View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9549_low_1 (Length: 741)

Name: NF9549_low_1
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9549_low_1
NF9549_low_1
[»] chr2 (7 HSPs)
chr2 (10-724)||(13945111-13945811)
chr2 (10-724)||(14086300-14087000)
chr2 (270-593)||(24992608-24992931)
chr2 (421-506)||(9509913-9509998)
chr2 (421-506)||(18655325-18655410)
chr2 (421-506)||(27166129-27166214)
chr2 (421-506)||(45018457-45018542)
[»] chr7 (10 HSPs)
chr7 (270-593)||(610287-610610)
chr7 (418-506)||(9541389-9541477)
chr7 (421-506)||(5388064-5388149)
chr7 (421-506)||(6538584-6538669)
chr7 (421-506)||(8505156-8505241)
chr7 (421-506)||(16138333-16138418)
chr7 (421-506)||(26354448-26354533)
chr7 (421-506)||(32102487-32102572)
chr7 (421-506)||(44901464-44901549)
chr7 (421-506)||(46501221-46501306)
[»] chr6 (11 HSPs)
chr6 (270-593)||(8998401-8998724)
chr6 (383-560)||(27747145-27747322)
chr6 (389-629)||(17946105-17946345)
chr6 (383-593)||(9007684-9007894)
chr6 (304-446)||(11377388-11377527)
chr6 (270-368)||(9007570-9007671)
chr6 (383-481)||(25898162-25898260)
chr6 (421-506)||(16902053-16902138)
chr6 (421-506)||(18164172-18164257)
chr6 (421-506)||(24928314-24928399)
chr6 (421-506)||(31360926-31361011)
[»] chr5 (10 HSPs)
chr5 (270-593)||(724606-724929)
chr5 (277-578)||(15326910-15327211)
chr5 (277-578)||(18711558-18711859)
chr5 (383-481)||(24296793-24296891)
chr5 (391-481)||(24416304-24416394)
chr5 (391-481)||(30450814-30450904)
chr5 (421-506)||(18383847-18383932)
chr5 (421-506)||(20951968-20952053)
chr5 (421-506)||(26198474-26198559)
chr5 (421-506)||(33943427-33943512)
[»] chr4 (5 HSPs)
chr4 (270-593)||(115703-116026)
chr4 (277-578)||(14935860-14936161)
chr4 (391-481)||(54695998-54696088)
chr4 (421-506)||(6696325-6696410)
chr4 (421-506)||(16269163-16269248)
[»] scaffold0096 (1 HSPs)
scaffold0096 (270-593)||(52570-52893)
[»] chr3 (7 HSPs)
chr3 (307-593)||(19688392-19688675)
chr3 (270-444)||(25507621-25507795)
chr3 (393-491)||(2158928-2159026)
chr3 (421-506)||(6426414-6426499)
chr3 (421-506)||(8976953-8977038)
chr3 (421-506)||(9541242-9541327)
chr3 (421-506)||(16405716-16405801)
[»] chr8 (7 HSPs)
chr8 (277-578)||(45495351-45495652)
chr8 (418-506)||(22834842-22834930)
chr8 (391-481)||(20748095-20748185)
chr8 (307-368)||(19754300-19754361)
chr8 (383-481)||(18236395-18236493)
chr8 (383-481)||(18245846-18245944)
chr8 (421-506)||(21209119-21209204)
[»] scaffold0049 (1 HSPs)
scaffold0049 (383-557)||(18656-18830)
[»] scaffold0028 (2 HSPs)
scaffold0028 (383-593)||(85448-85658)
scaffold0028 (391-481)||(100512-100602)
[»] scaffold0021 (1 HSPs)
scaffold0021 (270-546)||(166832-167108)
[»] scaffold0500 (1 HSPs)
scaffold0500 (383-593)||(9611-9821)
[»] scaffold0313 (1 HSPs)
scaffold0313 (421-506)||(13664-13749)
[»] scaffold0003 (1 HSPs)
scaffold0003 (421-506)||(149120-149205)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 10 - 724
Target Start/End: Original strand, 13945111 - 13945811
Alignment:
Q  10 gaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgtt 109  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13945111 gaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgtt 13945210  T
Q  110 caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13945211 caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat 13945310  T
Q  210 gtcattcatagcagattaggatcacaaccaagctgcacttggagaagcatccatcattctaaatattgaaaaatatttttgggc---aagcatcaacact 306  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  13945311 gtcattcatagcagattaggatcacaaccaagctacacttggagaaccatccatcattctaaatattgaaaaatatttttgggcagaaagcatcaacact 13945410  T
Q  307 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnnnngaaatccaaacatttcatattttc 406  Q
    |||||||||||||||||||||||||| |||||         |||||||| |||||||||||||||           |||| |||||||||||||||||||    
T  13945411 tcttgctatattttgaacaaagtgtcgataag---------aaacaaaatcacgtatgaactatg---aaaaaaaagaaagccaaacatttcatattttc 13945498  T
Q  407 gtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactc-----t 501  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||||     |    
T  13945499 gtatctttcaatgttattgttacattttaaacaataaggaaaatttaggcaagtttgattaaaaatcagacaaagctatatttctgggatactctaaatt 13945598  T
Q  502 acaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaatttaatgaat-gtgaagaatttgaaaatcnn 600  Q
    | |||| |||||||||| ||           ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||      
T  13945599 aaaacaacaaaagcctaaag-----------taagaacaagaattgtagaagaaagtatacgtataaaatttaatgaatagtgaagaatttgaaaatcaa 13945687  T
