View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9551_1D_low_18 (Length: 266)

Name: NF9551_1D_low_18
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9551_1D_low_18
NF9551_1D_low_18
[»] chr4 (37 HSPs)
chr4 (104-243)||(41452386-41452525)
chr4 (1-97)||(5648265-5648355)
chr4 (1-97)||(16911568-16911661)
chr4 (1-63)||(30352618-30352680)
chr4 (1-97)||(5306702-5306792)
chr4 (1-97)||(6430664-6430754)
chr4 (1-97)||(16408639-16408732)
chr4 (1-89)||(30639394-30639476)
chr4 (1-97)||(40915835-40915925)
chr4 (1-48)||(20225126-20225173)
chr4 (2-97)||(48598864-48598952)
chr4 (1-97)||(54730255-54730349)
chr4 (1-86)||(20639696-20639777)
chr4 (1-97)||(47443963-47444054)
chr4 (1-85)||(7909319-7909397)
chr4 (1-97)||(9832351-9832440)
chr4 (1-97)||(29207936-29208025)
chr4 (1-89)||(47528568-47528649)
chr4 (7-72)||(54175095-54175155)
chr4 (1-48)||(23501839-23501886)
chr4 (1-89)||(17043432-17043515)
chr4 (1-94)||(20224993-20225079)
chr4 (1-46)||(44363168-44363213)
chr4 (1-89)||(21646978-21647063)
chr4 (1-48)||(13256437-13256484)
chr4 (1-48)||(20908674-20908720)
chr4 (1-36)||(33836525-33836560)
chr4 (1-43)||(20405144-20405186)
chr4 (8-74)||(25343216-25343279)
chr4 (166-232)||(40299643-40299709)
chr4 (1-31)||(47482888-47482918)
chr4 (1-89)||(47441568-47441651)
chr4 (1-97)||(11054186-11054275)
chr4 (1-45)||(16494272-16494316)
chr4 (1-48)||(25629101-25629146)
chr4 (1-48)||(49796849-49796894)
chr4 (1-48)||(51865076-51865121)
[»] chr7 (27 HSPs)
chr7 (1-100)||(39123893-39123992)
chr7 (1-97)||(47716465-47716558)
chr7 (1-97)||(40463883-40463973)
chr7 (1-97)||(42805530-42805623)
chr7 (1-97)||(46354200-46354293)
chr7 (1-97)||(21172047-21172136)
chr7 (1-97)||(7879644-7879735)
chr7 (5-97)||(27629640-27629727)
chr7 (1-97)||(10693111-10693200)
chr7 (1-97)||(42391138-42391227)
chr7 (1-51)||(27889354-27889402)
chr7 (169-232)||(37140028-37140091)
chr7 (3-94)||(43557481-43557569)
chr7 (1-94)||(22699005-22699096)
chr7 (1-95)||(33871948-33872036)
chr7 (5-97)||(2541061-2541148)
chr7 (1-97)||(42798675-42798766)
chr7 (1-97)||(18512491-18512581)
chr7 (2-70)||(19265848-19265910)
chr7 (1-89)||(32758275-32758356)
chr7 (1-89)||(34626246-34626328)
chr7 (1-48)||(48735160-48735205)
chr7 (2-97)||(16341284-16341375)
chr7 (1-44)||(33500569-33500612)
chr7 (1-72)||(38604558-38604623)
chr7 (8-97)||(35203445-35203531)
chr7 (1-50)||(45018961-45019012)
[»] chr2 (20 HSPs)
chr2 (1-97)||(10543704-10543797)
chr2 (1-97)||(24200661-24200754)
chr2 (1-97)||(12023957-12024047)
chr2 (1-97)||(8455354-8455445)
chr2 (1-97)||(14444735-14444825)
chr2 (1-97)||(14530324-14530417)
chr2 (1-97)||(22371063-22371151)
chr2 (2-87)||(36871509-36871588)
chr2 (1-97)||(5841034-5841127)
chr2 (1-97)||(9671187-9671276)
chr2 (1-97)||(25249776-25249866)
chr2 (1-48)||(10546215-10546260)
chr2 (1-97)||(21779299-21779388)
chr2 (3-94)||(7214543-7214631)
chr2 (1-36)||(23488545-23488580)
chr2 (1-48)||(44449421-44449467)
chr2 (169-230)||(25902258-25902319)
chr2 (25-89)||(29419945-29420010)
chr2 (6-97)||(17623570-17623656)
chr2 (1-89)||(17896273-17896357)
[»] chr8 (26 HSPs)
chr8 (1-97)||(13160708-13160798)
chr8 (2-97)||(45071271-45071360)
chr8 (1-94)||(7136565-7136655)
chr8 (2-97)||(26954138-26954231)
chr8 (1-97)||(36720802-36720893)
chr8 (1-97)||(6760828-6760921)
chr8 (1-97)||(12670288-12670377)
chr8 (1-85)||(20869941-20870022)
chr8 (1-97)||(21070735-21070831)
chr8 (1-97)||(39461032-39461125)
chr8 (1-48)||(20284107-20284154)
chr8 (1-97)||(28817664-28817755)
chr8 (7-48)||(43942376-43942417)
chr8 (1-97)||(24365097-24365189)
chr8 (1-97)||(5135327-5135418)
chr8 (1-46)||(25250576-25250621)
chr8 (1-97)||(35261685-35261776)
chr8 (1-48)||(29877146-29877191)
chr8 (1-97)||(30454135-30454224)
chr8 (1-97)||(44781542-44781635)
chr8 (1-44)||(16225075-16225118)
chr8 (26-97)||(18164821-18164888)
chr8 (52-97)||(28407422-28407467)
chr8 (1-97)||(44530155-44530246)
chr8 (1-48)||(8897802-8897847)
chr8 (1-48)||(19729392-19729437)
[»] chr5 (20 HSPs)
chr5 (139-243)||(4058595-4058699)
chr5 (1-97)||(43334208-43334302)
chr5 (1-97)||(4619142-4619235)
chr5 (1-89)||(27328766-27328851)
chr5 (1-97)||(38879587-38879680)
chr5 (1-97)||(41014325-41014415)
chr5 (1-94)||(13801805-13801895)
chr5 (1-97)||(32703430-32703519)
chr5 (1-48)||(20135656-20135703)
chr5 (1-97)||(8170022-8170111)
chr5 (2-89)||(19142982-19143063)
chr5 (1-97)||(24448896-24448987)
chr5 (1-89)||(43574620-43574703)
chr5 (4-48)||(12477161-12477204)
chr5 (1-48)||(34154852-34154897)
chr5 (1-88)||(7368413-7368493)
chr5 (1-72)||(208965-209031)
chr5 (1-71)||(2838811-2838875)
chr5 (1-34)||(25622524-25622557)
chr5 (4-97)||(35710319-35710405)
[»] chr6 (14 HSPs)
chr6 (1-97)||(29355893-29355986)
chr6 (1-97)||(12221953-12222046)
chr6 (1-89)||(9161137-9161221)
chr6 (1-97)||(1346970-1347059)
chr6 (1-89)||(1354795-1354876)
chr6 (1-97)||(2166448-2166541)
chr6 (1-97)||(2178081-2178174)
chr6 (1-43)||(12892064-12892106)
chr6 (1-44)||(12885967-12886010)
chr6 (2-36)||(3116168-3116202)
chr6 (2-48)||(7947410-7947455)
chr6 (7-48)||(2755466-2755507)
chr6 (1-85)||(6024251-6024332)
chr6 (4-48)||(24734694-24734738)
[»] chr3 (34 HSPs)
chr3 (1-97)||(10795461-10795554)
chr3 (1-97)||(13628828-13628921)
chr3 (1-97)||(46421073-46421166)
chr3 (1-97)||(13730640-13730733)
chr3 (1-97)||(29366758-29366851)
chr3 (1-48)||(45786252-45786299)
chr3 (1-95)||(22122955-22123042)
chr3 (2-96)||(22609795-22609883)
chr3 (1-97)||(8247725-8247818)
chr3 (1-48)||(353387-353434)
chr3 (2-89)||(14986993-14987077)
chr3 (2-97)||(34420682-34420773)
chr3 (1-72)||(47624095-47624160)
chr3 (1-48)||(49013511-49013558)
chr3 (3-97)||(16735469-16735557)
chr3 (1-97)||(1217118-1217207)
chr3 (2-89)||(26869743-26869824)
chr3 (1-96)||(31592878-31592966)
chr3 (1-94)||(40272850-40272938)
chr3 (2-48)||(45139515-45139561)
chr3 (1-89)||(9607239-9607324)
chr3 (1-48)||(15797294-15797339)
chr3 (1-94)||(33926114-33926202)
chr3 (1-48)||(34771402-34771447)
chr3 (1-48)||(54484765-54484810)
chr3 (2-89)||(39203552-39203632)
chr3 (1-48)||(54374383-54374429)
chr3 (2-36)||(5173758-5173792)
chr3 (2-72)||(6411861-6411925)
chr3 (26-97)||(7696948-7697014)
chr3 (34-97)||(10870021-10870080)
chr3 (1-97)||(516437-516531)
chr3 (1-97)||(26573155-26573246)
chr3 (1-48)||(52926257-52926302)
[»] chr1 (29 HSPs)
chr1 (1-97)||(30395764-30395857)
chr1 (1-97)||(11596542-11596632)
chr1 (2-94)||(27201679-27201768)
chr1 (1-48)||(19932791-19932838)
chr1 (7-97)||(32632601-32632685)
chr1 (1-89)||(18944680-18944765)
chr1 (1-97)||(35005152-35005245)
chr1 (1-97)||(35117804-35117897)
chr1 (1-97)||(35253225-35253314)
chr1 (1-48)||(18741995-18742042)
chr1 (167-232)||(23335956-23336021)
chr1 (5-97)||(10668254-10668343)
chr1 (1-97)||(20004128-20004221)
chr1 (1-97)||(34725136-34725225)
chr1 (1-97)||(38478320-38478409)
chr1 (1-48)||(42304245-42304292)
chr1 (1-36)||(50606488-50606523)
chr1 (1-97)||(46247991-46248082)
chr1 (1-48)||(4349713-4349758)
chr1 (1-85)||(31382252-31382330)
chr1 (1-88)||(41319844-41319926)
chr1 (1-97)||(47214540-47214629)
chr1 (18-94)||(22324925-22324997)
chr1 (8-94)||(17470390-17470472)
chr1 (1-97)||(18724583-18724674)
