View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9549_low_20 (Length: 322)

Name: NF9549_low_20
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9549_low_20
NF9549_low_20
[»] chr1 (2 HSPs)
chr1 (78-310)||(28668319-28668541)
chr1 (226-306)||(46080972-46081052)
[»] chr5 (3 HSPs)
chr5 (226-303)||(973112-973189)
chr5 (226-295)||(7982259-7982329)
chr5 (266-303)||(972925-972962)
[»] chr4 (2 HSPs)
chr4 (226-303)||(22050853-22050930)
chr4 (68-198)||(25062330-25062460)
[»] chr7 (3 HSPs)
chr7 (107-198)||(31171396-31171487)
chr7 (226-300)||(34891534-34891608)
chr7 (226-262)||(16971822-16971858)
[»] chr3 (3 HSPs)
chr3 (246-309)||(20519287-20519350)
chr3 (230-295)||(42091796-42091861)
chr3 (62-130)||(46303375-46303443)
[»] chr8 (2 HSPs)
chr8 (161-199)||(6803875-6803913)
chr8 (121-199)||(32166734-32166812)
[»] chr2 (1 HSPs)
chr2 (101-198)||(9050229-9050326)
[»] scaffold0136 (1 HSPs)
scaffold0136 (105-205)||(36900-37000)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 78 - 310
Target Start/End: Original strand, 28668319 - 28668541
Alignment:
Q  78 atttctatctacagaacataaaacattttcatctgttttgttcaacatgtgattttcacctattttgtttcataatcggatcttacttgtcattgggggt 177  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  28668319 atttctatctacagaacataaaacattttcatctatttcgttcaacatgtgattttcacctattttgtttcataatcggatcttacttgtcattgaggat 28668418  T
Q  178 aaataactcccaattcatcaaaaagtaatgtacgcctcgtaatttttgttttcttacaattagttaatatttttatctcaaaaacgttaaatttcttcat 277  Q
              |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28668419 ----------caattcatcaaaaagtaatgtatgcctcgtaatttttgttttcttacaattagttaatatttttatctcaaaaatgttaaatttcttcat 28668508  T
Q  278 ctctgtcatttaacatgtaatcttcacctccta 310  Q
    |||| |||||||| |||||||||||||||||||    
T  28668509 ctctatcatttaatatgtaatcttcacctccta 28668541  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 46080972 - 46081052
Alignment:
Q  226 ttttcttacaattagttaatatttttatctcaaaaacgttaaatttcttcatctctgtcatttaacatgtaatcttcacct 306  Q
    |||||||||||| | |||  ||||| ||||||| ||| ||||| |||||||||||  ||| | |||||||||||| |||||    
T  46080972 ttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctccacct 46081052  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 973112 - 973189
Alignment:
Q  226 ttttcttacaattagttaatatttttatctcaaaaacgttaaatttcttcatctctgtcatttaacatgtaatcttca 303  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||  | ||| ||||||| |||||||    
T  973112 ttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttca 973189  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 7982329 - 7982259
Alignment:
Q  226 ttttcttacaattagttaatatttttatctcaaaaac-gttaaatttcttcatctctgtcatttaacatgt 295  Q
    |||||| |||||||||||  |||||||||||||||||  |||| ||||||||||||  ||||| |||||||    
T  7982329 ttttctcacaattagttatcatttttatctcaaaaacatttaagtttcttcatctccttcattcaacatgt 7982259  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 972925 - 972962
Alignment:
Q  266 aaatttcttcatctctgtcatttaacatgtaatcttca 303  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  972925 aaatttcttcatctctttcatttaacatgttatcttca 972962  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 22050853 - 22050930
Alignment:
Q  226 ttttcttacaattagttaatatttttatctcaaaaacgttaaatttcttcatctctgtcatttaacatgtaatcttca 303  Q
    ||||||||||||||||||  |||||||||| ||||||  ||| ||||||||||||  ||||| ||||||| |||||||    
T  22050853 ttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttca 22050930  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 25062330 - 25062460
Alignment:
Q  68 atcaaatatcatttctatctacagaacataaaacattttcatctgttttgttcaacatgtgattttcacctattttgtttcataatcggatcttacttgt 167  Q
    ||||||||  |||| ||||| |||||||| |||| | |||||||| ||  || |||||||||| |||| ||  |||||| |||||||  ||| |||||||    