Q  601 nnnnngatcattgaagaagatgaagaagagagtcaaattcactcaaacaaaaaggatgaaaattctcttgaagattctccaaacaaagaatctcctcgaa 700  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13945688 aaaaagatcattgaagaagatgaagaagagagtcaaattcactcaaacaaaaaggatgaaaattctcttcaagattctccaaacaaagaatctcctcgaa 13945787  T
Q  701 gtcctccaagaccatggaaatcaa 724  Q
    ||||||||||||||||||||||||    
T  13945788 gtcctccaagaccatggaaatcaa 13945811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 10 - 724
Target Start/End: Original strand, 14086300 - 14087000
Alignment:
Q  10 gaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgtt 109  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14086300 gaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgtt 14086399  T
Q  110 caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14086400 caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat 14086499  T
Q  210 gtcattcatagcagattaggatcacaaccaagctgcacttggagaagcatccatcattctaaatattgaaaaatatttttgggc---aagcatcaacact 306  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  14086500 gtcattcatagcagattaggatcacaaccaagctacacttggagaaccatccatcattctaaatattgaaaaatatttttgggcagaaagcatcaacact 14086599  T
Q  307 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnnnngaaatccaaacatttcatattttc 406  Q
    |||||||||||||||||||||||||| |||||         |||||||| |||||||||||||||           |||| |||||||||||||||||||    
T  14086600 tcttgctatattttgaacaaagtgtcgataag---------aaacaaaatcacgtatgaactatg---aaaaaaaagaaagccaaacatttcatattttc 14086687  T
Q  407 gtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactc-----t 501  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||||     |    
T  14086688 gtatctttcaatgttattgttacattttaaacaataaggaaaatttaggcaagtttgattaaaaatcagacaaagctatatttctgggatactctaaatt 14086787  T
Q  502 acaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaatttaatgaat-gtgaagaatttgaaaatcnn 600  Q
    | |||| |||||||||| ||           ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||      
T  14086788 aaaacaacaaaagcctaaag-----------taagaacaagaattgtagaagaaagtatacgtataaaatttaatgaatagtgaagaatttgaaaatcaa 14086876  T
Q  601 nnnnngatcattgaagaagatgaagaagagagtcaaattcactcaaacaaaaaggatgaaaattctcttgaagattctccaaacaaagaatctcctcgaa 700  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14086877 aaaaagatcattgaagaagatgaagaagagagtcaaattcactcaaacaaaaaggatgaaaattctcttcaagattctccaaacaaagaatctcctcgaa 14086976  T
Q  701 gtcctccaagaccatggaaatcaa 724  Q
    ||||||||||||||||||||||||    
T  14086977 gtcctccaagaccatggaaatcaa 14087000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 270 - 593
Target Start/End: Original strand, 24992608 - 24992931
Alignment:
Q  270 aaatattgaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| |||| |||||||||||||||  ||| || || || |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  24992608 aaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaatttttaaacaaaaccccgtatgaa 24992707  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgatt 466  Q
    || ||           |||| ||| ||||||| ||||||| ||| |||  ||| |||||||| ||||||||||| ||||| ||   ||  || |||||||    
T  24992708 ctctggaaagaaa---gaaagccagacatttcttattttcatatttttggatgctattgttatattttaaacaacaaagataacctagaaaaatttgatt 24992804  T
Q  467 aaaaatcagacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtat 566  Q
     ||| |||||||||||||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||    
T  24992805 caaagtcagacaaagctatatttcttggttactctgctacttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacat 24992904  T
Q  567 aaaatttaatgaatgtgaagaatttga 593  Q
    ||||||| |||||| ||| ||| ||||    
T  24992905 aaaatttgatgaatttgaggaacttga 24992931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 9509998 - 9509913
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  9509998 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 9509913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 18655325 - 18655410
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  18655325 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 18655410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 27166214 - 27166129
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    ||||| |||||| | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  27166214 tattgctacattctgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 27166129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 45018457 - 45018542
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  45018457 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 45018542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 270 - 593
Target Start/End: Original strand, 610287 - 610610
Alignment:
