View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9549_low_9 (Length: 403)
Name: NF9549_low_9
Description: NF9549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9549_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 46631581 - 46631968
Alignment:
| Q |
1 |
cagatgtatgcaggctctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatctaaatcacagaaatgct |
100 |
Q |
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| T |
46631581 |
cagatgtatgcaagatctggtcacagcacaagctagagctcgtgctcaaaggatccgaatggtgtcagaaggaaagcctcatctaaatcacagaaatgct |
46631680 |
T |
|
| Q |
101 |
atggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttgaatttgattgttgaaa |
200 |
Q |
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| T |
46631681 |
atggaaaatgacttgttcaggcaaatatataatgttagttctcttactactactaattaataattatcttttcttaccaatttgaatttgattgttgaaa |
46631780 |
T |
|
| Q |
201 |
ttttctgaattgatgtcataaacatgattggaaattatctatatcgaattgaaaacaacattttgttcaagtgtgttttcaatttgacacataaattttg |
300 |
Q |
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| T |
46631781 |
ttttctgaattgatgtcataaacatgattggaaattatctatatcgaattgaaaacaacatttagttcaagtgtgttttcaatttgacacataaattttg |
46631880 |
T |
|
| Q |
301 |
taggtaaagaaagtaacaagtttcattttgcattagttaaaacattactctatcatgagccatggcaccacactttatattgaaagtg |
388 |
Q |
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| T |
46631881 |
taggtaaagaaagtaacaagtttcattttgcattagttaaaacattactctatcatgagccatggcaccacactttatattgaaagtg |
46631968 |
T |
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