View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_12 (Length: 300)
Name: NF9551_1D_low_12
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 12552026 - 12552219
Alignment:
| Q |
19 |
atcaagagagggaaattcacagatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttaacttgttttttcttatg |
118 |
Q |
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| T |
12552026 |
atcaagagagggaaattcactgatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttatcttgttttttcttatg |
12552125 |
T |
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| Q |
119 |
tagaaaatgatattgaaatcactctaaagatagcgacggaatttcacagacggaaaaaataatttcgtctctaattccatcactaagtgttaga |
212 |
Q |
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| T |
12552126 |
tagaaaatgatattgaaatcactctaaagatagcgacggaatttcagagacggaaaaaataatttcgtctctaattccatcactaagtgttaga |
12552219 |
T |
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