Q  270 aaatattgaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| |||| |||||||||||||||  ||| || || || |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  610287 aaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaa 610386  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgatt 466  Q
    || ||           |||| ||| ||||||| ||||||| ||| |||  |||||||||||| ||||||||||| ||||| ||   ||| || |||||||    
T  610387 ctctggaaagaaa---gaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgatt 610483  T
Q  467 aaaaatcagacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtat 566  Q
     |||||||||||||||||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||    
T  610484 caaaatcagacaaagctatatttcttggttactctgctacttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacat 610583  T
Q  567 aaaatttaatgaatgtgaagaatttga 593  Q
    ||||||| |||||| ||| ||| ||||    
T  610584 aaaatttgatgaatttgaggaacttga 610610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 506
Target Start/End: Complemental strand, 9541477 - 9541389
Alignment:
Q  418 tgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    ||||||||||||||  | ||||||||||| || |  || ||||||||||  |||||||| |||||||| ||| ||||||||||||||||    
T  9541477 tgttattgttacatactgaacaataaagaaaaattgggtaagtttgattctaaatcagataaagctatctttttaggatactctacaac 9541389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 5388149 - 5388064
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  5388149 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 5388064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 6538584 - 6538669
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  6538584 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 6538669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 8505156 - 8505241
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  8505156 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 8505241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 16138418 - 16138333
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  16138418 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 16138333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 26354533 - 26354448
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  26354533 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 26354448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 32102487 - 32102572
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  32102487 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 32102572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 44901464 - 44901549
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  44901464 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 44901549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 46501221 - 46501306
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  46501221 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 46501306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 270 - 593
Target Start/End: Original strand, 8998401 - 8998724
Alignment:
Q  270 aaatattgaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| |||| |||||||||||||||  ||| || || || |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  8998401 aaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaa 8998500  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgatt 466  Q
    || ||           |||| ||| ||||||| ||||||| ||| |||  |||||||||||| ||||||||||| ||||| ||   ||| || |||||||    
T  8998501 ctctggaaagaaa---gaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgatt 8998597  T
Q  467 aaaaatcagacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtat 566  Q
     |||||||||||||||||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||    
T  8998598 caaaatcagacaaagctatatttcttggttactctgctacttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacat 8998697  T
Q  567 aaaatttaatgaatgtgaagaatttga 593  Q
    ||||||| |||||| ||| ||| ||||    
T  8998698 aaaatttgatgaatttgaggaacttga 8998724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 383 - 560
Target Start/End: Complemental strand, 27747322 - 27747145
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 482  Q
    |||| |||||||||||||||||||  ||||||  ||||||||| || ||| ||||||| ||||| |||  ||| |||||||||| ||||||||||||||     
T  27747322 gaaagccaaacatttcatattttcacatctttggatgttattgctatattctaaacaacaaagataatctaggaaagtttgattcaaaatcagacaaagg 27747223  T
Q  483 tatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtat 560  Q
     |||||| | ||||| ||| | ||||||||||| |||||  | ||||||||||||||||||||| | |||||||||||    
T  27747222 aatatttttgggatattcttccacatcaaaagcatacagaatttacaatttaagaacaagagttcttgaagaaagtat 27747145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 389 - 629
