View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9549_low_35 (Length: 238)

Name: NF9549_low_35
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9549_low_35
NF9549_low_35
[»] chr8 (4 HSPs)
chr8 (60-238)||(1230689-1230866)
chr8 (17-63)||(1230885-1230931)
chr8 (210-238)||(15079180-15079208)
chr8 (210-238)||(26799189-26799217)
[»] scaffold0011 (1 HSPs)
scaffold0011 (196-238)||(7713-7755)
[»] chr3 (7 HSPs)
chr3 (193-238)||(7738657-7738702)
chr3 (207-238)||(24145400-24145431)
chr3 (205-238)||(9251425-9251458)
chr3 (210-238)||(1545221-1545249)
chr3 (210-238)||(7464519-7464547)
chr3 (210-238)||(10922336-10922364)
chr3 (194-238)||(49787691-49787735)
[»] chr2 (5 HSPs)
chr2 (189-238)||(45032677-45032726)
chr2 (198-238)||(28644518-28644558)
chr2 (210-238)||(13922660-13922688)
chr2 (210-238)||(29809331-29809359)
chr2 (210-238)||(31815915-31815943)
[»] chr4 (4 HSPs)
chr4 (198-238)||(21318281-21318321)
chr4 (196-238)||(8494978-8495020)
chr4 (196-233)||(9064475-9064512)
chr4 (210-238)||(14197459-14197487)
[»] chr5 (4 HSPs)
chr5 (199-238)||(11720888-11720927)
chr5 (195-238)||(40056618-40056661)
chr5 (197-238)||(38495134-38495175)
chr5 (210-238)||(33654753-33654781)
[»] chr1 (4 HSPs)
chr1 (199-238)||(33153908-33153947)
chr1 (210-238)||(2889954-2889982)
chr1 (210-238)||(30678841-30678869)
chr1 (210-238)||(34083668-34083696)
[»] chr7 (3 HSPs)
chr7 (209-238)||(28800055-28800084)
chr7 (210-238)||(40187664-40187692)
chr7 (210-238)||(44454517-44454545)
[»] scaffold1120 (1 HSPs)
scaffold1120 (198-238)||(1906-1946)
[»] scaffold0021 (1 HSPs)
scaffold0021 (198-238)||(161134-161174)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 1230866 - 1230689
Alignment:
Q  60 aaggtgaactactgcaccgggcttcaaatttcgagggtcaaaatatcactaaaaacattaaatagaaatgtttaagagttcaaattttcataannnnnnn 159  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  1230866 aaggtgaactactgcaccgggcttcaaattttgagggtcataatatcactaaaaacattaaatagaaatgtttaagagttcaaattttcataattttttt 1230767  T
Q  160 gcctnnnnnnngtccaaatttaaataatatttaaaatttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||       ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||    
T  1230766 gcct-aaaaaagtccaaatttaaataatatttaaaatttgtcctcgcgagtttaactcagttggtaggaacaatgcata 1230689  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 1230931 - 1230885
Alignment:
Q  17 catttgggacatccatgaccattcaattaaggtaaaaaagatcaagg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1230931 catttgggacatccatgaccattcaattaaggtaaaaaagatcaagg 1230885  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 15079208 - 15079180
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  15079208 cttaactcagttggtagggacaatgcata 15079180  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 26799189 - 26799217
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  26799189 cttaactcagttggtagggacaatgcata 26799217  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 7713 - 7755
Alignment:
Q  196 tttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  7713 tttgtccttgcgagcttaactcagttggtatggacaatgcata 7755  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 7738657 - 7738702
Alignment:
Q  193 aaatttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||||||| | || |||||||||||||||||||||||||||||    
T  7738657 aaatttgtcctcgtgagcttaactcagttggtagggacaatgcata 7738702  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 238
Target Start/End: Original strand, 24145400 - 24145431
Alignment:
Q  207 gaacttaactcagttggtagggacaatgcata 238  Q
    ||||||||||||||||||||||||||||||||    
T  24145400 gaacttaactcagttggtagggacaatgcata 24145431  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 9251458 - 9251425
Alignment:
Q  205 gcgaacttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||| |||||||||||||||||||    
T  9251458 gcgaacttaactcaattggtagggacaatgcata 9251425  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 1545249 - 1545221
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  1545249 cttaactcagttggtagggacaatgcata 1545221  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 7464547 - 7464519
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  7464547 cttaactcagttggtagggacaatgcata 7464519  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 10922364 - 10922336
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  10922364 cttaactcagttggtagggacaatgcata 10922336  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 49787735 - 49787691
Alignment:
Q  194 aatttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    |||||||||| | || |||||||||||| ||||||||||||||||    
T  49787735 aatttgtcctcgtgagcttaactcagttagtagggacaatgcata 49787691  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 45032677 - 45032726
Alignment:
