View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9549_low_19 (Length: 335)
Name: NF9549_low_19
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_low_19 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 4558235 - 4558533
Alignment:
| Q |
18 |
aaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4558235 |
aaaatgtacatgcattggatggactaaagaaaacagaagggattgaaagttcttcagaagcttgtatggtaaaagacatgccaatatcagaaactatgca |
4558334 |
T |
|
| Q |
118 |
agtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558335 |
agtaactggagggacaagaccagatgttgcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaaga |
4558434 |
T |
|
| Q |
218 |
gcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcattt |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
4558435 |
gcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaaccatccggaatagtctcaaagctaaaatcagtgaaaccatcaaaggcattt |
4558533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 4572077 - 4572375
Alignment:
| Q |
19 |
aaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
4572077 |
aaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgctaatatcagaaactatgcaa |
4572176 |
T |
|
| Q |
119 |
gtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagag |
218 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
4572177 |
ctaactggacggacaagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtagaaaattcttcctgattgatttacaaagag |
4572276 |
T |
|
| Q |
219 |
cgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcatttt |
317 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4572277 |
cgtaaatgtcttgactaacatcgccatcgccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcatttt |
4572375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 316
Target Start/End: Original strand, 4586748 - 4587040
Alignment:
| Q |
24 |
tacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaac |
123 |
Q |
| |
|
|||||||| ||| |||| |||||||||| | | || |||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||| || |
|
|
| T |
4586748 |
tacatgcactggctggattaaagaaaacaagtgggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgac |
4586847 |
T |
|
| Q |
124 |
tggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgt |
223 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4586848 |
tggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtaa |
4586947 |
T |
|
| Q |
224 |
atgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcattt |
316 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||| || ||| |||||||||||||| |
|
|
| T |
4586948 |
atgtcttgactaacatcaccatcaccatccgttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaatcatcaaaggcattt |
4587040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 4581130 - 4581415
Alignment:
| Q |
24 |
tacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaac |
123 |
Q |
| |
|
|||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
4581130 |
tacatgcactggctggactaaagaaaacaacagggattgaaagttcttcagcagcttgtattgtaaaatacatgctattatcagaaactatgcaagtaac |
4581229 |
T |
|
| Q |
124 |
tggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgt |
223 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||| | | |
|
|
| T |
4581230 |
tggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagttctttctgattgattcacatagagcatat |
4581329 |
T |
|
| Q |
224 |
atgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaa |
309 |
Q |
| |
|
||||||||| ||||||| | ||| || || | |||| |||||||||||||||| |||||||| |||||| ||||||||||||||| |
|
|
| T |
4581330 |
atgtcttgattaacatcactatcgccttctatcggagttaaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaa |
4581415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 4612743 - 4612438
Alignment:
| Q |
17 |
caaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
4612743 |
caaaatgtacatgcattggctggactaaagaaaacaacagggattgaaagttcttcaccagcttgtatggtaaaagacatgctattatcagcaattatgc |