Target Start/End: Original strand, 17946105 - 17946345
Alignment:
Q  389 caaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatt 488  Q
    |||||||||||||||||| ||| |||  |||||||  |||||| || ||||| |||||||  |  || |||||||| | |||||||||||||||  ||||    
T  17946105 caaacatttcatattttcatatttttggatgttatctttacatcttgaacaacaaagacatcttgggaaagtttgactcaaaatcagacaaagcattatt 17946204  T
Q  489 tctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaatttaatgaatgtgaagaa 588  Q
    | | ||||| ||  | |||||||||||||| ||  | || ||| |||||||||||| | ||||||||||||||| ||| |||||| |||||| ||| |||    
T  17946205 tttgggatattcatctacatcaaaagcctatagaatttataatctaagaacaagagctctagaagaaagtatacatatcaaatttgatgaatttgaggaa 17946304  T
Q  589 tttgaaaatcnnnnnnngatcattgaagaagatgaagaaga 629  Q
     |||||||||       ||||||||||||||| || |||||    
T  17946305 cttgaaaatcaaaacaagatcattgaagaagaagatgaaga 17946345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 593
Target Start/End: Original strand, 9007684 - 9007894
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 482  Q
    |||| ||| ||||||| ||||||| ||| |||  |||||||||||| ||||||||||| ||||| ||   ||| || ||||||| ||| |||||||||||    
T  9007684 gaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgattcaaagtcagacaaagc 9007783  T
Q  483 tatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaatttaatgaatgt 582  Q
    ||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||||||||| |||||| |    
T  9007784 tatatttcttggttactctgctacttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacataaaatttgatgaattt 9007883  T
Q  583 gaagaatttga 593  Q
    || ||| ||||    
T  9007884 gaggaacttga 9007894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 446
Target Start/End: Original strand, 11377388 - 11377527
Alignment:
Q  304 acttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnnnngaaatccaaacatttcatatt 403  Q
    |||||||||||||| || |||||||| ||||||||||    ||||||||||||| |||||||||| ||           |||| ||||||||||||||||    
T  11377388 acttcttgctatatcttaaacaaagtttcaataagaatttttttaaacaaaaccccgtatgaactctg---taaaggaagaaagccaaacatttcatatt 11377484  T
Q  404 ttcgtatctttcaatgttattgttacattttaaacaataaaga 446  Q
    |||  ||||||  ||||||||| |||||| ||||||| |||||    
T  11377485 ttcacatctttggatgttattgctacattctaaacaacaaaga 11377527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 9007570 - 9007671
Alignment:
Q  270 aaatattgaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| |||| |||||||||||||||  ||| || || || |||||||| ||||| || | ||| ||||||||||||  ||||||||||||| ||||||||    
T  9007570 aaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaatagagtttcaataagaaaagttttaaacaaaaccccgtatgaa 9007669  T
Q  367 ct 368  Q
    ||    
T  9007670 ct 9007671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 25898162 - 25898260
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  25898162 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 25898260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 16902053 - 16902138
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  16902053 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 16902138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 18164172 - 18164257
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  18164172 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 18164257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 24928399 - 24928314
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  24928399 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 24928314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 31360926 - 31361011
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  31360926 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 31361011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 270 - 593
Target Start/End: Complemental strand, 724929 - 724606
Alignment:
Q  270 aaatattgaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| |||| |||||||||||||||  ||| || || || |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  724929 aaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaa 724830  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgatt 466  Q
    || ||           |||| ||| ||||||| ||||||| ||| |||  |||||||||||| ||||||||||| ||||| ||   ||| || |||||||    
T  724829 ctctggaaagaaa---gaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgatt 724733  T
Q  467 aaaaatcagacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtat 566  Q
     |||||||||||||||||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||    
