View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9550_low_5 (Length: 250)
Name: NF9550_low_5
Description: NF9550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9550_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 48885156 - 48884918
Alignment:
| Q |
2 |
tatcattatcaattacatacaaggatgtaataatcatgtgtagcatgtttgtataaatgttttgccaactcgcattagaattcatgagcgagttgagtgt |
101 |
Q |
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| T |
48885156 |
tatcattatcaattacatacaaggatgtaataatcatgtgtagcatgtttgtataaatgttttgccaactcgcattagaattcatgagcgagttgagtgt |
48885057 |
T |
|
| Q |
102 |
ccaccgatttatgcttgttatgaaggttatgaagaggaggtgcgtgagcttttctctctgcaatcaaatgagtttaaatggatgctgctgattttgagct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48885056 |
ccaccgatttatgcttgttatgaaggttatgaagaggaggtgtgtgagcttttctctctgcaatcaaatgagtttaaatggatgctgctgattttgagct |
48884957 |
T |
|
| Q |
202 |
taactcaaaaatttcaaggttcttaagaagttgtctctg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
48884956 |
taactcaaaaatttcaaggttcttaagaagttgtctctg |
48884918 |
T |
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