View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_high_14 (Length: 220)
Name: NF9551_1D_high_14
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 53788240 - 53788392
Alignment:
| Q |
68 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttgg |
167 |
Q |
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| T |
53788240 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttgg |
53788339 |
T |
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| Q |
168 |
ctaagaaaacgtggtgagtaatggtacccactcactctatctttgctatgatg |
220 |
Q |
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| T |
53788340 |
ctgagaaaccgtggtgagtaatggtacccactcactctatctttgctatgatg |
53788392 |
T |
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