T  724732 caaaatcagacaaagctatatttctcggttactctgctacttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacat 724633  T
Q  567 aaaatttaatgaatgtgaagaatttga 593  Q
    ||||||| |||||| ||| ||| ||||    
T  724632 aaaatttgatgaatttgaggaacttga 724606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 277 - 578
Target Start/End: Complemental strand, 15327211 - 15326910
Alignment:
Q  277 gaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnn 373  Q
    ||||||||||||||||||  ||| || || || ||||||||||| ||||||| ||| ||||| ||||||  ||||||||||||| |||||||||| ||      
T  15327211 gaaaaatatttttgggcagaagccataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactctgga 15327112  T
Q  374 nnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatc 473  Q
             |||| ||||||||||||||||||| ||| |||   |||||||| |||||  ||||||||||||| | ||  || || ||||| | ||| ||    
T  15327111 aaggaa---gaaagccaaacatttcatattttcatatttttggctgttattgctacatcctaaacaataaagatactttggggaaatttgactcaaagtc 15327015  T
Q  474 agacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaattt 573  Q
    ||||||||| |||||| | ||||| ||| | || |||||||| || ||  | |||||| |||||||||||  | ||||||||||||| | ||| ||||||    
T  15327014 agacaaagcaatatttttgggatattcttctacctcaaaagcatatagaatttacaatctaagaacaagaactctagaagaaagtatgcatatcaaattt 15326915  T
Q  574 aatga 578  Q
     ||||    
T  15326914 gatga 15326910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 277 - 578
Target Start/End: Original strand, 18711558 - 18711859
Alignment:
Q  277 gaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnn 373  Q
    ||||||||||||||||||  ||| || || || ||||||||||| ||||||| ||| ||||| ||||||  ||||||||||||| |||||||||| ||      
T  18711558 gaaaaatatttttgggcagaagccataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactttgga 18711657  T
Q  374 nnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatc 473  Q
             |||| ||||||||||||||||||| ||| |||   |||||||| |||||  ||||||||||||| |  |  || || ||||| | ||| ||    
T  18711658 aaggaa---gaaagccaaacatttcatattttcatatatttggctgttattgctacatcctaaacaataaagataccttggggaaatttgactcaaagtc 18711754  T
Q  474 agacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaattt 573  Q
    ||||||||| |||||| | ||||| ||| | || |||||||| || ||  | |||||| |||||||||||  | ||||||||||||| | ||| ||||||    
T  18711755 agacaaagcaatatttttgggatattcttctacctcaaaagcatatagaatttacaatctaagaacaagaactctagaagaaagtatgcatatcaaattt 18711854  T
Q  574 aatga 578  Q
     ||||    
T  18711855 gatga 18711859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 24296891 - 24296793
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  24296891 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 24296793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 481
Target Start/End: Original strand, 24416304 - 24416394
Alignment:
Q  391 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  24416304 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 24416394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 30450904 - 30450814
Alignment:
Q  391 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  30450904 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 30450814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 18383847 - 18383932
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  18383847 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 18383932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 20951968 - 20952053
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    ||||| |||||| | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  20951968 tattgctacattctgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 20952053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 26198559 - 26198474
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  26198559 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 26198474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 33943427 - 33943512
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  33943427 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 33943512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 270 - 593
Target Start/End: Original strand, 115703 - 116026
Alignment:
Q  270 aaatattgaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| |||| |||||||||||||||  ||| || || || |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  115703 aaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaa 115802  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgatt 466  Q
    || ||           |||| ||| ||||||| ||||||| ||| |||  |||||||||||| ||||||||||| ||||| ||   ||| || |||||||    
T  115803 ctctggaaagaaa---gaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgatt 115899  T