chr1 (3-48)||(31442429-31442473)
chr1 (1-97)||(46991833-46991924)
chr1 (1-48)||(12126875-12126920)
chr1 (1-48)||(19414512-19414557)
[»] scaffold0049 (1 HSPs)
scaffold0049 (7-97)||(58983-59070)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-89)||(30593-30674)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-48)||(24171-24216)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-48)||(48672-48717)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-97)||(4163-4257)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-72)||(10841-10907)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-89)||(13062-13144)
[»] scaffold0187 (2 HSPs)
scaffold0187 (1-97)||(10088-10177)
scaffold0187 (1-97)||(20416-20505)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-48)||(46883-46928)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 41452525 - 41452386
Alignment:
Q  104 gagatgaagaccatgacgtggaaaatagagagaatatcagtgatgaagaagacgctgaaactgctaggaaaaaacttagactctctaaagaccaatcagc 203  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41452525 gagaagaagatcatgacgtggaaaatagagagaatatcagtgatgaagaagacgctgaaactgctaggaaaaaacttagactctctaaagaccaatcagc 41452426  T
Q  204 tattcttgaagaaaccttcaaagaacacaatacccttaat 243  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41452425 tattcttgaagaaaccttcaaagaacacaatacccttaat 41452386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 5648355 - 5648265
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| |||||||| |||||||    
T  5648355 gggtccgggaaggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttccaggacttgaacccgtg 5648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16911661 - 16911568
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| ||| |||||||||| | |||||||||||||| |||||||    
T  16911661 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgatttgtacacaagaggctgtttctaggacttgaacccgtg 16911568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30352618 - 30352680
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgttttt 63  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| || | ||||||||||||    
T  30352618 gggtccgagaaggggtcccaccatttttggtgtattgtacgcagctttacttaccctgttttt 30352680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5306702 - 5306792
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| |||||| |||    ||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  5306702 gggtccgggaaggggtcccacca--tttggtgtattgtacgcaacct----taccctgattttacacaagaggctgtttccaggacttgaacccgtg 5306792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 6430664 - 6430754
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| | |||||| |||||||    
T  6430664 gggtccgggaagtggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttccatgacttgaacccgtg 6430754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 16408639 - 16408732
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||| |||||||| |||||||||| ||||||| ||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  16408639 gggtccgggaaggggttccaccattattggtgtattgtacgcagtct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 16408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30639476 - 30639394
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||||||||||||||| ||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| ||||||||    
T  30639476 gggtccgggaaggggtctcaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagagtctgtttccaggacttg 30639394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40915925 - 40915835
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||||| |||    |||||||||||||||| | ||||| |||||||| |||||||    
T  40915925 gggtccgggaagggctcccaccattt--ggtgtattgtacgcagccttacct----tgtttttacacaagaggctgtttccaggacttgaacccgtg 40915835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20225173 - 20225126
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  20225173 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcctt 20225126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 48598864 - 48598952
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  48598864 ggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttgaacccgtg 48598952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 54730349 - 54730255
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt-ccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||| ||| |||| |||||||||| |||||||||||  ||||   | |||||||||||||| | |||||||||||||| |||||||    
T  54730349 gggtccgggaaggggttccatcattattggtgtattatacgcagccttatccta---tttttttacacaagaggctgtttctaggacttgaacccgtg 54730255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20639696 - 20639777
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggac 86  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| |||||    
T  20639696 gggtccgggaaggggtcccacca-ttttggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggac 20639777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 47444054 - 47443963
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||| |||||| | ||||| |||||||| |||||||    
T  47444054 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgttttttacgcaagaggctgtttccaggacttgaacccgtg 47443963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7909319 - 7909397
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctagga 85  Q
    |||| |||||||||||||||||||||  |||||||| |||||| ||||    |||||||||||||||||||||| ||||| ||||    
T  7909319 gggttcgggaaggggtcccaccattt--ggtgtattgtacgcaacctt----accctgtttttacacaagagactgtttccagga 7909397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 9832351 - 9832440
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||  |||||||| |||||||    
T  9832351 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgttttcaggacttgaacccgtg 9832440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 29207936 - 29208025
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| |  |||| |||||||| |||||||    
T  29207936 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggcaatttccaggacttgaacccgtg 29208025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 47528568 - 47528649
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| ||||||||    
T  47528568 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttg 47528649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 54175155 - 54175095
Alignment:
Q  7 gggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagag 72  Q
    ||||||||||||||||||||| |||||||| |||||||||||    ||||||||||||||||||||    
T  54175155 gggaaggggtcccaccatttt-ggtgtattgtacgcagcctt----accctgtttttacacaagag 54175095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23501886 - 23501839
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  23501886 gggtccgggaaggggtcccaccattattggtgtattgtacgcaacctt 23501839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 17043432 - 17043515
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttg 89  Q
    ||||| |||||||||||||||||  ||||||||||| ||||||||||    |||||||| ||||||||||||| | ||||| ||||||||    