4612644 |
T |
|
| Q |
117 |
aagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaag |
216 |
Q |
| |
|
| ||||| ||||||||||||||||| || |||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4612643 |
acgtaaccggagggacaagaccagaagtggcagagtcattaagtctagaaataagttcgcgaaaaggttgtaggaagttctttctgattgattcacaaag |
4612544 |
T |
|
| Q |
217 |
agcgtgtatgtcttgactaacatcgccatcaccatc-----cg-ttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaag |
310 |
Q |
| |
|
||| | |||||||||||||||||| ||||||||||| || ||| || || ||||||||| ||| ||||||| |||||| ||||||||| ||||| |
|
|
| T |
4612543 |
agcatatatgtcttgactaacatcaccatcaccatcgccttcgtttgaaggtagaccatctggtatagcctcaaaggtaaaatcagtgaaaccaacaaag |
4612444 |
T |
|
| Q |
311 |
gcattt |
316 |
Q |
| |
|
|||||| |
|
|
| T |
4612443 |
gcattt |
4612438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 4599276 - 4599560
Alignment:
| Q |
20 |
aatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | || | |||||||||||||||| ||||||| ||||| |||||| | |||| ||||| ||||| |
|
|
| T |
4599276 |
aatgtacatgcattggatggactaaagagaacaataggaagtgaaagttcttcagcaacttgtatagtaaaggacatgttccaatca-taactaagcaag |
4599374 |
T |
|
| Q |
120 |
taactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagc |
219 |
Q |
| |
|
|||||||||||| |||||||| || ||| |||| |||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
4599375 |
taactggagggataagaccagcagtagaagactcatagagtctagcaagaagttcgcgaaatggttggaggaagttatttctgattgatttacagagaga |
4599474 |
T |
|
| Q |
220 |
gtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccat |
305 |
Q |
| |
|
| |||||| || ||||||| ||||||||||| |||||| |||||||||||||||| |||| ||| ||||| |||||||||| |
|
|
| T |
4599475 |
atttatgtcctgtgtaacatcaccatcaccatctattggagttaaaccatctggaatagtctcgaaggaaaaatcagtgaaaccat |
4599560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 4298468 - 4298225
Alignment:
| Q |
66 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
165 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||||||| || |||||||||| || |||| ||| ||| |||| |
|
|
| T |
4298468 |
gttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcagaatcacgaagtttagc |
4298369 |
T |
|
| Q |
166 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaa |
265 |
Q |
| |
|
||||||||| | || || || |||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||||||| | | |
|
|
| T |
4298368 |
aagaagttcaccaaagggctgaaggaagttctttctgattgattgggaaagagatggtatgtcttgagtaacatctccatcaccttccgttggagtcaga |
4298269 |
T |
|
| Q |
266 |
ccatctggaatactctcaaagttaaaattggtgaaaccatcaaa |
309 |
Q |
| |
|
|||||||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
4298268 |
ccatctggaatagtctcaaagctaaagttggtgaaaccatcaaa |
4298225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 103 - 316
Target Start/End: Complemental strand, 4489130 - 4488917
Alignment:
| Q |
103 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
202 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| || |||||||||| ||| ||||||||| | | | || ||| | || || || || |
|
|
| T |
4489130 |
atcagaaactaagcaagtaactggagggataagaccagcagtagcagagtcattaagtttagcaagaaatacaccaaagaattggtgaaaattgttcatg |
4489031 |
T |
|
| Q |
203 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaac |
302 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||| || |||| |
|
|
| T |
4489030 |
attgatagacaaagagcgcgtaaatcttgactaacatcgccatcaccatctgttggagttaaaccatctggaatagtctcaaagctaaaatcagttaaac |
4488931 |
T |
|
| Q |
303 |
catcaaaggcattt |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4488930 |
catcaaaggcattt |
4488917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 103 - 317
Target Start/End: Original strand, 4507106 - 4507320
Alignment:
| Q |
103 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
202 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||| | ||||||||| |||||||| ||||||||||| ||||| | | || |||||||| |
|
|
| T |
