View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9550_low_4 (Length: 256)

Name: NF9550_low_4
Description: NF9550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9550_low_4
NF9550_low_4
[»] chr8 (3 HSPs)
chr8 (9-240)||(21370770-21371001)
chr8 (111-240)||(21404106-21404235)
chr8 (111-240)||(21798598-21798727)
[»] scaffold0211 (1 HSPs)
scaffold0211 (103-229)||(26227-26353)
[»] scaffold0084 (1 HSPs)
scaffold0084 (103-229)||(16964-17090)
[»] scaffold0100 (1 HSPs)
scaffold0100 (96-240)||(33743-33887)
[»] scaffold0302 (1 HSPs)
scaffold0302 (96-229)||(15215-15348)
[»] chr3 (2 HSPs)
chr3 (111-240)||(4286486-4286615)
chr3 (111-206)||(4294991-4295086)
[»] chr7 (1 HSPs)
chr7 (111-235)||(44442550-44442674)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 21370770 - 21371001
Alignment:
Q  9 agcaaagggagagaataccacagccaaaccaggtgacaagtccgcgttctcaagacctacatgcaaaagacacgcgtcatttatagggaccaatgtgaaa 108  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21370770 agcaaaaggagagaataccagagccaaaccaggtgacaagtccgcgttctcaagacctacatgcaaaagacacgcgtcatttatagggaccaatgtgaaa 21370869  T
Q  109 cgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21370870 cgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaactgagctattgatgtcg 21370969  T
Q  209 ttgtcatcaaaagacacacattagcaaggatg 240  Q
    ||||||||||||||||||||||||||||||||    
T  21370970 ttgtcatcaaaagacacacattagcaaggatg 21371001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 21404106 - 21404235
Alignment:
Q  111 tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt 210  Q
    |||||| ||||| ||||||||||| ||||||||||| ||||| || | |||||| ||||| || ||||||||||||||||| |||||||||||||| |||    
T  21404106 tcctccgttgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgtt 21404205  T
Q  211 gtcatcaaaagacacacattagcaaggatg 240  Q
      || |||||| ||||||||||||||||||    
T  21404206 accaccaaaagccacacattagcaaggatg 21404235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 21798598 - 21798727
Alignment:
Q  111 tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt 210  Q
    |||||| ||||| ||||||||||| ||||||||||| ||||| || | |||||| ||||| || ||||||||||||||||| |||||||||||||| |||    
T  21798598 tcctccgttgccggtgatagcaggtctgatgaagtaatcctcatcattctcaacaggttcaccgcttgtgtcgatgacaaactgagctattgatgttgtt 21798697  T
Q  211 gtcatcaaaagacacacattagcaaggatg 240  Q
      || |||||| ||||||||||||||||||    
T  21798698 accaccaaaagccacacattagcaaggatg 21798727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 26227 - 26353
Alignment:
Q  103 gtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattg 202  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||    
T  26227 gtgaaacctcctccattgcctgtgatagcaggcctgatgaagtattcctcgtcgtcctcaacgggttcgccacttgtgtcgatgacaaactgggctattg 26326  T
Q  203 atgtcgttgtcatcaaaagacacacat 229  Q
    || | |||| ||||||||| |||||||    
T  26327 attttgttgccatcaaaagccacacat 26353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 17090 - 16964
Alignment:
Q  103 gtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattg 202  Q
    ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||    
T  17090 gtgaaacctcctccattgcctgtgatagcaggcctaatgaagtattcctcgtcgtcctcaacgggttcgccacttgtgtcgatgacaaactgggctaatg 16991  T
Q  203 atgtcgttgtcatcaaaagacacacat 229  Q
    || | |||| ||||||||| |||||||    
T  16990 attttgttgccatcaaaagccacacat 16964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 33887 - 33743
Alignment:
Q  96 gaccaatgtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattga 195  Q
    |||||| ||| ||| |||||| ||||| ||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||    
T  33887 gaccaaagtggaacctcctccgttgcctgtgatagcaggtctaatgaagtattcctcatcgtcctcaacaggttcgccacttgtgtcgatgacaaactga 33788  T
Q  196 gctattgatgtcgttgtcatcaaaagacacacattagcaaggatg 240  Q
    ||||||||||| |||| ||||||||| || |||| ||| ||||||    
T  33787 gctattgatgttgttgccatcaaaagccaaacatgagctaggatg 33743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 15215 - 15348
Alignment:
Q  96 gaccaatgtgaaacgtcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattga 195  Q
    |||||| ||| ||| ||||||||||||   ||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||     
T  15215 gaccaaagtggaacctcctccattgcctccgatagcaggcctgatgaagtattcctcatcgtcctcaacgggttcaccacttgtgtcgatgacaaattgc 15314  T
Q  196 gctattgatgtcgttgtcatcaaaagacacacat 229  Q
    | |||||||||  ||| ||||||||| |||||||    
T  15315 gatattgatgtttttgccatcaaaagccacacat 15348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 4286615 - 4286486
Alignment:
Q  111 tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt 210  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||| |||| |||||| ||     
T  4286615 tcctccattgcctgtgatagcaggcctgatgaagtattcctcatcgtcctcaacgggttcgccacttgtgtctatgacaatttgtgctactgatgttgtg 4286516  T
Q  211 gtcatcaaaagacacacattagcaaggatg 240  Q
     |||| || || ||||||| ||||| ||||    
T  4286515 atcataaagagccacacatgagcaatgatg 4286486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 4295086 - 4294991
Alignment:
Q  111 tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgt 206  Q
    ||||||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||| |||| ||||||    
T  4295086 tcctccattacctgtgatagcgggcctgatgaagtattcctcatcgtcctcaacgggttcgccacttgtgtctatgacaatttgtgctactgatgt 4294991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 44442674 - 44442550
Alignment:
Q  111 tcctccattgccagtgatagcaggcctgatgaagtattcctcgtcgtcctcaactggttcgccacttgtgtcgatgacaaattgagctattgatgtcgtt 210  Q
    |||||| ||||| |||||   |||||||||||||||||| ||  || ||||||||||||| ||| | ||||| ||||| || |||||||||||||| ||     
T  44442674 tcctccgttgcctgtgattataggcctgatgaagtattcgtcaccggcctcaactggttcaccattcgtgtctatgaccaactgagctattgatgttgtg 44442575  T
Q  211 gtcatcaaaagacacacattagcaa 235  Q
     |||| || | |||||||| |||||    
T  44442574 atcatgaagacacacacatgagcaa 44442550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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