T  17043432 gggtctgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgtattttacacaagaggctgtttccaggacttg 17043515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 20225079 - 20224993
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggaccc 94  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| |||||||||||||   ||||| |||||||| ||||    
T  20225079 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggttgtttccaggacttgaaccc 20224993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44363168 - 44363213
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcc 46  Q
    ||||||||||||||||||||||||||||||||  || |||||||||    
T  44363168 gggtccgggaaggggtcccaccatttttggtgcgttgtacgcagcc 44363213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21647063 - 21646978
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt-ccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||| ||||||||||||||||||| ||||| |||| ||||||||||| |||||     |||||||||||||| | ||||| ||||||||    
T  21647063 gggtctgggaaggggtcccaccattattggtatattgtacgcagccttacccta----ttttttacacaagaggctgtttccaggacttg 21646978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13256437 - 13256484
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||| |||||||||||||||| ||| |||||||||| |||||||||||    
T  13256437 gggttcgggaaggggtcccactattattggtgtattgtacgcagcctt 13256484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20908674 - 20908720
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||    
T  20908674 gggttcgggaaggggtcccacca-ttttggtgtattgtacgcagcctt 20908720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33836525 - 33836560
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtatt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  33836525 gggtccgggaaggggtcccaccattattggtgtatt 33836560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20405186 - 20405144
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgca 43  Q
    ||||||||||||||||||||||||| || ||||||| ||||||    
T  20405186 gggtccgggaaggggtcccaccattattagtgtattgtacgca 20405144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 25343279 - 25343216
Alignment:
Q  8 ggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagac 74  Q
    ||||||||||| ||| ||||||||||||| ||||||||||    ||||||| ||||||||||||||||    
T  25343279 ggaaggggtccaaccctttttggtgtattgtacgcagcct----taccctgttttttacacaagagac 25343216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 40299643 - 40299709
Alignment:
Q  166 gctaggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacaca 232  Q
    |||||||| || ||||| ||| | ||||| ||||| ||||| |||||||||| ||||||||||||||    
T  40299643 gctaggaagaagcttaggctcaccaaagatcaatctgctatgcttgaagaaagcttcaaagaacaca 40299709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 47482888 - 47482918
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggt 31  Q
    |||||||||||||||||||||||||||||||    
T  47482888 gggtccgggaaggggtcccaccatttttggt 47482918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 47441568 - 47441651
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||||||||||| ||||  ||||||||||| ||| ||||||    ||||||| |||||||| ||||||| |||||| |||||||    
T  47441568 gggtccgggaaggggtccaacca--tttggtgtattgtacacagcct----taccctgatttttacaaaagagactgtttcttggacttg 47441651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 11054186 - 11054275
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||| || ||||||  |||||||| ||||||| |||    |||||||||| ||||||||||| ||||  |||||||| |||||||    
T  11054186 gggtccgggaaggggttccgccattt--ggtgtattgtacgcagtctt----accctgtttt-acacaagagactgttttcaggacttgaacccgtg 11054275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16494316 - 16494272
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagc 45  Q
    ||||| ||||| |||||||||||||||||||||||| || |||||    
T  16494316 gggtctgggaaagggtcccaccatttttggtgtattgtatgcagc 16494272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25629146 - 25629101
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| ||| |||||||    
T  25629146 gggtccgggaaggggtcccacca--tttggtgtattgtacacagcctt 25629101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 49796894 - 49796849
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||    
T  49796894 gggttcgggaaggggtcccacca--tttggtgtattgtacgcagcctt 49796849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 51865076 - 51865121
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  51865076 gggtccgggaaggggccccacca--tttggtgtattgtacgcagcctt 51865121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 39123992 - 39123893
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtgtcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39123992 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttgaacccgtgtcg 39123893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 47716558 - 47716465
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  47716558 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 47716465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40463973 - 40463883
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||| ||||||||||||||||||  |||||||| |||||||||||    |||| ||||||||||||||||| ||||||| |||||| |||||||    
T  40463973 gggtccgagaaggggtcccaccattt--ggtgtattatacgcagcctt----acccagtttttacacaagagactgtttctatgacttgaacccgtg 40463883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 42805623 - 42805530
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  42805623 gggtccgggaaggggtcccaccattattggtgtattgtacacagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 42805530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 46354293 - 46354200
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| ||||||||||||||   ||||| |||||||| |||||||    
T  46354293 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggttgtttccaggacttgaacccgtg 46354200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21172047 - 21172136
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  21172047 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttgaacccgtg 21172136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7879735 - 7879644
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    |||| || |||||||||||||||  ||||| |||||||| |||||||    
T  7879735 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccttgttttttacacaagagattgtttccaggacttgaacccgtg 7879644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 27629727 - 27629640
Alignment:
Q  5 ccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgttttt-acacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||    ||||||||||| ||||||||| | ||||| |||||||| |||||||    
T  27629727 ccgggaaggggtcccaccattt--ggtgtattttacgcaacctt----accctgttttttacacaagaggctgtttccaggacttgaacccgtg 27629640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10693111 - 10693200
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||  ||||||||||||| | ||||| |||||||| |||||||    
T  10693111 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccct-cttttacacaagaggctgtttccaggacttgaacccgtg 10693200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 42391138 - 42391227