4507106 |
atcagaaactaagcaagtaacaggaggcacaagaccagatttcgcagagtcatcaagtctagctagaagttcgcgaaaagggtaaataaatttctttcta |
4507205 |
T |
|
| Q |
203 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaac |
302 |
Q |
| |
|
|| |||| || || || | | |||| || ||||||| |||||||||||| |||||| |||||||||||| | | ||||||||||||||| ||||||| |
|
|
| T |
4507206 |
atcgattcacgaatagatttcaagtctggattaacatcaccatcaccatccattggagttaaaccatctggtagagtctcaaagttaaaatcagtgaaac |
4507305 |
T |
|
| Q |
303 |
catcaaaggcatttt |
317 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4507306 |
catcaaaggcatttt |
4507320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 312
Target Start/End: Original strand, 4623467 - 4623711
Alignment:
| Q |
68 |
tcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaa |
167 |
Q |
| |
|
||||||||||||||||| ||||| |||||| | ||| ||||||| |||||||||||| || |||||||||| || ||||||||| ||| | |||| |
|
|
| T |
4623467 |
tcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatgaagttttgcaa |
4623566 |
T |
|
| Q |
168 |
gaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaacc |
267 |
Q |
| |
|
||||||| | || || || ||| ||||| || ||||| | | |||||| | ||||||||||||||||||| |||||||| ||| |||| | |||||| |
|
|
| T |
4623567 |
gaagttcacaaaagggatgatagaaattcttccttattgaatcagaaagagagggtatgtcttgactaacatcaccatcaccttccattggtgttaaacc |
4623666 |
T |
|
| Q |
268 |
atctggaatactctcaaagttaaaattggtgaaaccatcaaaggc |
312 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||||||||||||| |
|
|
| T |
4623667 |
atctggaatggtctcaaagttaaagtccgtgaaaccatcaaaggc |
4623711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 4561945 - 4562071
Alignment:
| Q |
191 |
aagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaa |
290 |
Q |
| |
|
|||||| || ||||||||| || ||||| ||||| ||||||||||| ||| |||||||||||| |||||| |||||||||||| ||| |||||||||||| |
|
|
| T |
4561945 |
aagttcgttatgattgattcaccaagagagtgtaggtcttgactaatatcaccatcaccatcctttggagttaaaccatctggtatagtctcaaagttaa |
4562044 |
T |
|
| Q |
291 |
aattggtgaaaccatcaaaggcatttt |
317 |
Q |
| |
|
| | |||||||||||||||||||||| |
|
|
| T |
4562045 |
agtcagtgaaaccatcaaaggcatttt |
4562071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 66 - 317
Target Start/End: Original strand, 4627308 - 4627559
Alignment:
| Q |
66 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
165 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||| ||||||| |||||||||||| | |||||||||| || | ||||||| ||| |||| |
|
|
| T |
4627308 |
gttcttcagcagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtcatgaagtttagc |
4627407 |
T |
|
| Q |
166 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaa |
265 |
Q |
| |
|
||||||||| | || || || |||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||| || ||| | |||| |
|
|
| T |
4627408 |
aagaagttcaccaaagggctgaaggaagttctttcttattgattgggaaagagatggtatgtcttgagtaacatcgccatcaccttctagtggtgttaaa |
4627507 |
T |
|
| Q |
266 |
ccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcatttt |
317 |
Q |
| |
|
|||||||| || |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
4627508 |
ccatctggtatggtctcaaaggtaaaatcatcgaaaccatcaaaggcatttt |
4627559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 4575738 - 4575864
Alignment:
| Q |
191 |
aagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaa |
290 |
Q |
| |
|
|||||| || ||||||||| || ||||| ||||| ||||||||| ||||| |||| ||||||| |||||| |||||||||||| ||| |||||||||||| |
|
|
| T |
4575738 |
aagttcgttatgattgattcaccaagagagtgtaggtcttgacttacatcaccattaccatcctttggagttaaaccatctggtatagtctcaaagttaa |
4575837 |
T |
|
| Q |
291 |
aattggtgaaaccatcaaaggcatttt |
317 |
Q |
| |
|
| | |||||||||||||||||||||| |
|
|
| T |
4575838 |
agtcagtgaaaccatcaaaggcatttt |
4575864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 191 - 316
Target Start/End: Original strand, 3173286 - 3173411
Alignment:
| Q |
191 |
aagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaa |
290 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||| ||||||||||||||| |||||||| ||| ||| || |||||||||||| ||| |||||||||||| |
|
|
| T |
3173286 |
aagttcttgatgattgatcgacaaagagcgcgtaagtcttgactaacatcaccatcaccttccattgaagttaaaccatctggtatagtctcaaagttaa |
3173385 |
T |
|
| Q |
291 |
aattggtgaaaccatcaaaggcattt |
316 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
3173386 |
aatcattgaaaccatcaaaggcattt |
3173411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 68 - 317
Target Start/End: Complemental strand, 4259144 - 4258895
Alignment:
| Q |
68 |
tcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaa |
167 |
Q |
| |
|
||||||||||||||||| |||| |||||| | ||||||||||| ||||||||| || || |||| ||||| || | ||||| | ||| |||||| |
|
|
| T |
4259144 |
tcttcagcagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtcttgaagtttagcaa |
4259045 |
T |
|
| Q |
168 |
gaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaacc |
267 |
Q |
| |
|
||||||| | || || || |||||||||||||| || |||| | |||| | | ||| ||||||| |||||||||||||||| ||| ||||| | ||| |
|
|
| T |
4259044 |
gaagttcaccaaagggctgaaggaagttctttcttatagattgagaaagggagggtacgtcttgagtaacatcgccatcaccttccactggagtcagacc |
4258945 |
T |
|
| Q |
268 |
atctggaatactctcaaagttaaaattggtgaaaccatcaaaggcatttt |
317 |
Q |
| |
|
|||| ||||| |||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
4258944 |
atcttgaatagtctcaaaggtaaaatcaatgaaaccatcaacggcatttt |
4258895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 188 - 309
Target Start/End: Original strand, 4618581 - 4618702
Alignment:
| Q |
188 |
aggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagt |
287 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| ||| |||||||||||||| |||||||| ||| |||| | ||||||||||||||| |||||||||| |
|
|
| T |
4618581 |
aggaagttctttcttactgattgacaaagagttggtacatcttgactaacatcaccatcaccttccattggtgttaaaccatctggaatgctctcaaagt |
4618680 |
T |
|
| Q |
288 |
taaaattggtgaaaccatcaaa |
309 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
4618681 |
taaagtccgtgaaaccatcaaa |
4618702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 312
Target Start/End: Original strand, 4517498 - 4517744
Alignment:
| Q |
66 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
165 |
Q |
| |
|
||||||||||||||||||| ||||||| || | |||||||||||||| |||| |||| ||||| | | ||||| | ||| || || |||||||| |
|
|
| T |
4517498 |
gttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaacaggaggaatatgaccatcattggaagaatctttaagtctagc |
4517597 |
T |
|
| Q |
166 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaa |
265 |
Q |
| |
|
||||||||| | ||| || || ||| |||||||| ||||| | |||||| | ||||||||||||||||| ||||| || || | |||| |||| |
|
|
| T |
4517598 |
aagaagttcacagaaggggtgatagaaattctttcttattgaatcggaaagagagataatgtcttgactaacatcaccatcgccttctatcggagttaaa |
4517697 |
T |
|
| Q |
266 |
ccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggc |
312 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
4517698 |
ccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc |
4517744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 316
Target Start/End: Complemental strand, 4503226 - 4503013
Alignment:
| Q |
103 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
202 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| || |||||||||| ||| || |||||| ||| | || ||| | || ||||| || |
|
|
| T |
4503226 |
atcagaaactaagcaagtaactggagggataagaccagcagtggcagagtcattaagtttaacaagaaattcaccaaagaattggtgaaaattcttcttg |
4503127 |
T |
|
| Q |
203 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaac |
302 |
Q |
| |
|
|||||| | | |||||| ||| ||||||||||||||| |||||||| ||| |||| |||||||||||| || |||||||| |||||| |||||| |
|
|
| T |
4503126 |
attgatagatagagagcgcgtaagtcttgactaacatcaccatcaccttccaccggagttaaaccatctggtatggtctcaaaggtaaaatcattgaaac |
4503027 |
T |
|
| Q |
303 |
