View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9549_low_21 (Length: 322)

Name: NF9549_low_21
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9549_low_21
NF9549_low_21
[»] chr4 (1 HSPs)
chr4 (31-321)||(43983859-43984149)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 31 - 321
Target Start/End: Original strand, 43983859 - 43984149
Alignment:
Q  31 tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattaatccaagtaataagagatttgagct 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  43983859 tacaatccttcaattgatccaaaataaaatgacttttattaaacataaacaatgccaaatacaaaagtataattgatccaagtaataagagatttaagct 43983958  T
Q  131 ccttaaacctaaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgct 230  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43983959 ccttaaacataaggttcagagtttaattattgactctcacatatttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgct 43984058  T
Q  231 aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctctgcttctccac 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43984059 aaaccaaaaaagatgtagcaaaatcagacacggcatcttatgcagatatcactcaattctcttggactcctactcttctcttctcctccac 43984149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University