View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9551_1D_low_11 (Length: 316)
Name: NF9551_1D_low_11
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_11 |
 | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0649 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 616 - 311
Alignment:
| Q |
3 |
atgacaaagaaagctgatttttaatgattctggtgatatgttaaattgcagaatgtaaccatttttataatattaatgtaggcaaagtggagatcatgat |
102 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
616 |
atgacaaagaatcttgatttttaatgattctggtgatat-ttaaattgcagaatgtaaccatttttataatcttaatgtaggcaaagtagagatcatgat |
518 |
T |
|
| Q |
103 |
ttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
517 |
ttccaagttatacatatgtcaaacactggagacaagtatgttgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccat |
418 |
T |
|
| Q |
203 |
gttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccag |
302 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
417 |
gttgtcatgccatttcttgcatgaaatacaaaaattataggatagctgagtatgtgccatcaattttcaaaaaagagcaatatgctgcatgttattccag |
318 |
T |
|
| Q |
303 |
catcatt |
309 |
Q |
| |
|
||||||| |
|
|
| T |
317 |
catcatt |
311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 33 - 309
Target Start/End: Original strand, 43017617 - 43017892
Alignment:
| Q |
33 |
tggtgatatgttaaattgcagaatgtaaccatttttataatattaatgtaggcaaagtggagatcatgatttccaagttatacatatgtcaaacactgga |
132 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43017617 |
tggtgatat-ttaaattgcagaatgtaaccatcttgttaatcttaatgtaggcaaagtggagatcatgatttccaagttatacatatgtcaagcactgga |
43017715 |
T |
|
| Q |
133 |
gacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaataca |
232 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
43017716 |
gacaagtacgctatcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgctgtcatgtcatttcttgcatgaaataca |
43017815 |
T |
|
| Q |
233 |
aaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcatt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43017816 |
aaaattacaggatagctgactatgtgccatcaattttcaaaaaagagcaatatgctgcatgttattccagcatcatt |
43017892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 15810919 - 15810628
Alignment:
| Q |
17 |
tgatttttaatgattctggtgatatgttaaattgcagaatgtaaccatttttataatattaatgtaggcaaagtggagatcatgatttccaagttataca |
116 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15810919 |
tgatttttaattcatctggtgatat-ttaaattgcataatgtaaccatcttgttaatcttaatgtaggcaaagtggagatcatgatttccaagttatata |
15810821 |
T |
|
| Q |
117 |
tatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatt |
216 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15810820 |
tatgtcaagcactggagacaagtatgatgtcaacttgttggacaaagtgtgtgattgtaggaaatggttgttgacaggactaccattttgtcatgccatt |
15810721 |
T |
|
| Q |
217 |
tcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcatt |
309 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15810720 |
tcttgcatgaaacacaaaaattataggatagctgactatgtgccatcaattttaaaaaaagagcaatatgctgcatgttattccagcatcatt |
15810628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 75 - 309
Target Start/End: Original strand, 27655592 - 27655826
Alignment:
| Q |
75 |
ttaatgtaggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgc |
174 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| |||| |||||||||| | ||||||||||||| |||||| ||||||||| ||||| | ||||||||| |
|
|
| T |
27655592 |
ttaatgtaggcaaggtggagatgatgatttccaggttacacatatgtcacagactggagacaagtttgctgtaaacttgttgaacaaaatttgtgattgc |
27655691 |
T |
|
| Q |
175 |
aggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaa |
274 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||| | |||||||| || |||||||||| ||||||||| ||||||||||||| ||||| | |
|
|
| T |
27655692 |
aggaaatggttgttgacaggactgccatgctgtcatgccattgcttgcatgaagtataaaaattacaagatagctgattatgtgccatcaatattcaaga |
27655791 |
T |
|
| Q |
275 |
aagagcaatatgctgcatgttattccagcatcatt |
309 |
Q |
| |
|
||||||||||||| | |||||| ||||||| |||| |
|
|
| T |
27655792 |
aagagcaatatgcagaatgttactccagcaacatt |
27655826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 75 - 309
Target Start/End: Complemental strand, 21543256 - 21543022
Alignment:
| Q |
75 |
ttaatgtaggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgc |
174 |
Q |
| |
|
||||||||||||| |||||||| ||||||| || |||| |||||||||| | ||| ||||||||| |||||| || ||| || ||||||| ||||||||| |
|
|
| T |
21543256 |
ttaatgtaggcaaggtggagataatgattttcaggttacacatatgtcacatactagagacaagtttgctgtaaatttgatgaacaaagtttgtgattgc |
21543157 |
T |
|
| Q |
175 |
aggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaa |
274 |
Q |
| |
|
|| |||||||||||||||||||| ||||| |||||||||||| | |||||||| ||||||||||||| |||| ||||||||||||||||| ||||| | |
|
|
| T |
21543156 |
agaaaatggttgttgacaggactgccatgatgtcatgccattgcttgcatgaagtacaaaaattacaatatagttgactatgtgccatcaatattcaaga |
21543057 |
T |
|
| Q |
275 |
aagagcaatatgctgcatgttattccagcatcatt |