Q  189 tttaaaatttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||||||||||| | || |||| ||||||||||||||||||||||||    
T  45032677 tttaaaatttgtcctcgtgagcttacctcagttggtagggacaatgcata 45032726  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 28644518 - 28644558
Alignment:
Q  198 tgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  28644518 tgtccttgtgagcttaactcagttggtagggacaatgcata 28644558  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 13922688 - 13922660
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  13922688 cttaactcagttggtagggacaatgcata 13922660  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 29809331 - 29809359
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  29809331 cttaactcagttggtagggacaatgcata 29809359  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 31815943 - 31815915
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  31815943 cttaactcagttggtagggacaatgcata 31815915  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 21318321 - 21318281
Alignment:
Q  198 tgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  21318321 tgtcctcgcgagcttaactcagttggtagggacaatgcata 21318281  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 8494978 - 8495020
Alignment:
Q  196 tttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    |||||||| | ||||||| ||||||||||||||||||||||||    
T  8494978 tttgtcctcgtgaacttagctcagttggtagggacaatgcata 8495020  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 9064475 - 9064512
Alignment:
Q  196 tttgtccttgcgaacttaactcagttggtagggacaat 233  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  9064475 tttgtccttgcgagcttaactcagttggtaaggacaat 9064512  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 14197487 - 14197459
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  14197487 cttaactcagttggtagggacaatgcata 14197459  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 11720888 - 11720927
Alignment:
Q  199 gtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  11720888 gtccttgtgagcttaactcagttggtagggacaatgcata 11720927  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 40056661 - 40056618
Alignment:
Q  195 atttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||||||| || |||||||||||||||| ||||||||||||    
T  40056661 atttgtccttgtgagcttaactcagttggtaaggacaatgcata 40056618  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 38495134 - 38495175
Alignment:
Q  197 ttgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||    
T  38495134 ttgtccttgtgaacttaactcagttggtatggataatgcata 38495175  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 33654753 - 33654781
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  33654753 cttaactcagttggtagggacaatgcata 33654781  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 33153947 - 33153908
Alignment:
Q  199 gtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  33153947 gtccttgtgagcttaactcagttggtagggacaatgcata 33153908  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 2889982 - 2889954
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  2889982 cttaactcagttggtagggacaatgcata 2889954  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 30678869 - 30678841
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  30678869 cttaactcagttggtagggacaatgcata 30678841  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 34083696 - 34083668
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  34083696 cttaactcagttggtagggacaatgcata 34083668  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 28800084 - 28800055
Alignment:
Q  209 acttaactcagttggtagggacaatgcata 238  Q
    ||||||||||||||||||||||||||||||    
T  28800084 acttaactcagttggtagggacaatgcata 28800055  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 40187692 - 40187664
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  40187692 cttaactcagttggtagggacaatgcata 40187664  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 44454517 - 44454545
Alignment:
Q  210 cttaactcagttggtagggacaatgcata 238  Q
    |||||||||||||||||||||||||||||    
T  44454517 cttaactcagttggtagggacaatgcata 44454545  T

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Target: scaffold1120 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 1906 - 1946
Alignment:
Q  198 tgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    ||||||||||| |||||||| ||||||||| ||||||||||    
T  1906 tgtccttgcgagcttaactccgttggtaggaacaatgcata 1946  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 161134 - 161174
Alignment:
Q  198 tgtccttgcgaacttaactcagttggtagggacaatgcata 238  Q
    |||||||| || |||||||||||||||| ||||||||||||    
T  161134 tgtccttgtgagcttaactcagttggtatggacaatgcata 161174  T

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