View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_low_24 (Length: 290)
Name: NF9549_low_24
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 15114834 - 15115095
Alignment:
| Q |
14 |
agaaaatatagtaaaccaacattatcaaagtgcatattccaaatcttataaaagcttcatattccaaagatcccataagaaaaatatttgttgcaattga |
113 |
Q |
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| T |
15114834 |
agaaaacatagtaaaccaacattatcaaagtgcatattccaaatcttataaaagcttcatattccaaagatcccataagaaaaatatttgttgcaattga |
15114933 |
T |
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| Q |
114 |
caaagatggcaaccatggaacaagtggaactccccaaaaccttggcttcctttgctgagtcaaaaaatatgacatcccaagagttgnnnnnnnccaaaca |
213 |
Q |
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| T |
15114934 |
caaagatggtaaccatggaacaagtggaactccccaaaaccttggcttcctttgctgagtcaaaaaatatgacatcccaagagttgaaaaaaaccaaaca |
15115033 |
T |
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| Q |
214 |
ggaacagtaacagtgtatccaatccaaccattaggcttcaatccccaataagctgaaattcc |
275 |
Q |
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| T |
15115034 |
ggaacagtaacagtgtatccaatccaaccattaggcttcaatccccaataagctgaaattcc |
15115095 |
T |
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