View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_low_30 (Length: 252)
Name: NF9549_low_30
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_low_30 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 9194790 - 9195033
Alignment:
| Q |
9 |
gaagcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacatttcaaagatggataaagcttctttgttat |
108 |
Q |
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| T |
9194790 |
gaagcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttat |
9194889 |
T |
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| Q |
109 |
cagatgcagtggattacatcaatgagttaaaagcaaagattgaagatttaaaatttgggcaacaaaaggaatcgaaaaaggtgaacatggtaacgataga |
208 |
Q |
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| T |
9194890 |
ctgatgcagtagattacatcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaaggaatcgaaaaaggcgatgatgaaaacgatgaa |
9194989 |
T |
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| Q |
209 |
aattgtcgataataacagtgcaacgacaacttcaactgtggtag |
252 |
Q |
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| T |
9194990 |
aattgtcgataataatagtgcaacgacaacttcaattgtggtag |
9195033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 9213240 - 9212997
Alignment:
| Q |
9 |
gaagcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacatttcaaagatggataaagcttctttgttat |
108 |
Q |
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| T |
9213240 |
gaagcagagagacaaaggagagagaaactaaaccatagattttacgctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttat |
9213141 |
T |
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| Q |
109 |
cagatgcagtggattacatcaatgagttaaaagcaaagattgaagatttaaaatttgggcaacaaaaggaatcgaaaaaggtgaacatggtaacgataga |
208 |
Q |
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| T |
9213140 |
cagatgcagtggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatgga |
9213041 |
T |
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| Q |
209 |
aattgtcgataataacagtgcaacgacaacttcaactgtggtag |
252 |
Q |
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| T |
9213040 |
aattgtcgataataacagtgcaacgacaacttcaactgtggtag |
9212997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 28081128 - 28081217
Alignment:
| Q |
8 |
agaagcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacatttcaaagatggataaagc |
97 |
Q |
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| T |
28081128 |
agaagcagagagacaaagaagagaaaagcttaaccaaaaattctatgctctacgtgctgtggttccaaatgtttctaagatggacaaagc |
28081217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 17370995 - 17371053
Alignment:
| Q |
118 |
tggattacatcaatgagttaaaagcaaagattgaagatttaaaatttgggcaacaaaag |
176 |
Q |
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| T |
17370995 |
tggattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaag |
17371053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 24748745 - 24748802
Alignment:
| Q |
119 |
ggattacatcaatgagttaaaagcaaagattgaagatttaaaatttgggcaacaaaag |
176 |
Q |
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| T |
24748745 |
ggattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
24748802 |
T |
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