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||  | ||||| |||||||| |||||||    
T  42391138 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaagctgtttccaggacttgaacccgtg 42391227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27889354 - 27889402
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccc 51  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  27889354 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttccc 27889402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 37140028 - 37140091
Alignment:
Q  169 aggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacaca 232  Q
    ||||| ||||| ||||||||||| || ||||||||| |||||||||| | ||||||||||||||    
T  37140028 aggaagaaactcagactctctaaggaacaatcagcttttcttgaagatagcttcaaagaacaca 37140091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 43557569 - 43557481
Alignment:
Q  3 gtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggaccc 94  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||    ||| ||| |||||||||||||| | ||||| |||||||| ||||    
T  43557569 gtccgggagggggtcccaccattattggtgtattgtacgcagcct----tactctgttttttacacaagaggctgtttccaggacttgaaccc 43557481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 22699005 - 22699096
Alignment:
Q  1 gggtccgggaag-gggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggaccc 94  Q
    |||||||||||  |||||||||||||||||||||||| ||||||| ||    ||||||| ||||||||||||||||  |||| |||||||| ||||    
T  22699005 gggtccgggaaaagggtcccaccatttttggtgtattgtacgcagtct----taccctgttttttacacaagagactatttccaggacttgaaccc 22699096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33871948 - 33872036
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccg 95  Q
    ||||| |||||||||||||||||  ||||||||||| ||||||||||    || ||||||||||||||||||   ||||| |||||||| |||||    
T  33871948 gggtctgggaaggggtcccacca--tttggtgtattgtacgcagcct----tatcctgtttttacacaagaggttgtttccaggacttgaacccg 33872036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 2541061 - 2541148
Alignment:
Q  5 ccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttt-tacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||  |||||||  |||||||||||    |||||||||| |||||||||| | ||||| |||||||| |||||||    
T  2541061 ccgggaaggggtcccaccattt--ggtgtatagtacgcagcctt----accctgttttttacacaagaggctgtttccaggacttgaacccgtg 2541148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 42798766 - 42798675
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||| |||||||||||  ||||||||||| ||||||||||    |||| || |||||||||||||||| ||||| | |||||| |||||||    
T  42798766 gggtccgggaaagggtcccacca--tttggtgtattgtacgcagcct----taccttgttttttacacaagagactgtttccaagacttgaacccgtg 42798675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 18512491 - 18512581
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  || |||||||| ||||||||||    |||||| |||||||||||||    ||||| |||||||| |||||||    
T  18512491 gggtccgggaaggggtcccacca--ttcggtgtattgtacgcagcct----taccctatttttacacaagatgttgtttccaggacttgaacccgtg 18512581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 19265910 - 19265848
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaag 70  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||    |||||| ||||||||||||    
T  19265910 ggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctctttttacacaag 19265848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32758356 - 32758275
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||||||||||||||||  ||||||||||| ||| ||||||    ||||||| ||||||||||||| | ||||| ||||||||    
T  32758356 gggtccgggaaggggtcccacca--tttggtgtattgtacacagcct----taccctg-ttttacacaagaggctgtttccaggacttg 32758275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34626246 - 34626328
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||||||| ||||||||  |||||||||||  |||||||||    ||||||||||||||||| ||| | ||||| ||||||||    
T  34626246 gggtccgggaagggatcccacca--tttggtgtattgaacgcagcct----taccctgtttttacacaggaggctgtttccaggacttg 34626328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 48735160 - 48735205
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  48735160 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 48735205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 16341375 - 16341284
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgttttt-acacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||| || ||||||||||| |||||||| |||| ||||||    ||||||||||| ||||||||| | |||||||| ||||| |||||||    
T  16341375 ggtccgggaagagggcccaccatttt-ggtgtattgtacgtagcctt----accctgttttttacacaagaggctgtttctagaacttgaacccgtg 16341284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33500612 - 33500569
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcag 44  Q
    |||||||||||||||||||||||||||| ||||||  |||||||    
T  33500612 gggtccgggaaggggtcccaccattttttgtgtatagtacgcag 33500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38604623 - 38604558
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagag 72  Q
    |||||||| |||||||| ||||||||  |||||||| |||||||||||    ||||||||||||||||||||    
T  38604623 gggtccggaaaggggtctcaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagag 38604558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 35203531 - 35203445
Alignment:
Q  8 ggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||| |||||||||||||||| |||| ||||||| ||    || |||| |||||||||||||||  ||||| |||||||| |||||||    
T  35203531 ggaagggatcccaccatttttggtatattgtacgcagtct----tatcctgttttttacacaagagaatgtttccaggacttgaacccgtg 35203445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45018961 - 45019012
Alignment:
Q  1 gggtccgggaaggggtcccacca--tttttggtgtattttacgcagccttcc 50  Q
    |||||||||||||||| ||||||  |||||||| |||| |||||||||||||    
T  45018961 gggtccgggaaggggttccaccagttttttggtatattgtacgcagccttcc 45019012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10543797 - 10543704
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    ||||||| |||||||||||||| ||||||| |||||||| |||||||    
T  10543797 gggtccgggaaggggtcccaccatttttggtgtattgtacgcagcct----taccctgttttttacacaagaggccgtttccaggacttgaacccgtg 10543704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24200661 - 24200754
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  24200661 gggtccgggaagggttcccaccatttttggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 24200754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12023957 - 12024047
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||| |||||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| |||||||| |||||||    
T  12023957 gggtccgggagggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttccaggacttgaacccgtg 12024047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8455354 - 8455445
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    |||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  8455354 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgtgttttacacaagaggctgtttccaggacttgaacccgtg 8455445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 14444825 - 14444735
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||||  |||||||  ||| |||||||    |||||||||||||||||||| | ||||| |||||||| |||||||    
