View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_low_31 (Length: 246)
Name: NF9549_low_31
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 49572366 - 49572526
Alignment:
| Q |
6 |
aattaatgaagttttgatatttgaagaagatgtcatagtccatgccaacaacgcccgaaatttactcctactaccattgaaagaggaaatggatgagacg |
105 |
Q |
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| T |
49572366 |
aattaatgaagttttgatatttgaaga---tgtcatagtccatgccaacaacgcccgaaatttactcctactaccattgaaagaggaaatggatgagacg |
49572462 |
T |
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| Q |
106 |
catatat----gact--gattaaaatcttcatcaagcaaggcgtaacagaaattgtcatattct |
163 |
Q |
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| T |
49572463 |
catatatatatgactatgattaaaatcttcatcaagcaaggcgtaacaaaaattgtcatattct |
49572526 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 49578527 - 49578609
Alignment:
| Q |
149 |
aaattgtcatattctaccaaactaatta-tgactcacaataatagatatccggtc--aaaaatctcacaacaataatacatct |
228 |
Q |
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| T |
49578527 |
aaattgtcatattctaccaaactaattaatgactcacaataatagatatccggtcaaaaaaatctcacaacaataatacatct |
49578609 |
T |
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