catcaaaggcattt |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4503026 |
catcaaaggcattt |
4503013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 4569393 - 4569478
Alignment:
| Q |
227 |
tcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggc |
312 |
Q |
| |
|
|||||||||| ||| |||| ||| || || |||| |||||||||||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
4569393 |
tcttgactaatatcaccataaccttctgtcggagttaaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggc |
4569478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 315
Target Start/End: Complemental strand, 4513954 - 4513700
Alignment:
| Q |
64 |
aagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtcta |
163 |
Q |
| |
|
||||||||||||| ||||| | ||||| | ||| || ||||||||||| ||||||||| ||| | |||||| | | || |||||||||| ||| || |
|
|
| T |
4513954 |
aagttcttcagcaacttgtgtagtaaatggcataatacaatcagaaactaagcaagtaacaaaaggtataagaccggcttttgcagagtcattaagttta |
4513855 |
T |
|
| Q |
164 |
gcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatca---ccatccgttggag |
260 |
Q |
| |
|
|| | ||||||||| ||||||| | | | |||||||||||||||| | ||||| | ||||||| || |||| ||| || |||||| |||||| |
|
|
| T |
4513854 |
gctaaaagttcgcgaaaaggttcgatgcaattctttctgattgattcgcgaagagatatcaagtcttgagtagcatcaccaccatcgccatccattggag |
4513755 |
T |
|
| Q |
261 |
ataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcatt |
315 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
4513754 |
ttaaaccatcaggaatagtctcaaagcgaaaatcggtgaaaccatcaaaagcatt |
4513700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 316
Target Start/End: Original strand, 4594250 - 4594418
Alignment:
| Q |
148 |
agagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatca |
247 |
Q |
| |
|
||||||||| ||||| | ||||||||| | || |||| ||||| |||||||| || |||| | ||||| | ||||||||||||||||||| |||||| |
|
|
| T |
4594250 |
agagtcattaagtcttgtaagaagttcacaaaagggtttaaggaaattctttcttatagattgagcaagagagggtatgtcttgactaacatcaccatca |
4594349 |
T |
|
| Q |
248 |
ccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaaaggcattt |
316 |
Q |
| |
|
|| ||| |||| | || ||||||||| || | |||||| ||||| | ||||||||| ||||||||| |
|
|
| T |
4594350 |
ccttccattggtgttagaccatctggtatggtttcaaagctaaaaccagggaaaccatctaaggcattt |
4594418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 4255607 - 4255551
Alignment:
| Q |
68 |
tcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaact |
124 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||| |||||||||| |
|
|
| T |
4255607 |
tcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaact |
4255551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 4471112 - 4471183
Alignment:
| Q |
103 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttc |
174 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| || ||||| ||| ||||||| ||||||||| |
|
|
| T |
4471112 |
atcagaaattatgcaagtaactggagggataagaccagcagtggcagaggcatcaagtctagtaagaagttc |
4471183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 16685312 - 16685030
Alignment:
| Q |
18 |
aaaatgtacatgcattggatggactaaagaaaacgacagcgattgaaagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgca |
117 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16685312 |
aaaatgtacatgcattcgatggattaaagagaacaacagggagtgaaagttcttcagcagcttgtatagtaaaagacatgctaatatcagaaactatgca |
16685213 |
T |
|
| Q |
118 |
agtaactggagggacaagaccagatgtttcagagt-------catttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctgattgattt |
210 |
Q |
| |
|
|||||||||||||||||||||||||| | || || ||| |||||||||||| ||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
16685212 |
agtaactggagggacaagaccagatgatgcaccgtgcacggtcatgaagtctagcaagatgttcgcgaaagggttggaggaagttctttctgattgattt |
16685113 |
T |
|
| Q |
211 |
acaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||| |
|
|
| T |
16685112 |
acaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaaccatatggaatagtctcaaagctaaaat |
16685030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 20862776 - 20862600
Alignment:
| Q |
64 |
aagttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtcta |
163 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| | |||||||||||| ||||||||| ||||| | |||||||||| | |||||||| ||| | |
|
|
| T |
20862776 |
aagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccagatttggaagagtcatgaagtttg |
20862677 |
T |
|
| Q |
164 |
gcaagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatc |
240 |
Q |
| |
|
||||||||||| || ||| | | ||||||| |||||||| ||| || ||||| || | ||||||||||||||| |
|
|
| T |
20862676 |
gcaagaagttcacgaaaactgtcgatgaagttcgttctgattaattcacgaagagattggaagtcttgactaacatc |
20862600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 67 - 308
Target Start/End: Complemental strand, 2423 - 2179
Alignment:
| Q |
67 |
ttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagca |
166 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||||||| || ||| |||||||||| ||||||||| | |||| || | ||||||||| |
|
|
| T |
2423 |
ttcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagca |
2324 |
T |
|
| Q |
167 |
agaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatc---cgttggagata |
263 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||| |||| | ||||| || |
|
|
| T |
2323 |
agaagttcgcgaaagaagtgaaggaagttttttctgattgatttacaaagagagagtatgtcttgactaacattaccatcatcatcttccactggagtta |
2224 |
T |
|
| Q |
264 |
aaccatctggaatactctcaaagttaaaattggtgaaaccatcaa |
308 |
Q |
| |
|
||||||| |||||| |||| ||| ||||| | ||||||||||| |
|
|
| T |
2223 |
aaccatcgggaatagtctcgaagcaaaaatcagcgaaaccatcaa |
2179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 308
Target Start/End: Original strand, 2016 - 2224
Alignment:
| Q |
103 |
atcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttctttctg |
202 |
Q |
| |
|
||||||||||| || ||| |||||||||| ||||||||| | |||| || | |||||||||||||||||||| || || |||||||| |||||| |
|
|
| T |
2016 |
atcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctg |
2115 |
T |
|
| Q |
203 |
attgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatc---cgttggagataaaccatctggaatactctcaaagttaaaattggtga |
299 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||| |||| | ||||| ||||||||| |||||| |||| ||| ||||| | || |
|
|
| T |
2116 |
attgatttacaaagagagagtatgtcttgactaacattaccatcatcatcttccactggagttaaaccatcgggaatagtctcgaagcaaaaatcagcga |
2215 |
T |
|
| Q |
300 |
aaccatcaa |
308 |
Q |
| |
|
||||||||| |
|
|
| T |
2216 |
aaccatcaa |
2224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 248
Target Start/End: Complemental strand, 3492 - 3310
Alignment:
| Q |
66 |
gttcttcagcagcttgtatggtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagaccagatgtttcagagtcatttagtctagc |
165 |
Q |
| |
|
||||||||||||||||||||||||| | |||| | ||||| ||||||||||||||| | || |||||||||| || ||||||||| ||| || | |
|
|
| T |
3492 |
gttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccagcagtggcagagtcatgaagtttaac |
3393 |
T |
|
| Q |
166 |
aagaagttcgcggaaaggttgtaggaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcac |
248 |
Q |
| |
|
||||||||| ||| || || | ||| ||| |||| || |||| | ||||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
3392 |
aagaagttcattgaagggctgaaagaaattcgttcttatagattgaacaagagagggtatgtcttgagtaacatcaccatcac |
3310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 3088063 - 3088145
Alignment:
| Q |
226 |
gtcttgactaacatcgccatcaccatccgttggagataaaccatctggaatactctcaaagttaaaattggtgaaaccatcaa |
308 |
Q |
| |
|
||||||||||||||| |||| ||| ||| |||||| || ||||||| | ||| |||||||| ||||| ||||||||||||| |
|
|
| T |
3088063 |
gtcttgactaacatcaccattaccttccattggagttagaccatcttggatagtctcaaagacaaaatcagtgaaaccatcaa |
3088145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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