T  14444825 gggtccgggaaggggtcccaccattt--ggtgtatcgtacacagcctt----accctgtttttacacaagaggctgtttccaggacttgaacccgtg 14444735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 14530417 - 14530324
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| |||| |||||    ||||||| |||||| ||||||| | ||||| |||||||| |||||||    
T  14530417 gggtccgggaaggggtcccaccattattggtgtattgtacgtagcct----taccctgttttttatacaagaggctgtttccaggacttgaacccgtg 14530324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 22371151 - 22371063
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||||||||||||  ||| | ||||| |||||||| |||||||    
T  22371151 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgtttttacac--gaggctgtttccaggacttgaacccgtg 22371063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 36871588 - 36871509
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggact 87  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||||||| ||||||||| | ||||| ||||||    
T  36871588 ggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgttttcacacaagaggctgtttccaggact 36871509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 5841127 - 5841034
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt-ccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| ||| |||||| |||||| |||| |||||     ||||||||||| || | |||||||||||||| |||||||    
T  5841127 gggtccgggaaggggtcccaccattattgatgtattgtacgcatccttacccta----ttttttacacaaaaggctgtttctaggacttgaacccgtg 5841034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9671276 - 9671187
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||| ||| |||||||    
T  9671276 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggatttgaacccgtg 9671187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 25249776 - 25249866
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||| ||||||||| |||||||||||  |||||||| |||||||||||    ||||||||| |||||||||||| ||||| | |||||| |||||||    
T  25249776 gggttcgggaagggatcccaccattt--ggtgtattgtacgcagcctt----accctgtttgtacacaagagactgtttccatgacttgaacccgtg 25249866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10546260 - 10546215
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  10546260 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 10546215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21779299 - 21779388
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| |||||| |||    ||||||| ||||||||||||| | || || |||||||| |||||||    
T  21779299 gggtccgggaaggggtcccacca--tttggtgtattgtacgcaacct----taccctg-ttttacacaagaggctgtctccaggacttgaacccgtg 21779388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 7214631 - 7214543
Alignment:
Q  3 gtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggaccc 94  Q
    ||||| |||||| || |||||||||| ||||||| ||||||||||    |||||||| ||||||||||||||| ||||| | |||||| ||||    
T  7214631 gtccgagaagggatctcaccattttttgtgtattgtacgcagcct----taccctgtattttacacaagagactgtttccaagacttgaaccc 7214543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23488580 - 23488545
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtatt 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  23488580 gggtccgggaaggggtcccaccattttttgtgtatt 23488545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44449421 - 44449467
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||    
T  44449421 gggtccgggaaggggtcccacta-ttttggtgtattgtacgcagcctt 44449467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 25902319 - 25902258
Alignment:
Q  169 aggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaaca 230  Q
    ||||| |||||||| |||||||| || ||||| ||| ||||||||||||  |||||||||||    
T  25902319 aggaagaaacttaggctctctaaggatcaatctgcttttcttgaagaaagtttcaaagaaca 25902258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 29419945 - 29420010
Alignment:
Q  25 ttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||||| ||||||||||| | ||||||| ||||||||||||||   ||||| ||||||||    
T  29419945 ttttggtgtattgtacgcagccttacttaccctgttttttacacaagaggttgtttccaggacttg 29420010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 17623656 - 17623570
Alignment:
Q  6 cgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||| |||||||||  |||||||| |||||||||||    |||||| ||||||||||||||   ||||| |||||||| |||||||    
T  17623656 cgggaaggggttccaccattt--ggtgtattgtacgcagcctt----accctgatttttacacaagaggttgtttcgaggacttgaacccgtg 17623570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 17896357 - 17896273
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt-ccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||||| |||||||||||||||  |||||| |||| ||||||||||| |||||   | ||||||||||||||   ||||||||||||||    
T  17896357 gggtccgagaaggggtcccacca--tttggtatattgtacgcagccttacccta---tttttttacacaagaggttgtttctaggacttg 17896273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13160798 - 13160708
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | |||||||||||||| |||||||    
T  13160798 gggtccgggaaggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttctaggacttgaacccgtg 13160708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 45071360 - 45071271
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| || ||||| |||||||    
T  45071360 ggtccgggaaggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttccagaacttgaacccgtg 45071271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 7136565 - 7136655
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccct-gtttttacacaagagaccgtttctaggacttggaccc 94  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    |||||| |||||||||||||||   ||||| |||||||| ||||    
T  7136565 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctggtttttacacaagaggttgtttccaggacttgaaccc 7136655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 26954231 - 26954138
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg--tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||||    |||||||  |||||||||||||| | ||||| |||||||| |||||||    
T  26954231 ggtctgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgtttttttacacaagaggctgtttccaggacttgaacccgtg 26954138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 36720893 - 36720802
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  36720893 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 36720802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6760921 - 6760828
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||| ||||||||||||||||| |||||||||| |||| |||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  6760921 gggtccgagaaggggtcccaccattattggtgtattgtacgaagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 6760828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12670288 - 12670377
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  12670288 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttgaacccgtg 12670377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20870022 - 20869941
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctagga 85  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||||| ||||| ||||    
