View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_low_6 (Length: 499)
Name: NF9549_low_6
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_low_6 |
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| [»] scaffold0481 (1 HSPs) |
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Alignment Details
Target: scaffold0481 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 8857 - 8384
Alignment:
| Q |
18 |
aaaatctagcagttacaaatcccaaatataaaatggaaatccagacaattcaaaatataacattaaactctgccatggttcttgactgctactgccattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8857 |
aaaatctagcagttacaaatcccaaatataaaatggaaatccagacaattcaaaatataacattaaactctgccatggttcttgactgctactgccattg |
8758 |
T |
|
| Q |
118 |
taaccataagtccataactcaccaactcctacaaaaataagatagaaatcaatagagggacacgagaaaatacttccataaataataacacggcctaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8757 |
taaccataagtccataactcaccaactcctacaaaaataagatagaaatcaatagagggacacgagaaaatacttccataaataataacacggcctaagt |
8658 |
T |
|
| Q |
218 |
tttagtgcatagttacatacttatatcaagagaacttgtaaattttaaccaaaaaataaaattcaactaaaaacaacgtcacgtaattgtaaaggtggcg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8657 |
tttagtgcatagttacatacttatatcaagagaacttgtaaattttaaccaaaaaataaaattcaactaaaaacaacgtcacgtaattgtaaaggtggcg |
8558 |
T |
|
| Q |
318 |
tttaacatgcaaaagtcaatctttttatgtatgatgaagnnnnnnnnntacttgttgttgatgaaagagatactcaagnnnnnnntgctaatgtgcacga |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8557 |
tttaacatgcaaaagtcaatctttttatgtatgatgaagaaaaaaaaatacttgttgttgatgaaagagatactcaagaaaaaaatgctaatgtgcacga |
8458 |
T |
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| Q |
418 |
cacattttgtcgtgtaaatctcacgaactattcattctctctgatatgcggcagccgctctcttcaacaccaaa |
491 |
Q |
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| T |
8457 |
cacattttgtcgtgtaaatcccacgaactattcattctctctgatatgcggcagccgctctcttcaacaccaaa |
8384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 491
Target Start/End: Original strand, 12992565 - 12992653
Alignment:
| Q |
403 |
tgctaatgtgcacgacacattttgtcgtgtaaatctcacgaactattcattctctctgatatgcggcagccgctctcttcaacaccaaa |
491 |
Q |
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| T |
12992565 |
tgctaatgtgcacgacacattttgtcgtgcaaatcccacgaactattcattctctcttatatgcggcagccgctctcttcaacaccaaa |
12992653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 403 - 491
Target Start/End: Original strand, 13067215 - 13067303
Alignment:
| Q |
403 |
tgctaatgtgcacgacacattttgtcgtgtaaatctcacgaactattcattctctctgatatgcggcagccgctctcttcaacaccaaa |
491 |
Q |
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|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13067215 |
tgctaaagtgcacgacacattttgtcgtgcaaatcccacgaactattcattctctcttatatgcggcagccgctctcttcaacaccaaa |
13067303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 403 - 491
Target Start/End: Original strand, 31671918 - 31672006
Alignment:
| Q |
403 |
tgctaatgtgcacgacacattttgtcgtgtaaatctcacgaactattcattctctctgatatgcggcagccgctctcttcaacaccaaa |
491 |
Q |
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||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31671918 |
tgctaatgtgcacgacaaattttgtcgtgcaaatcccacgaactattcattctctcttatatgcggcagccgctctcttcaacaccaaa |
31672006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 15342687 - 15342738
Alignment:
| Q |
259 |
attttaaccaaaaaataaaattcaactaaaaacaacgtcacgtaattgtaaa |
310 |
Q |
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|||||| | ||||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
15342687 |
attttaccaaaaaaataagattcaattaaaaacaacgtcacataattgtaaa |
15342738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 15431752 - 15431803
Alignment:
| Q |
259 |
attttaaccaaaaaataaaattcaactaaaaacaacgtcacgtaattgtaaa |
310 |
Q |
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|||||| | ||||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
15431752 |
attttaccaaaaaaataagattcaattaaaaacaacgtcacataattgtaaa |
15431803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 15523056 - 15523107
Alignment:
| Q |
259 |
attttaaccaaaaaataaaattcaactaaaaacaacgtcacgtaattgtaaa |
310 |
Q |
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| T |
15523056 |
attttaccaaaaaaataagattcaattaaaaacaacgtcacataattgtaaa |
15523107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 403 - 491
Target Start/End: Complemental strand, 36092415 - 36092327
Alignment:
| Q |
403 |
tgctaatgtgcacgacacattttgtcgtgtaaatctcacgaactattcattctctctgatatgcggcagccgctctcttcaacaccaaa |
491 |
Q |
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||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
36092415 |
tgctaatgtgcacgacacattttgttgtgcaaatcccacgaactattcattctctcttatatgcggcaaccgctctcttcaacaccaaa |
36092327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 12226291 - 12226328
Alignment:
| Q |
313 |
tggcgtttaacatgcaaaagtcaatctttttatgtatg |
350 |
Q |
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||||||||| ||||||||||||||||||||| |||||| |
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| T |
12226291 |
tggcgtttagcatgcaaaagtcaatctttttgtgtatg |
12226328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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