309 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||| |
|
|
| T |
21543056 |
aagagcaatatgcagaatgttactccagcatcatt |
21543022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 25561400 - 25561339
Alignment:
| Q |
166 |
tgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaa |
227 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25561400 |
tgtgattgtaggagatggttgttgacaggtttaccatgttgtcatgccatttcctgcatgaa |
25561339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 75 - 309
Target Start/End: Complemental strand, 7563990 - 7563756
Alignment:
| Q |
75 |
ttaatgtaggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgc |
174 |
Q |
| |
|
||||||||||||| |||||||| ||||||| || |||| |||||||||| | ||||||||||||| |||||| |||||| || ||||||||||||||||| |
|
|
| T |
7563990 |
ttaatgtaggcaaggtggagataatgattttcaggttacacatatgtcacagactggagacaagtttgctgtaaacttgatgaacaaagtgtgtgattgc |
7563891 |
T |
|
| Q |
175 |
aggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaa |
274 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| |||| | |||||||| ||||||||||||| |||||||||||||||||||||| ||||| | |
|
|
| T |
7563890 |
aggaaatggttgttgacaggactgacatgatgtcatgacattgcttgcatgaagtacaaaaattacaacatagctgactatgtgccatcaatattcaaga |
7563791 |
T |
|
| Q |
275 |
aagagcaatatgctgcatgttattccagcatcatt |
309 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||| |
|
|
| T |
7563790 |
aagagcaatatgcagaatgttactccagcatcatt |
7563756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 257
Target Start/End: Original strand, 43581251 - 43581427
Alignment:
| Q |
81 |
taggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaag-tgtgtgattgcaggaa |
179 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||| | ||||| ||||||||||||||||||| |||||| | |||| | |||||||||||||||| |
|
|
| T |
43581251 |
taggcaaggtggagatcatgatttccaagtgatccatctctcaaattctggagacaagtatgctgttaacttgcag-acaatggtgtgtgattgcaggaa |
43581349 |
T |
|
| Q |
180 |
atggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgt |
257 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||||| | ||||||||| ||||| |||||| || ||||||||||| |
|
|
| T |
43581350 |
atggaatttgacaggacttccatgttgtcatcccattgcttgcatgaaacacaaatattacaacattgctgactatgt |
43581427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 262
Target Start/End: Complemental strand, 24746480 - 24746299
Alignment:
| Q |
81 |
taggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagt-gtgtgattgcaggaa |
179 |
Q |
| |
|
||||||| ||||||||||||| |||||||| || ||| | ||||| ||||||||||||||| ||| |||||| | |||| || ||||||||||||||| |
|
|
| T |
24746480 |
taggcaaggtggagatcatgaattccaagtgattcatctctcaaattctggagacaagtatgttgttaacttgcag-acaatgttgtgtgattgcaggaa |
24746382 |
T |
|
| Q |
180 |
atggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccat |
262 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||| | ||||||||| ||||| |||||| || ||||||||||| |||| |
|
|
| T |
24746381 |
atggaatttgacaggactttcatgctgtcatgccattgcttgcatgaaacacaaacattacaacattgctgactatgtaccat |
24746299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 305
Target Start/End: Original strand, 11386597 - 11386827
Alignment:
| Q |
75 |
ttaatgtaggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgc |
174 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
11386597 |
ttaatgtaggcaagctgatgataatgatttacaagttacacatatttcaaacactggagacaaatatgctgtaaacttgttggataaagtatgtgattgc |
11386696 |
T |
|
| Q |
175 |
aggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaa |
274 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||| | |||||||| ||||||| || ||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
11386697 |
aggaaatggctattgacaggacttccatgttgtcatgccattgcttgcatgaagcacaaaaactataggatagctgactatgttccaccaatattcaaaa |
11386796 |
T |
|
| Q |
275 |
aagagcaatatgctgcatgttattccagcat |
305 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
11386797 |
aagagcagtatgctgcatgttattccagcat |
11386827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 81 - 262
Target Start/End: Original strand, 26450151 - 26450332
Alignment:
| Q |
81 |
taggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaag-tgtgtgattgcaggaa |
179 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||| | ||||| ||||||||||||||||||| |||||| | |||| | |||||||||||||||| |
|
|
| T |
26450151 |
taggcaaggtggagatcatgatttccaagtgattcatctctcaaattctggagacaagtatgctgttaacttgcag-acaatgctgtgtgattgcaggaa |
26450249 |
T |
|
| Q |
180 |
atggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccat |
262 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||| | ||||||||| ||||| |||||| || ||||||||||| |||| |
|
|
| T |
26450250 |
atggaatttgacaggacttccatgctgtcatgccattgcttgcatgaaacacaaacattacaacattgctgactatgtaccat |
26450332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 19836423 - 19836484
Alignment:
| Q |
166 |
tgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaa |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19836423 |
tgtgattgtaggaaatggttgttgacaggcttaccatgttgtcatgccatttcctgcatgaa |
19836484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 21775897 - 21775857
Alignment:
| Q |
187 |
ttgacaggactaccatgttgtcatgccatttcctgcatgaa |
227 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
21775897 |
ttgacaggattgccatgttgtcatgccatctcctgcatgaa |
21775857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 305
Target Start/End: Complemental strand, 21792737 - 21792507
Alignment:
| Q |
75 |
ttaatgtaggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaagtgtgtgattgc |
174 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
21792737 |
ttaatgtaggcaagctgatgataatgattttcaagttacacatatttcaaacactggagacaaatatgctgtaaacttgttggataaagtatgtgattgc |
21792638 |
T |
|
| Q |
175 |
aggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgtgccatcaagcttcaaaa |
274 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||| | |||||||| ||||||| || ||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
21792637 |
aggaaatggctattgacaggacttccatgttgtcatgccattgcttgcatgaagcacaaaaactataggatagctgactatgttccaccaatattcaaaa |
21792538 |
T |
|
| Q |
275 |
aagagcaatatgctgcatgttattccagcat |
305 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
21792537 |
aagagcagtatgctgcatgttattccagcat |
21792507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 136 - 309
Target Start/End: Complemental strand, 32414057 - 32413884
Alignment:
| Q |
136 |
aagtatgctgtcaacttgttggacaaagtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaa |
235 |
Q |
| |
|
|||| |||||| |||||| || ||||||| |||||||||||||||||||||||||||||||| |||| ||||||| |||| | |||||||| ||||||| |
|
|
| T |
32414057 |
aagtttgctgtaaacttgatgaacaaagtttgtgattgcaggaaatggttgttgacaggactgtcatgctgtcatgacattgcttgcatgaagtacaaaa |
32413958 |
T |
|
| Q |
236 |
attacaggatagctgactatgtgccatcaagcttcaaaaaagagcaatatgctgcatgttattccagcatcatt |
309 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| |||||||||||||| | |||||| |||||||||||| |
|
|
| T |
32413957 |
attacaacatagctgactatgtgccatcaatattcaagaaagagcaatatgcagaatgttactccagcatcatt |
32413884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 21008362 - 21008186
Alignment:
| Q |
81 |
taggcaaagtggagatcatgatttccaagttatacatatgtcaaacactggagacaagtatgctgtcaacttgttggacaaag-tgtgtgattgcaggaa |
179 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||| | ||||| ||||||||||||||| ||| |||||| | |||| | |||||||||||||||| |
|
|
| T |
21008362 |
taggcaaggtggagatcatgatttccaagtgatccatctctcaaattctggagacaagtatgttgttaacttgcag-acaatggtgtgtgattgcaggaa |
21008264 |
T |
|
| Q |
180 |
atggttgttgacaggactaccatgttgtcatgccatttcctgcatgaaatacaaaaattacaggatagctgactatgt |
257 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| | ||||||||| ||||| |||||| || ||||||||||| |
|
|
| T |
21008263 |
atggaatttgacaggacttccatgttgtcatgccattgcttgcatgaaacacaaacattacaacattgctgactatgt |
21008186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 24506906 - 24506969
Alignment:
| Q |
163 |
gtgtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatga |
226 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| | || || |||||||||||||||||||||| |
|
|
| T |
24506906 |
gtgtgtgactgtaggaaatggttattgacagggttgccctgctgtcatgccatttcctgcatga |
24506969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 23332139 - 23332179
Alignment:
| Q |
187 |
ttgacaggactaccatgttgtcatgccatttcctgcatgaa |
227 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
23332139 |
ttgacaggattgccatgttgtcatgccatctcctgcatgaa |
23332179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 37101561 - 37101500
Alignment:
| Q |
166 |
tgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatgaa |
227 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37101561 |
tgtgattgtaggagatggttgttgacaggtttaccatgttgtcatgccatttcctgcatgaa |
37101500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 8511798 - 8511832
Alignment:
| Q |
275 |
aagagcaatatgctgcatgttattccagcatcatt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8511798 |
aagagcaatatgctgcatgttattccagcatcatt |
8511832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 20623756 - 20623796
Alignment:
| Q |
187 |
ttgacaggactaccatgttgtcatgccatttcctgcatgaa |
227 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
20623756 |
ttgacaggattgccatgttgtcatgccatctcctgcatgaa |
20623796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 20067786 - 20067847
Alignment:
| Q |
165 |
gtgtgattgcaggaaatggttgttgacaggactaccatgttgtcatgccatttcctgcatga |
226 |
Q |
| |
|
|||||| || ||||||||| | |||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
20067786 |
gtgtgactgtaggaaatggcttttgacaggtttgccatgctgtcatgccatttcctgcatga |
20067847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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