T  20870022 gggtcctggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagagactgtttccagga 20869941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21070735 - 21070831
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||| ||     | |||||| ||||||| | ||||| |||||||| |||||||    
T  21070735 gggtccgggaaggggtcccaccattattggtgtattgtacgcagccttaccctttttttttttatacaagaggctgtttccaggacttgaacccgtg 21070831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 39461032 - 39461125
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||    ||| ||| |||||||||||||| | ||||| |||||||| |||||||    
T  39461032 gggtccgggaaggggtctcaccattattggtgtattgtacgcagcct----tactctgttttttacacaagaggctgtttccaggacttgaacccgtg 39461125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20284107 - 20284154
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  20284107 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcctt 20284154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28817664 - 28817755
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  || |||||||| ||||||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  28817664 gggtccgggaaggggtcccacca--ttgggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 28817755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 43942417 - 43942376
Alignment:
Q  7 gggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  43942417 gggaaggggtcccaccatttttggtgtattgtacgcagcctt 43942376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24365097 - 24365189
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg--tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| | ||||||||    |||||||  |||||||||||||| | ||||||||| |||| |||||||    
T  24365097 gggtccgggaaggggtcccacca--tttggtgtattgttcgcagcct----taccctgattttttacacaagaggctgtttctagggcttgaacccgtg 24365189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5135327 - 5135418
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||| ||||||| ||  | || |||||||||||||| | ||||| |||||||| |||||||    
T  5135327 gggtccgggaaggggtcccacca--tttggtgtattgtacacagccttacc--ctct-tttttacacaagaggctgtttccaggacttgaacccgtg 5135418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25250621 - 25250576
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcc 46  Q
    |||| |||||||||||||||||||| |||||||||| |||||||||    
T  25250621 gggttcgggaaggggtcccaccattattggtgtattgtacgcagcc 25250576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35261776 - 35261685
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgttttt-acacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||| |||||||||||||||||||  |||||||| |||||| ||||    ||||||||||| ||||||||||| ||||| ||| |||| |||||||    
T  35261776 gggtccaggaaggggtcccaccattt--ggtgtattgtacgcaacctt----accctgttttttacacaagagactgtttccagggcttgaacccgtg 35261685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29877191 - 29877146
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  29877191 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 29877146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30454135 - 30454224
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||  ||||||||||    |||| || ||||||||||||| | ||||| |||||||| |||||||    
T  30454135 gggtccgggaaggggtcccacca--tttggtgtatcgtacgcagcct----taccttg-ttttacacaagaggctgtttccaggacttgaacccgtg 30454224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 44781542 - 44781635
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||| |||| ||||||||| ||||||||||||||| ||| ||||||    |||||||| |||||||||||||   ||||| |||||||| |||||||    
T  44781542 gggtctgggacggggtcccaacatttttggtgtattgtacacagcct----taccctgtcttttacacaagaggttgtttccaggacttgaacccgtg 44781635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16225118 - 16225075
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcag 44  Q
    |||||||||||||| |||||||||| |||||||||| |||||||    
T  16225118 gggtccgggaagggatcccaccattattggtgtattgtacgcag 16225075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 18164821 - 18164888
Alignment:
Q  26 tttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||| |||||| ||||    |||||||||||||||||||| | ||||| |||||||| |||||||    
T  18164821 tttggtgtattgtacgcaacctt----accctgtttttacacaagaggctgtttccaggacttgaacccgtg 18164888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 28407467 - 28407422
Alignment:
Q  52 taccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||| | ||||| |||||||| |||||||    
T  28407467 taccctgtttttacacaagaggctgtttccaggacttgaacccgtg 28407422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 44530246 - 44530155
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||| ||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||||   ||||| | |||||| |||||||    
T  44530246 gggtccaggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgttttttacacaagaggttgtttccaagacttgaacccgtg 44530155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8897802 - 8897847
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||| ||||||    
T  8897802 gggtccgggaaggggtcccacca--tttggtgtattgtacgtagcctt 8897847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19729437 - 19729392
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| ||| |||||||    
T  19729437 gggtccgggaaggggtcccacca--tttggtgtattgtacacagcctt 19729392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 4058595 - 4058699
Alignment:
Q  139 atcagtgatgaagaagacgctgaaactgctaggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacacaataccc 238  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||   ||||| ||||| |  |||||||||||||| || |    
T  4058595 atcagtgatgaagaagacgctgaaacttcaaggaaaaaacttagactcaccaaagaccaatcaatcattctcgaagagagtttcaaagaacacaacactc 4058694  T
Q  239 ttaat 243  Q
    |||||    
T  4058695 ttaat 4058699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43334302 - 43334208
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg--tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    |||||||  |||||||||| ||| | ||||| |||||||| |||||||    
T  43334302 gggtccgggaaggggtcccaccatttttggtgtattgtacgcagcct----taccctgtttttttacacaggaggctgtttccaggacttgaacccgtg 43334208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4619142 - 4619235
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| |  |||| |||||||| |||||||    
T  4619142 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggctatttccaggacttgaacccgtg 4619235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 27328851 - 27328766
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttg 89  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||||| ||||| ||||||||    
T  27328851 gggttcgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagagactgtttccaggacttg 27328766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38879680 - 38879587
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||| ||||||| | ||||| |||||||| |||||||    
T  38879680 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttatacaagaggctgtttccaggacttgaacccgtg 38879587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 41014415 - 41014325