T  25062330 atcaaatactatttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgt 25062429  T
Q  168 cattgggggtaaataactcccaattcatcaa 198  Q
     ||| ||||||||| || | |||||||||||    
T  25062430 tattaggggtaaattaccctcaattcatcaa 25062460  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 31171487 - 31171396
Alignment:
Q  107 catctgttttgttcaacatgtgattttcacctattttgtttcataatcggatcttacttgtcattgggggtaaataactcccaattcatcaa 198  Q
    |||||||||  ||||| ||||||||| || || ||| |||||||||||| ||| ||||||| |||   ||||||| || |||||||||||||    
T  31171487 catctgtttcattcaaaatgtgatttccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaa 31171396  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 34891534 - 34891608
Alignment:
Q  226 ttttcttacaattagttaatatttttatctcaaaaacgttaaatttcttcatctctgtcatttaacatgtaatct 300  Q
    ||||||||| ||||||||  ||||| ||||||| ||| | |||||||||||||||  ||||| ||||||| ||||    
T  34891534 ttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatct 34891608  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 16971858 - 16971822
Alignment:
Q  226 ttttcttacaattagttaatatttttatctcaaaaac 262  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  16971858 ttttcttacaattagttattatttttatatcaaaaac 16971822  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 20519350 - 20519287
Alignment:
Q  246 atttttatctcaaaaacgttaaatttcttcatctctgtcatttaacatgtaatcttcacctcct 309  Q
    ||||| ||||||| ||||| |||||||||||||||| ||||| ||||||| |||| || |||||    
T  20519350 attttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcct 20519287  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 42091861 - 42091796
Alignment:
Q  230 cttacaattagttaatatttttatctcaaaaacgttaaatttcttcatctctgtcatttaacatgt 295  Q
    |||||||||| |||  ||||| ||||||||||| | ||| || ||||||||| |||||||||||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgt 42091796  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 46303375 - 46303443
Alignment:
Q  62 cttactatcaaatatcatttctatctacagaacataaaacattttcatctgttttgttcaacatgtgat 130  Q
    ||||| |||||||||||||| |||||| ||| ||| |||| | |||||||  ||| |||||||||||||    
T  46303375 cttacaatcaaatatcatttttatctatagagcatcaaacttcttcatcttctttattcaacatgtgat 46303443  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 6803913 - 6803875
Alignment:
Q  161 tacttgtcattgggggtaaataactcccaattcatcaaa 199  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  6803913 tacttgtcattaggggtaaattactcccaattcatcaaa 6803875  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 32166812 - 32166734
Alignment:
Q  121 aacatgtgattttcacctattttgtttcataatcggatcttacttgtcattgggggtaaataactcccaattcatcaaa 199  Q
    |||||||||||| || || ||| ||| || ||||| ||| ||||||||||| | ||||||| || ||||||||||||||    
T  32166812 aacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaa 32166734  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 9050326 - 9050229
Alignment:
Q  101 cattttcatctgttttgttcaacatgtgattttcacctattttgtttcataatcggatcttacttgtcattgggggtaaataactcccaattcatcaa 198  Q
    ||||||||||| |||  || ||||| |||||| || ||  ||||||||||||||| ||| |||| |||||| | ||||||| || | |||||||||||    
T  9050326 cattttcatctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaa 9050229  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 37000 - 36900
Alignment:
Q  105 ttcatctgttttgttcaacatgtgattttcacctattttgtttcataatcggatcttacttgtcattgggggtaaataactcccaattcatcaaaaagta 204  Q
    |||||||  ||| ||||||||||||| |||| ||  ||||||||||||||| ||| ||||| | |||  | |||||| ||  ||||||||||||| ||||    
T  37000 ttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctacttattattatgtgtaaattacctccaattcatcaaagagta 36901  T
Q  205 a 205  Q
    |    
T  36900 a 36900  T

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