View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_high_9 (Length: 272)
Name: NF9549_high_9
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 44692690 - 44692441
Alignment:
| Q |
17 |
ctattctccacaatccagctaccttcaagcttccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcacca |
116 |
Q |
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| T |
44692690 |
ctattctccacaatccagctaccttcaagcttccccatacatagatttaactgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcacca |
44692591 |
T |
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| Q |
117 |
tgagtccacacatgcccctccaaatcctccaataaattatttaacaattgttcctcccacacnnnnnnncgccactccaccaccggcccattattcaccc |
216 |
Q |
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| T |
44692590 |
tgagtccacacatgcccctccaaatcctccaataaattatttaacaattgttcctcccacacaaaaaaacgccactccaccaccggcccattattcaccc |
44692491 |
T |
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| Q |
217 |
ccatattcgccaccatagcctctttttggtttgacatagagaataatcta |
266 |
Q |
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| T |
44692490 |
ccatattcgccaccatagcctctttttggtttgacatagagaacaatcta |
44692441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 34866505 - 34866639
Alignment:
| Q |
20 |
ttctccacaatccagctaccttcaagcttccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatga |
119 |
Q |
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| T |
34866505 |
ttctccacaatccatctcccttcaaacttcgc-atacatagatttcaccgtgaatttcccttcgtcttccatcctccacacccatctgtcttcaccgtta |
34866603 |
T |
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| Q |
120 |
gtccacacatgcccctccaaatcctccaataaatta |
155 |
Q |
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| T |
34866604 |
gaccacacatgcccctccaaatcttccaataaatta |
34866639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 34866690 - 34866768
Alignment:
| Q |
188 |
ccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaataatcta |
266 |
Q |
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||||||||||| ||| || |||||||||| || | ||| |||| |||||||||||||| |||||||||||||||||| |
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| T |
34866690 |
ccactccaccatcggaccggtattcaccccaatctccgcaaccaatgcctctttttggttcgacatagagaataatcta |
34866768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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