Q  467 aaaaatcagacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtat 566  Q
     |||||||||||||||||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||    
T  115900 caaaatcagacaaagctatatttcttggttactctgctacttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacat 115999  T
Q  567 aaaatttaatgaatgtgaagaatttga 593  Q
    ||||||| |||||| ||| ||| ||||    
T  116000 aaaatttgatgaatttgaggaacttga 116026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 277 - 578
Target Start/End: Original strand, 14935860 - 14936161
Alignment:
Q  277 gaaaaatatttttgggcaa---gcatcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnn 373  Q
    ||||||||||||||||||    |||| || || ||||||||||| ||||||| ||| ||||| ||||||  |||||| |||||| |||||||||| ||      
T  14935860 gaaaaatatttttgggcagaaggcataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaaaaaaaccccgtatgaactctgga 14935959  T
Q  374 nnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatc 473  Q
             |||| ||||||||||||||||||| ||| |||   |||||||| ||||| |||||||||||||| |  |  || || ||||| | ||| ||    
T  14935960 aaggaa---gaaagccaaacatttcatattttcatatatttggctgttattgctacatcttaaacaataaagataccttggggaaatttgactcaaagtc 14936056  T
Q  474 agacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaattt 573  Q
    ||||||||| |||||| | ||||| ||| | ||||||||||| || ||  | |||||| |||||||||||  | || |||||||||| | ||| ||||||    
T  14936057 agacaaagcaatatttttgggatattcttctacatcaaaagcatatagaatctacaatctaagaacaagaactctacaagaaagtatgcatatcaaattt 14936156  T
Q  574 aatga 578  Q
     ||||    
T  14936157 gatga 14936161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 54696088 - 54695998
Alignment:
Q  391 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  54696088 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 54695998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 6696325 - 6696410
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  6696325 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 6696410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 16269163 - 16269248
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  16269163 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 16269248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 270 - 593
Target Start/End: Original strand, 52570 - 52893
Alignment:
Q  270 aaatattgaaaaatatttttgggca--ag-catcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| |||| |||||||||||||||  || ||| || || |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  52570 aaatgttgagaaatatttttgggcagaagacataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaa 52669  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgatt 466  Q
    || ||           |||| ||| ||||||| ||||||| ||| |||  ||| |||||||| ||||||||||| ||||| ||   ||| || |||||||    
T  52670 ctctggaaagaaa---gaaagccagacatttcttattttcatatttttggatgatattgttatattttaaacaacaaagataacctaggaaaatttgatt 52766  T
Q  467 aaaaatcagacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtat 566  Q
     |||||||||||||||||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||    
T  52767 caaaatcagacaaagctatatttcttggttactctgctacttcaaaagcatatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacat 52866  T
Q  567 aaaatttaatgaatgtgaagaatttga 593  Q
    ||||||| |||||| ||| ||| ||||    
T  52867 aaaatttgatgaatttgaggaacttga 52893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 307 - 593
Target Start/End: Original strand, 19688392 - 19688675
Alignment:
Q  307 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnnnngaaatccaaacatttcatattttc 406  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||           |||| ||| ||||||| |||||||    
T  19688392 tcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaa---gaaagccagacatttcttattttc 19688488  T
Q  407 gtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
     ||| |||  |||||||||||| ||||||||||| ||| | ||   ||| || ||||||| ||| |||||||||||||||||||| || ||||||   ||    
T  19688489 atatttttggatgttattgttatattttaaacaacaaatataacctaggaaaatttgattcaaagtcagacaaagctatatttcttggttactctgttac 19688588  T
Q  507 atcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaatttaatgaatgtgaagaatttga 593  Q
     |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||||||||| |||||| ||| ||| ||||    
T  19688589 ttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacataaaatttgatgaatttgaggaacttga 19688675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 270 - 444
Target Start/End: Complemental strand, 25507795 - 25507621
Alignment:
