21250214  T
Q  247 cataggttgaagtc 260  Q
    | ||||||||||||    
T  21250215 cctaggttgaagtc 21250228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 27107681 - 27107632
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  27107681 agtgagacgagatctcaaatctaggagttcctaggttgaagtcagtacgg 27107632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 27111250 - 27111201
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  27111250 agtgagatgagatctcagatctaggagttcctaggttgaagtaagtacgg 27111201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 20649547 - 20649594
Alignment:
Q  220 tgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  20649547 tgagatgagatctcaaatctaggagttcctaggttgaagccagtacgg 20649594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 257
Target Start/End: Original strand, 26860284 - 26860323
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaa 257  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  26860284 agtgagatgagatctcagatctaggagttcctaggttgaa 26860323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 12910661 - 12910619
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  12910661 agtgagatgggatctcagatctaggagttcctaggttgaagtc 12910619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 22611064 - 22611022
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  22611064 agtgagatgggatctcagatctaggagttcctaggttgaagtc 22611022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 23758797 - 23758755
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  23758797 agtgagatgggatctcagatctaggagttcctaggttgaagtc 23758755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 36398782 - 36398824
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  36398782 agtgagatgggatctcagatctaggagttcctaggttgaagtc 36398824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 12952643 - 12952594
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| |||||||  |||||||| || |||||||||||||||||||    
T  12952643 agtgagatgggatctcaggtctaggagctcctaggttgaagtcagtacgg 12952594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 19198267 - 19198316
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| ||||||| |||| |||||||||||||| ||||    
T  19198267 agtgagatgggatctcagatctaggcgttcctaggttgaagtcagaacgg 19198316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 20475264 - 20475313
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    ||||||||| ||||||| ||||||||| || ||||||||||||| |||||    
T  20475264 agtgagatgggatctcagatctaggagctcctaggttgaagtcaatacgg 20475313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 3392 - 3242
Alignment:
Q  118 aagctctgaagtacggtatttagttgttttgtttgaaggtaacttcatttc-attgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagg 216  Q
    ||||| ||||||||||| ||  ||||| ||||||||||||||||||||||  ||||| ||||  ||||||| |||||| ||| ||||||||||||||||     
T  3392 aagctgtgaagtacggtgttcggttgtgttgtttgaaggtaacttcattttgattgtatttgttatttgagtatcacaagggatgtgatcagttgtaaga 3293  T
Q  217 gagtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||| ||||||| |||||||||||| ||||||||| |||||||||    
T  3292 gagtgagatgggatctcaaatctaggagttcctaggttgaaatcagtacgg 3242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 113 - 265
Target Start/End: Complemental strand, 36573 - 36421
Alignment:
Q  113 cacctaagctctgaagtacggtatttagttgttttgtt-tgaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttg 211  Q
    |||| ||||| ||||| |||||  |||||||||||||| ||||||||||||||||| ||||||| |  ||| ||||||||||| |||||||||| | |||    
T  36573 caccaaagctgtgaagcacggtgattagttgttttgttctgaaggtaacttcatttgattgtgtctataatctgagaatcacaggggctgtgattatttg 36474  T
Q  212 taagggagtgagatgagatctcatatctaggagttcataggttgaagtcagtac 265  Q
    ||||||||||||||| | ||||| |||||||||||| |||||||||||||||||    
T  36473 taagggagtgagatg-ggtctcagatctaggagttcctaggttgaagtcagtac 36421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 103358 - 103227
Alignment:
Q  137 ttagttgttttgttt-gaaggtaacttcatttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcat 235  Q
    ||||||||||||||| ||| |||||||||||| ||||||| || ||  ||||||| ||| ||| |||||||| |||||||||||||||| | |||||||     
T  103358 ttagttgttttgttttgaatgtaacttcatttgattgtgtctgtaaactgagaattacaggggttgtgatcatttgtaagggagtgagaagggatctcag 103259  T
Q  236 atctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||| |||||||||||||||||||    
T  103258 atctaggagttcctaggttgaagtcagtacgg 103227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 267
Target Start/End: Original strand, 45778 - 45903
Alignment:
Q  143 gttttgtttgaaggtaacttcat--ttcattgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatcta 240  Q
    ||||||||| |||||||||||||  ||  |||||||   ||| ||| ||| ||| ||||||| || ||||||| |||||| ||||| ||||||| ||| |    
T  45778 gttttgttttaaggtaacttcatcttttgttgtgttgataatgtgataatgacaagggctgtaattagttgta-gggagtaagatgggatctcagatcaa 45876  T
Q  241 ggagttcataggttgaagtcagtacgg 267  Q
    ||||||| ||||||||||||| |||||    
T  45877 ggagttcttaggttgaagtcaatacgg 45903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 52886 - 52954
Alignment:
Q  188 aatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaa 257  Q
    ||||||| |||| |||||  |||||| |||||||||||| ||||||| |||||||||||| |||||||||    
T  52886 aatcacaggggcagtgattggttgta-gggagtgagatgggatctcagatctaggagttcctaggttgaa 52954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 16201 - 16243
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  16201 agtgagatgagatctcagatctaggagttcctaggttgaagtc 16243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 10024 - 10067
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtca 261  Q
    ||||||||||||||||| |||||||||||| | |||||||||||    
T  10024 agtgagatgagatctcagatctaggagttcctcggttgaagtca 10067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 7528 - 7570
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  7528 agtgagatgggatctcagatctaggagttcctaggttgaagtc 7570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 25661 - 25703
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  25661 agtgagatgggatctcagatctaggagttcgtaggttgaagtc 25703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 37177 - 37135
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  37177 agtgagatgggatctcagatctaggagttcctaggttgaagtc 37135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 61461 - 61503
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  61461 agtgagatgggatctcagatctaggagttcctaggttgaagtc 61503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 48332 - 48373
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagt 259  Q
    ||||||||||||||| | |||||||||||| |||||||||||    
T  48332 agtgagatgagatcttagatctaggagttcctaggttgaagt 48373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 110244 - 110286
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  110244 agtgagatgggatctcaaatctaggagttcctaggttgaagtc 110286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 202612 - 202523
Alignment:
Q  170 ttgtgtttgcaatttgagaatcacacgggctgtgatcagttgtaagggagtgagatgagatctcatatctaggagttcataggttgaagtc 260  Q
    ||||||||| ||| ||| ||||| | ||||||||||  |||||| |  ||||||||| ||||||| |||||| ||||| ||||||||||||    
T  202612 ttgtgtttg-aatctgataatcataggggctgtgattggttgtaggatagtgagatgggatctcagatctagaagttcctaggttgaagtc 202523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 5589 - 5548
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagt 259  Q
    ||||||||| ||||||| |||||||||||| |||||||||||    
T  5589 agtgagatgggatctcagatctaggagttcctaggttgaagt 5548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 13778 - 13729
Alignment:
Q  218 agtgagatgagatctcatatctaggagttcataggttgaagtcagtacgg 267  Q
    |||||||||||||||||  |||| |||||| ||||||||||||| |||||    
T  13778 agtgagatgagatctcaggtctatgagttcctaggttgaagtcaatacgg 13729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 37536 - 37499
Alignment:
Q  220 tgagatgagatctcatatctaggagttcataggttgaa 257  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  37536 tgagatgggatctcatatctaggagttcctaggttgaa 37499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University