View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9549_low_12 (Length: 356)

Name: NF9549_low_12
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9549_low_12
NF9549_low_12
[»] chr2 (1 HSPs)
chr2 (1-356)||(43376138-43376493)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 43376138 - 43376493
Alignment:
Q  1 ccatttcatgatggaaagggattttctgatcaggtggagattcattggcagtgaagacacggccgacgacgttggtgcgtggtgcagcgccgccgatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43376138 ccatttcatgatggaaagggattttctgatcaggtggagattcattggcagtgaagacacggccgacgacgttggtgcgtggtgcagcgccgccgatgta 43376237  T
Q  101 ggggagttcggcgtaatcaaaggcttcgacgagggagttgaaatgggaggcggtttggagagagaagttacggaggaggatcgcgccggagtggtggagg 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43376238 ggggagttcggcgtaatcaaaggcttccacgagggagttgaaatgggaggcggtttggagagagaagttacggaggaggatcgcgccggagtggtggagg 43376337  T
Q  201 agggattcgagatagggtttgtgggttttgattgtgtgtgttgcgtttagagggagtgtacgtggagttacgattgctgggaatggggttccgtttggga 300  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43376338 agggattcgaaatacggtttgtgggttttgattgtgtgtgttgcgtttagagggagtgtacgtggagttacgattgctgggaatggggttccgtttggga 43376437  T
Q  301 gaagcttttgttcggggatttggatttctaccaacgcgttttctagttgtgtggac 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43376438 gaagcttttgttcggggatttggatttctaccaacgcgttttctagttgtgtggac 43376493  T

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