Q  270 aaatattgaaaaatatttttgggca--agca-tcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| ||||||||||||||||||||  || | | || || ||||||||||| ||||||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  25507795 aaatgttgaaaaatatttttgggcagaagaaataaatacctcttgctatatcttgaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaa 25507696  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaa 444  Q
    || ||           |||| | |||||||||||| |||| ||||||| ||||||||||||||||||| |||||||||    
T  25507695 ctctggaaaggaa---gaaagctaaacatttcatactttcatatctttgaatgttattgttacattttgaacaataaa 25507621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 491
Target Start/End: Original strand, 2158928 - 2159026
Alignment:
Q  393 catttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 491  Q
    |||| |||| |||| |||||||  |||||||||||||||||| ||||| ||||| ||||   | |||||||| |  || |||||||||||||| |||||    
T  2158928 cattgcatactttcatatctttggatgttattgttacattttgaacaacaaagataatttgagtaagtttgactctaagtcagacaaagctatttttct 2159026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 6426414 - 6426499
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  6426414 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 6426499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 8976953 - 8977038
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  8976953 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 8977038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 9541242 - 9541327
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  9541242 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 9541327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 16405716 - 16405801
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  16405716 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 16405801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 277 - 578
Target Start/End: Complemental strand, 45495652 - 45495351
Alignment:
Q  277 gaaaaatatttttgggca--agc-atcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnn 373  Q
    ||||||||||||||||||  ||| || || || ||||||||||| ||||||| ||| ||||| ||||||  ||||||||||||| |||||||||| ||      
T  45495652 gaaaaatatttttgggcagaagccataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactctgga 45495553  T
Q  374 nnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatc 473  Q
             |||| ||||||||||||||||||| ||| |||   |||||||| ||||| |||||||||||||| |  |  || || ||||| | ||| ||    
T  45495552 aaggaa---gaaaaccaaacatttcatattttcatatatttggctgttattgctacatcttaaacaataaagataccttggggaaatttgactcaaagtc 45495456  T
Q  474 agacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaattt 573  Q
    ||||||||| |||||| | ||||| ||| | ||||||||||| || ||  | |||||| |||||||||||  | ||||||||||||| | ||| ||||||    
T  45495455 agacaaagcaatatttttgggatattcttctacatcaaaagcatatagaatctacaatctaagaacaagaactctagaagaaagtatgcatatcaaattt 45495356  T
Q  574 aatga 578  Q
     ||||    
T  45495355 gatga 45495351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 506
Target Start/End: Original strand, 22834842 - 22834930
Alignment:
Q  418 tgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||| |||||| | ||||||||||| || |  || ||||||||| | |||||||| |||||||| ||| ||||||||||||||||    
T  22834842 tgttattgctacattctgaacaataaagaaaaattgggtaagtttgatcataaatcagataaagctatctttttaggatactctacaac 22834930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 481
Target Start/End: Original strand, 20748095 - 20748185
Alignment:
Q  391 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    ||||| |||||||||| ||| |||  |||||||||||| |||||||| |||||||| |||  ||  |||||||||| ||||||||| ||||    
T  20748095 aacatctcatattttcatatttttggatgttattgttatattttaaataataaagaaaatctagaaaagtttgattcaaaatcagataaag 20748185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 19754300 - 19754361
Alignment:
Q  307 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaact 368  Q
    |||||||||||||| || | ||| ||||||||||||  ||||||||||||| ||||||||||    
T  19754300 tcttgctatattttaaatagagtctcaataagaaaagttttaaacaaaaccccgtatgaact 19754361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 18236395 - 18236493
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  18236395 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 18236493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 481
Target Start/End: Original strand, 18245846 - 18245944
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  18245846 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 18245944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Complemental strand, 21209204 - 21209119
