View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_low_5 (Length: 625)
Name: NF9549_low_5
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 20170940 - 20171533
Alignment:
| Q |
18 |
tatatgagaccgaggagtaattaaaagtgacagcaactgagagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20170940 |
tatatgagaccgaggagtaattaaaagtgacagcaactgagagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcat |
20171039 |
T |
|
| Q |
118 |
aagcattctagacacaacagagttgcacgtgtcctgcttctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171040 |
aagcattctagacacaacagagttgcacgtgtcctgcttctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaa |
20171139 |
T |
|
| Q |
218 |
gtggaagtttaacttgaactgggaaaaatgtgctctatacatcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20171140 |
gtggaagtttaacttgaactgggaaaaatgtgctctatacatcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtg |
20171239 |
T |
|
| Q |
317 |
cagttaaagttttggtctcnnnnnnnggaacactcaaccagaccatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntca |
416 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
20171240 |
tagttaaagttttggtctcaaaaaaaggaacactcagccagaccatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatca |
20171339 |
T |
|
| Q |
417 |
aagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactg |
516 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171340 |
aagttgcaatgtctaaggaacccaaaacgaatcatatatgtttg--tgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactg |
20171437 |
T |
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| Q |
517 |
taacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaatgatgt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20171438 |
taacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatgt |
20171533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 44392650 - 44393243
Alignment:
| Q |
18 |
tatatgagaccgaggagtaattaaaagtgacagcaactgagagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcat |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44392650 |
tatatgagaccgaggagtaattaaaagtgacagcaactgagagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcat |
44392749 |
T |
|
| Q |
118 |
aagcattctagacacaacagagttgcacgtgtcctgcttctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392750 |
aagcattctagacacaacagagttgcacgtgtcctgcttctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaa |
44392849 |
T |
|
| Q |
218 |
gtggaagtttaacttgaactgggaaaaatgtgctctatacatcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtg |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44392850 |
gtggaagtttaacttgaactgggaaaaatgtgctctatacatcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtg |
44392949 |
T |
|
| Q |
317 |
cagttaaagttttggtctcnnnnnnnggaacactcaaccagaccatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntca |
416 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
44392950 |
tagttaaagttttggtctcaaaaaaaggaacactcagccagaccatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatca |
44393049 |
T |
|
| Q |
417 |
aagttgcaatgtataaggaacccaaaacgaatcatatatgtttgtctgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactg |
516 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393050 |
aagttgcaatgtctaaggaacccaaaacgaatcatatatgtttg--tgctttaaggcaacaattacaaactctttgttgatttgaggttcacttacactg |
44393147 |
T |
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| Q |
517 |
taacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaatgatgt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44393148 |
taacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattgagaatatttgggtcccacgtgcttacgggctagctctaataatgt |
44393243 |
T |
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