View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9550_high_2 (Length: 256)
Name: NF9550_high_2
Description: NF9550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9550_high_2 |
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| [»] scaffold0211 (1 HSPs) |
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| [»] scaffold0084 (1 HSPs) |
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| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 21370770 - 21371001
Alignment:
| Q |
9 |
agcaaagggagagaataccacagccaaaccaggtgacaagtccgcgttctcaagacctacatgcaaaagacacgcgtcatttatagggaccaatgtgaaa |
108 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21370770 |
agcaaaaggagagaataccagagccaaaccaggtgacaagtccgcgttctcaagacctacatgcaaaagacacgcgtcatttatagggaccaatgtgaaa |
21370869 |
T |
|
| Q |
109 |
cgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcg |
208 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21370870 |
cgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaactgagctattgatgtcg |
21370969 |
T |
|
| Q |
209 |
ttgtcatcaaaagacacacattagcaaggatg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
21370970 |
ttgtcatcaaaagacacacattagcaaggatg |
21371001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 21404106 - 21404235
Alignment:
| Q |
111 |
tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt |
210 |
Q |
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|||||| ||||| ||||||||||| ||||||||||| ||||| || | |||||| ||||| || ||||||||||||||||| |||||||||||||| ||| |
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| T |
21404106 |
tcctccgttgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgtt |
21404205 |
T |
|
| Q |
211 |
gtcatcaaaagacacacattagcaaggatg |
240 |
Q |
| |
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|| |||||| |||||||||||||||||| |
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|
| T |
21404206 |
accaccaaaagccacacattagcaaggatg |
21404235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 21798598 - 21798727
Alignment:
| Q |
111 |
tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt |
210 |
Q |
| |
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|||||| ||||| ||||||||||| ||||||||||| ||||| || | |||||| ||||| || ||||||||||||||||| |||||||||||||| ||| |
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| T |
21798598 |
tcctccgttgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgtt |
21798697 |
T |
|
| Q |
211 |
gtcatcaaaagacacacattagcaaggatg |
240 |
Q |
| |
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|| |||||| |||||||||||||||||| |
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| T |
21798698 |
accaccaaaagccacacattagcaaggatg |
21798727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 26227 - 26353
Alignment:
| Q |
103 |
gtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattg |
202 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
26227 |
gtgaaacctcctccattgcctgtgatagcaggcctgatgaagtattcctcgtcgtcctcaacgggttcgccacttgtgtcgatgacaaactgggctattg |
26326 |
T |
|
| Q |
203 |
atgtcgttgtcatcaaaagacacacat |
229 |
Q |
| |
|
|| | |||| ||||||||| ||||||| |
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|
| T |
26327 |
attttgttgccatcaaaagccacacat |
26353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 17090 - 16964
Alignment:
| Q |
103 |
gtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattg |
202 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| || |
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| T |
17090 |
gtgaaacctcctccattgcctgtgatagcaggcctaatgaagtattcctcgtcgtcctcaacgggttcgccacttgtgtcgatgacaaactgggctaatg |
16991 |
T |
|
| Q |
203 |
atgtcgttgtcatcaaaagacacacat |
229 |
Q |
| |
|
|| | |||| ||||||||| ||||||| |
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|
| T |
16990 |
attttgttgccatcaaaagccacacat |
16964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 33887 - 33743
Alignment:
| Q |
96 |
gaccaatgtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattga |
195 |
Q |
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|||||| ||| ||| |||||| ||||| ||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
33887 |
gaccaaagtggaacctcctccgttgcctgtgatagcaggtctaatgaagtattcctcatcgtcctcaacaggttcgccacttgtgtcgatgacaaactga |
33788 |
T |
|
| Q |
196 |
gctattgatgtcgttgtcatcaaaagacacacattagcaaggatg |
240 |
Q |
| |
|
||||||||||| |||| ||||||||| || |||| ||| |||||| |
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|
| T |
33787 |
gctattgatgttgttgccatcaaaagccaaacatgagctaggatg |
33743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 15215 - 15348
Alignment:
| Q |
96 |
gaccaatgtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattga |
195 |
Q |
| |
|
|||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
15215 |
gaccaaagtggaacctcctccattgcctccgatagcaggcctgatgaagtattcctcatcgtcctcaacgggttcaccacttgtgtcgatgacaaattgc |
15314 |
T |
|
| Q |
196 |
gctattgatgtcgttgtcatcaaaagacacacat |
229 |
Q |
| |
|
| ||||||||| ||| ||||||||| ||||||| |
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|
| T |
15315 |
gatattgatgtttttgccatcaaaagccacacat |
15348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 4286615 - 4286486
Alignment:
| Q |
111 |
tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||| |||| |||||| || |
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|
| T |
4286615 |
tcctccattgcctgtgatagcaggcctgatgaagtattcctcatcgtcctcaacgggttcgccacttgtgtctatgacaatttgtgctactgatgttgtg |
4286516 |
T |
|
| Q |
211 |
gtcatcaaaagacacacattagcaaggatg |
240 |
Q |
| |
|
|||| || || ||||||| ||||| |||| |
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|
| T |
4286515 |
atcataaagagccacacatgagcaatgatg |
4286486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 4295086 - 4294991
Alignment:
| Q |
111 |
tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgt |
206 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||| |||| |||||| |
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|
| T |
4295086 |
tcctccattacctgtgatagcgggcctgatgaagtattcctcatcgtcctcaacgggttcgccacttgtgtctatgacaatttgtgctactgatgt |
4294991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 44442674 - 44442550
Alignment:
| Q |
111 |
tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt |
210 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||| || || ||||||||||||| ||| | ||||| ||||| || |||||||||||||| || |
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|
| T |
44442674 |
tcctccgttgcctgtgattataggcctgatgaagtattcgtcaccggcctcaactggttcaccattcgtgtctatgaccaactgagctattgatgttgtg |
44442575 |
T |
|
| Q |
211 |
gtcatcaaaagacacacattagcaa |
235 |
Q |
| |
|
|||| || | |||||||| ||||| |
|
|
| T |
44442574 |
atcatgaagacacacacatgagcaa |
44442550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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