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    |||||||||||  | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  21209204 tattgttacatactgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 21209119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 383 - 557
Target Start/End: Original strand, 18656 - 18830
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 482  Q
    |||| |||||||||||||||||||  ||||||  ||| ||||| || ||| ||||||| | ||| | ||  || |||||||| | ||||||||||||||     
T  18656 gaaagccaaacatttcatattttcacatctttggatgctattgctatattctaaacaacagagatagtttgggaaagtttgactcaaaatcagacaaagg 18755  T
Q  483 tatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaag 557  Q
     |||||| | ||||| ||| | ||||||||||| |||||  | ||||||||||||||||||||| | ||||||||    
T  18756 aatatttttgggatattcttccacatcaaaagcttacagaatttacaatttaagaacaagagttcttgaagaaag 18830  T

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Target: scaffold0028 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 383 - 593
Target Start/End: Original strand, 85448 - 85658
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 482  Q
    |||| ||||||||||| || |||| ||| |||  ||| |||||||| ||||||||||| ||||| ||   ||  || ||||||| ||| |||||||||||    
T  85448 gaaagccaaacatttcttaatttcatatttttggatgctattgttatattttaaacaacaaagagaacctagaaaaatttgattcaaagtcagacaaagc 85547  T
Q  483 tatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaatttaatgaatgt 582  Q
    ||||||||| || |||||| | || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||||||||| |||||| |    
T  85548 tatatttcttggttactctgctacttcaaaagcttatagggtgtataacttgagaacaaaagttctagaagaaagtatgcacataaaatttgatgaattt 85647  T
Q  583 gaagaatttga 593  Q
    || ||| ||||    
T  85648 gaggaacttga 85658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 100602 - 100512
Alignment:
Q  391 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 481  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  100602 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 100512  T

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Target: scaffold0021 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 270 - 546
Target Start/End: Original strand, 166832 - 167108
Alignment:
Q  270 aaatattgaaaaatatttttgggca---agcatcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaa 366  Q
    |||| ||||||| ||||||||||||   | ||| || |||||||||||||| || |||| ||| ||||||||||||  ||||||||||||| | ||||||    
T  166832 aaatgttgaaaagtatttttgggcagaaaccataaatacttcttgctatatcttaaacagagtttcaataagaaaagttttaaacaaaaccccatatgaa 166931  T
Q  367 ctatgnnnnnnnnnnngaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgatt 466  Q
    || ||           |||| |||||||||||||||||||  ||||||  ||||||||| || ||| ||||||| ||||| | |    | ||||||||      
T  166932 ctctg---gaaagggagaaagccaaacatttcatattttcacatctttggatgttattgctatattctaaacaacaaagatagtctgagaaagtttgacc 167028  T
Q  467 aaaaatcagacaaagctatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagtt 546  Q
     ||||||||| ||||  |||||| | ||||| ||| | ||||||||||| |||||  | |||||||||||||||||||||    
T  167029 caaaatcagataaaggaatatttttgggatattcttccacatcaaaagcttacagaatctacaatttaagaacaagagtt 167108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 383 - 593
Target Start/End: Original strand, 9611 - 9821
Alignment:
Q  383 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 482  Q
    |||| ||||||||||| ||||||| ||| |||  |||  ||||||| ||||||||||| ||||| ||   ||| || ||||||| ||| |||||||||||    
T  9611 gaaagccaaacatttcttattttcatatttttggatgcaattgttatattttaaacaacaaagataacctaggaaaatttgattcaaagtcagacaaagc 9710  T
Q  483 tatatttctaggatactctacaacatcaaaagcctacaggttatacaatttaagaacaagagttgtagaagaaagtatacgtataaaatttaatgaatgt 582  Q
    ||||||||| || |||||    || |||||||| || ||| | || || || ||||||| |||| ||||||||||||| |  ||||||||| |||||| |    
T  9711 tatatttcttggttactcagatacttcaaaagcttatagggtgtataacttgagaacaaaagttatagaagaaagtatgcacataaaatttgatgaattt 9810  T
Q  583 gaagaatttga 593  Q
    || ||| ||||    
T  9811 gaggaacttga 9821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 13664 - 13749
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    ||||| |||||| | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  13664 tattgctacattctgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 13749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 149120 - 149205
Alignment:
Q  421 tattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttctaggatactctacaac 506  Q
    ||||| |||||| | ||||||||||| || |  || |||||||||   |||||||| |||||||| ||| ||||||||||||||||    
T  149120 tattgctacattctgaacaataaagaaaaattgggtaagtttgatcctaaatcagataaagctatctttttaggatactctacaac 149205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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