View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_high_5 (Length: 348)
Name: NF9549_high_5
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_high_5 |
 | |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 2621112 - 2621431
Alignment:
| Q |
19 |
tcaatgtcttcttaaaatatcaatggtgctgatttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621112 |
tcaatgtcttcttaaaatatcaatggtgctgatttgatttcagtataattttcaacacactatttggcctttgcacaagtttttggatggctgttacgat |
2621211 |
T |
|
| Q |
119 |
gagattcattcttggaggtttaaatggtttgcttggaccaatgaaggtatcacccaaaacaatttatattaaatgtttggatttgtatacttgaatatct |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621212 |
gagattcgttcttggaggtttaaatggtttgcttggaccaatgaaggtatcactcaaaacaatttatattaaatgtttggatttgtatacttgaatatct |
2621311 |
T |
|
| Q |
219 |
caaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaataccaagctttaggacaatcaact |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2621312 |
caaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttagagaagaataccaagctttaggacaatcaact |
2621411 |
T |
|
| Q |
319 |
gtaagtctcacaaacctttg |
338 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2621412 |
gtaagtctcacaaacctttg |
2621431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 36549102 - 36549370
Alignment:
| Q |
21 |
aatgtcttcttaaaatatcaatggtgctgatttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatga |
120 |
Q |
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|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
36549102 |
aatgtcttctcataatatcaatggtgctgatttaatttcagtgtaattttcaacacactatttggcctttgcacaagcttttgggtggctgt-------- |
36549193 |
T |
|
| Q |
121 |
gattcattcttggaggtttaaatggtttgcttggaccaatgaaggtatcacccaaaacaatttatattaaatgtttggatttgtatacttgaatatctca |
220 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||| |||||| ||||||| ||||||| | |||| ||||||||||| || |||| ||||||||||| | |
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| T |
36549194 |
gatttgtttttggaggtttaaatggtttgcttggactaatgaatgtatcactcaaaacactctatactaaatgtttggcttagtattcttgaatatctta |
36549293 |
T |
|
| Q |
221 |
aattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatac |
297 |
Q |
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| |||| | |||| ||||||||| ||||||| |||| ||||||||||||||||||| |||| | | ||||||||||| |
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| T |
36549294 |
atttatttttatagtttgtttatcataaccttcttcattaataggcttattcttctaaaatctgtagagaagaatac |
36549370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 2606523 - 2606638
Alignment:
| Q |
52 |
ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatggtttgct |
151 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||| |||| |||||||||||||||||||| | | | || |||||||| |||||||||||||||| |
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| T |
2606523 |
ttgatttcagtatcatcttcaacacactatttggccttagcacgagtttttggatggctgttacaacgcggttttttcttggatgtttaaatggtttgct |
2606622 |
T |
|
| Q |
152 |
tggaccaatgaaggta |
167 |
Q |
| |
|
|||||||||||||||| |
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| T |
2606623 |
tggaccaatgaaggta |
2606638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 26370819 - 26370707
Alignment:
| Q |
55 |
atttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatggtttgcttgg |
154 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| | | || |||||||| ||||||||||||||||||| |
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| T |
26370819 |
atttcagtatcattttcaacacactatttggccttagcacaagtttttggatggctgttacaacacggttttttcttggaagtttaaatggtttgcttgg |
26370720 |
T |
|
| Q |
155 |
accaatgaaggta |
167 |
Q |
| |
|
||||||||||||| |
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|
| T |
26370719 |
accaatgaaggta |
26370707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 16589418 - 16589303
Alignment:
| Q |
52 |
ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatggtttgct |
151 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||||| | || |||||||||||||| || | | ||||| |||| |||||||||||||| |||| |
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| T |
16589418 |
ttgatttcagtgtcattttcaacacattattcggccttagtacgggtttttggatggctattgccaccagatttcttctcggaggtttaaatggcgtgct |
16589319 |
T |
|
| Q |
152 |
tggaccaatgaaggta |
167 |
Q |
| |
|
||||||| | |||||| |
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|
| T |
16589318 |
tggaccagttaaggta |
16589303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 16520898 - 16520834
Alignment:
| Q |
50 |
atttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgtta |
114 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||| | || ||||||||||||||||||| |
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| T |
16520898 |
atttgatttcagtgtcgttctcaacacactttttggccttagtacgagtttttggatggctgtta |
16520834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 16529411 - 16529296
Alignment:
| Q |
52 |
ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatggtttgct |
151 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| | || ||| |||||||||| ||| | |||||| |||| ||| |||||||||| |||| |
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| T |
16529411 |
ttgatttcagtgtcattttcaacacattatttggccttagtacgggttattggatggctattatcacgagatttcttctcggaagtttaaatggcgtgct |
16529312 |
T |
|
| Q |
152 |
tggaccaatgaaggta |
167 |
Q |
| |
|
||| ||| | |||||| |
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|
| T |
16529311 |
tgggccagttaaggta |
16529296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 26370608 - 26370559
Alignment:
| Q |
274 |
tctgaaatttttcgagaagaataccaagctttaggacaatcaactgtaag |
323 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||| ||||||||||| |
|
|
| T |
26370608 |
tctgaaatttttcgagaagaaaagcaagcttttggactctcaactgtaag |
26370559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 199 - 338
Target Start/End: Original strand, 9324872 - 9325009
Alignment:
| Q |
199 |
atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatacc |
298 |
Q |
| |
|
||||| ||||||||||||||||| |||| | |||||||||||||| ||||||||| | |||||||||||||| | |||||||| | ||||||||| || |
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| T |
9324872 |
atttgaatacttgaatatctcaatttatttttataatttgtttatcgtaacctcctacattaataggcttattatcttgaaatttgtagagaagaatgcc |
9324971 |
T |
|
| Q |
299 |
aagctttaggacaatcaactgtaagtctcacaaacctttg |
338 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
9324972 |
aagctttaggacaatcaactctaa--ctcacaaacctttg |
9325009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 338
Target Start/End: Complemental strand, 113057 - 112924
Alignment:
| Q |
199 |
atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatacc |
298 |
Q |
| |
|
||||| ||||||||||||||||| |||| | ||||||||||||| |||||| | |||||||||||||| || |||||||||| ||||||||| || |
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|
| T |
113057 |
atttgaatacttgaatatctcaatttatttttataatttgttta------cctcctacattaataggcttattattttgaaatttttagagaagaatgcc |
112964 |
T |
|
| Q |
299 |
aagctttaggacaatcaactgtaagtctcacaaacctttg |
338 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
112963 |
aagctttaggacaatcaactctaactcacacaaacctttg |
112924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 237 - 122
Alignment:
| Q |
52 |
ttgatttcagtgtaattttcaacacactatttggcctttgcacaagtttttggatggctgttacgatgagattcattcttggaggtttaaatggtttgct |
151 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| | || |||||||||||||| ||| | |||||| |||| ||| |||||||||| |||| |
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|
| T |
237 |
ttgatttcagtgtcattttcaacacattatttggcctcagtacgggtttttggatggctattatcacgagatttcttctcggaagtttaaatggcgtgct |
138 |
T |
|
| Q |
152 |
tggaccaatgaaggta |
167 |
Q |
| |
|
||||||| | |||||| |
|
|
| T |
137 |
tggaccagttaaggta |
122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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