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||| |||||||||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| |||||||| |||||||    
T  41014415 gggtccaggaaggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttccaggacttgaacccgtg 41014325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 13801805 - 13801895
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggaccc 94  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| | | ||| |||||||| ||||    
T  13801805 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggctgcttccaggacttgaaccc 13801895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32703519 - 32703430
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  32703519 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttgaacccgtg 32703430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20135703 - 20135656
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  20135703 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcctt 20135656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8170022 - 8170111
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| |||||||||| || | ||||| |||||||| |||||||    
T  8170022 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaaaaggctgtttccaggacttgaacccgtg 8170111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19142982 - 19143063
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||||||||||||||||||||  ||||||||| | ||||||||||    |||||||||||||||||||||   ||||| ||||||||    
T  19142982 ggtccgggaaggggtcccacca--tttggtgtactgtacgcagcct----taccctgtttttacacaagaggttgtttccaggacttg 19143063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24448987 - 24448896
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt-ccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||| |||||     ||||||||||| || | ||||| |||||||| |||||||    
T  24448987 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagccttacccta----ttttttacacaaaaggctgtttccaggacttgaacccgtg 24448896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 43574703 - 43574620
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttt-tacacaagagaccgtttctaggacttg 89  Q
    |||||||||||||||||||||||  |||||| |||| ||||||||||    ||||||||||| |||||||||||  ||||| ||||||||    
T  43574703 gggtccgggaaggggtcccacca--tttggtatattgtacgcagcct----taccctgttttctacacaagagattgtttccaggacttg 43574620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 12477161 - 12477204
Alignment:
Q  4 tccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||| |||||||||||| |||||||||||    
T  12477161 tccgggaaggggtcccacca-ttttggtgtattgtacgcagcctt 12477204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34154852 - 34154897
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  34154852 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 34154897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7368493 - 7368413
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggactt 88  Q
    |||||||||||||||||||||||   |||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||    
T  7368493 gggtccgggaaggggtcccacca--attggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggactt 7368413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 208965 - 209031
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagag 72  Q
    |||||| |||||||||||||||| ||||||||||||  | |||||||    |||||||||||||||||||||    
T  208965 gggtccaggaaggggtcccacca-ttttggtgtattgaatgcagcct----taccctgtttttacacaagag 209031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2838875 - 2838811
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaaga 71  Q
    ||||||| |||||| |||||||||||  |||||||| |||||||||||    |||||||||||||||||||    
T  2838875 gggtccgagaagggatcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaaga 2838811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25622557 - 25622524
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgta 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  25622557 gggtccgggaaggggtcccaccattattggtgta 25622524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 35710405 - 35710319
Alignment:
Q  4 tccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||  |||||||||||  |||||||||    ||||||  ||||||||||||| | ||||| |||||||| |||||||    
T  35710405 tccgggaaggggtcccacca--tttggtgtattgaacgcagcct----taccct-attttacacaagaggctgtttccaggacttgaacccgtg 35710319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 29355893 - 29355986
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgttt-ttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    |||||||||| ||||||||||| | ||||| |||||||| |||||||    
T  29355893 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgtttcttacacaagaggctgtttccaggacttgaacccgtg 29355986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12221953 - 12222046
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| | |||||| |||||||    
T  12221953 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaagacttgaacccgtg 12222046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9161221 - 9161137
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||||| ||||||||||||||||| ||| |||||| ||||||||||    ||| ||||||||||||||||| | ||||| ||||||||    
T  9161221 gggtccgagaaggggtcccaccattattgatgtattgtacgcagcct----tactctgtttttacacaagaggctgtttccaggacttg 9161137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 1347059 - 1346970
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||| | | ||||| |||||||| |||||||    
T  1347059 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagtggctgtttccaggacttgaacccgtg 1346970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1354795 - 1354876
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| ||||||||    
T  1354795 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttg 1354876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2166448 - 2166541
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||    || ||||| |||||||||||||   ||||| |||||||| |||||||    
T  2166448 gggtccgggaaggggtcccaccattattggtgtattgtacgcaacct----tatcctgtattttacacaagaggttgtttccaggacttgaacccgtg 2166541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2178081 - 2178174
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||    || ||||| |||||||||||||   ||||| |||||||| |||||||    
T  2178081 gggtccgggaaggggtcccaccattattggtgtattgtacgcaacct----tatcctgtattttacacaagaggttgtttccaggacttgaacccgtg 2178174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12892106 - 12892064
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgca 43  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  12892106 gggtccgggaaggggtcccaccattattggtgtattatacgca 12892064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12886010 - 12885967
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcag 44  Q
    ||||| |||||||||||||||||||||| ||||||| |||||||    
T  12886010 gggtctgggaaggggtcccaccattttttgtgtattgtacgcag 12885967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 3116168 - 3116202
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtatt 36  Q
    |||||| ||||||||||||||||||||||||||||    
