View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_high_3 (Length: 356)
Name: NF9549_high_3
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 38 - 346
Target Start/End: Original strand, 39042027 - 39042335
Alignment:
| Q |
38 |
ctcaagattgcttttgatacgatatgtacctaaagatgccgttgataattttatatttttatgtttattggtttaaaataaattcaattagaacaccaag |
137 |
Q |
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| T |
39042027 |
ctcaagattgcttttgatacgatatgtacctaaagatgccgttgataattttatatttttatgtttattggtttaaaataaattcaattagaacaccaag |
39042126 |
T |
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| Q |
138 |
gattatctagttccatgtatgtgacctcagtaagactcttactgaatcatagtaaaattgaaagtttcatcgtctttgttttacatgcagttgaaaaact |
237 |
Q |
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| T |
39042127 |
gattatctagttccatgtatgtgacctcagtaagactcttactgaatcatagtaaaattgaaagtttcatcgtctttgttttacatgcagttgaaaaact |
39042226 |
T |
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| Q |
238 |
gtaatgaagaagttgtgctcagtattattcaaataaaaggctaatgaatccatttatctcattcattcatctgatttgacccttacgttactaaggtatc |
337 |
Q |
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| T |
39042227 |
gtaatgaagaagttgtgctcagtattattcaaataaaaggctaatgaatccatttatctcattcattcatctgatttgacccttacgttactaaggtatc |
39042326 |
T |
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| Q |
338 |
ttccctatg |
346 |
Q |
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| T |
39042327 |
ttccctatg |
39042335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 39041810 - 39041842
Alignment:
| Q |
20 |
aagaggaggatatggatcctcaagattgctttt |
52 |
Q |
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| T |
39041810 |
aagaggaggatatggatcctcaagattgttttt |
39041842 |
T |
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