View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_high_7 (Length: 312)
Name: NF9549_high_7
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 11551665 - 11551374
Alignment:
| Q |
1 |
ccacaaagcaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaacattcaaattgaaag |
100 |
Q |
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| T |
11551665 |
ccacaaaggaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaacattcaaattgaaag |
11551566 |
T |
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| Q |
101 |
ttatgagacaaagaagagaggctggtgcgggaagaaaagcctttacaattgacaggttctgcacaagttttactcnnnnnnncatcctctctatatgata |
200 |
Q |
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| T |
11551565 |
ttatgagacaaagaagagaggctggtgcgggaagaaaagccttgacaattgacaggttctgcacaagttttactctttttttcatcctctctatatgata |
11551466 |
T |
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| Q |
201 |
gataggaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaacagaaaatagt |
292 |
Q |
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| T |
11551465 |
gataggaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaacagaaaatagt |
11551374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 11546805 - 11546519
Alignment:
| Q |
1 |
ccacaaagcaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaacattcaaattgaaag |
100 |
Q |
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||||||| ||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11546805 |
ccacaaaacaaattgacattcacacaaaacatctcttgtggctcagg---ttgttggggaactgtgaagagctacatactttggacattcaaattgaaat |
11546709 |
T |
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| Q |
101 |
ttatgagacaaagaagagaggctggtgcgggaagaaaagcctttacaattgacaggttctgcacaagttttactcnnnnnnncatcctctctatatgata |
200 |
Q |
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| T |
11546708 |
ttatgagacaaagaagagaggctggtgtgggaagaaaaaccat-------gacaggttctgcacaagttttactctttttttcatccactctatatgata |
11546616 |
T |
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| Q |
201 |
gatag-----gaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaacagaaaatagt |
292 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11546615 |
gatatcatatgaatgaatcaaagaaaaatggtaactgcattattttgtaagaaagaaaaagggtgacctgaaactgtttcagccaacagaaaatagt |
11546519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 11561998 - 11562107
Alignment:
| Q |
183 |
catcctctctatatgatagataggaatgaatcaaagaaaaatggtaactgcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaac |
282 |
Q |
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||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11561998 |
catccactctatatgattgatatgaatgaatcaaagaaaaatggtaacttcattattttgtatgaaagaaaaagggtgacctgaaactgtttcagccaag |
11562097 |
T |
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| Q |
283 |
agaaaatagt |
292 |
Q |
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|||||||||| |
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| T |
11562098 |
agaaaatagt |
11562107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 11561845 - 11561957
Alignment:
| Q |
1 |
ccacaaagcaaatcgacattcacacaaaatttatcttgtggctcaggcaattgttggggaactgtgaagagctacatactttgaacattcaaat-tgaaa |
99 |
Q |
| |
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||||||| ||||| |||||||||||||||||| ||||| | |||||| || ||||||||||||||||||||| ||||||| ||||||| ||||| |
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| T |
11561845 |
ccacaaaacaaattgacattcacacaaaatttctcttg-------gacaattgatgtggaactgtgaagagctacataatttgaactttcaaatatgaaa |
11561937 |
T |
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| Q |
100 |
gttatgagacaaagaagaga |
119 |
Q |
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|||||||||||||||||| |
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| T |
11561938 |
tctatgagacaaagaagaga |
11561957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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