T  3116168 ggtccgagaaggggtcccaccatttttggtgtatt 3116202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 7947410 - 7947455
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||    
T  7947410 ggtccgggaagggggcccacca-ttttggtgtattgtacgcagcctt 7947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 2755466 - 2755507
Alignment:
Q  7 gggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||  ||||||||||||||||||||| |||||||||||    
T  2755466 gggaaggactcccaccatttttggtgtattgtacgcagcctt 2755507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 6024332 - 6024251
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctagga 85  Q
    |||||||||||| ||||||| |||| |||||||||| ||||||| ||    |||| || |||||||||||||| | ||||||||||    
T  6024332 gggtccgggaagaggtcccatcattattggtgtattgtacgcagtct----taccatgttttttacacaagaggctgtttctagga 6024251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 24734738 - 24734694
Alignment:
Q  4 tccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||| |||||| |||||| |||||| ||||    
T  24734738 tccgggaaggggtcccaccttttttgttgtattgtacgcaacctt 24734694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10795461 - 10795554
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||    |||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  10795461 gggtccaggaaggggtcccaccatttttggtgtattgtacgcagcct----taccctgtcttttacacaagaggctgtttccaggacttgaacccgtg 10795554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13628828 - 13628921
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgttt-ttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    |||||||||| ||||||||||| | ||||| |||||||| |||||||    
T  13628828 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgtttcttacacaagaggctgtttccaggacttgaacccgtg 13628921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 46421073 - 46421166
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  46421073 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 46421166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13730640 - 13730733
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  13730640 gggtccgggaaggggtcccaccattattggtgtattgtacacagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 13730733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 29366758 - 29366851
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||| ||||||| | ||||| |||||||| |||||||    
T  29366758 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttatacaagaggctgtttccaggacttgaacccgtg 29366851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45786252 - 45786299
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  45786252 gggtccgggaaggggtcccaccatttttggtgtattgtacgcagcctt 45786299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22122955 - 22123042
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccg 95  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||||| ||||| |||||||| |||||    
T  22122955 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagagactgtttccaggacttgaacccg 22123042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 22609883 - 22609795
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgt 96  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| | |||||| ||||||    
T  22609883 ggtccgggaaggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttccaagacttgaacccgt 22609795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8247725 - 8247818
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||| ||||||||||| |||||||||| |||||| |||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  8247725 gggtccgggaaggagtcccaccattattggtgtattgtacgcaacct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 8247818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 353387 - 353434
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  353387 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcctt 353434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 14987077 - 14986993
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| ||||||||    
T  14987077 ggtccgggaatgggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttg 14986993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 34420682 - 34420773
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  34420682 ggtccgggaaggggtcccacca-ttttggtgtatggtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 34420773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 47624160 - 47624095
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagag 72  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    |||||||||||||||||||||    
T  47624160 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgtttttacacaagag 47624095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 49013511 - 49013558
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  49013511 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcctt 49013558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 16735557 - 16735469
Alignment:
Q  3 gtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||    ||||||||||||  ||||||| | ||||| |||||||| |||||||    
T  16735557 gtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgtttttctacaagaggctgtttcgaggacttgaacccgtg 16735469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 1217207 - 1217118
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||| ||||||  |||||||| |||||||||||    |||||||||| ||||||||| | ||||| |||||||| |||||||    
T  1217207 gggtccgggaaggggtcccgccattt--ggtgtattgtacgcagcctt----accctgtttt-acacaagaggctgtttccaggacttgaacccgtg 1217118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 26869824 - 26869743
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||||| |||||||||||||||||  |||||||| |||||||||||    ||||||||||||||| |||| | ||||| ||||||||    
T  26869824 ggtccggcaaggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacaccagaggctgtttccaggacttg 26869743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31592966 - 31592878
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgt 96  Q
    ||||||||||||| |||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||| ||||||    
T  31592966 gggtccgggaaggagtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttgaacccgt 31592878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 40272850 - 40272938
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggaccc 94  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||||   ||||| |||||||| ||||    
T  40272850 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctgttttttacacaagaggttgtttccaggacttgaaccc 40272938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 45139515 - 45139561
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||| |||||||||||||||||||||||||||||| || ||||||||    
T  45139515 ggtctgggaaggggtcccaccatttttggtgtattgtatgcagcctt 45139561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9607324 - 9607239
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttg 89  Q
    ||||| |||||||||||||| |||| |||||||||| ||||||||||    ||||||| ||||||| |||||| | ||||| ||||||||    
T  9607324 gggtctgggaaggggtcccaacattattggtgtattctacgcagcct----taccctgttttttacgcaagaggctgtttccaggacttg 9607239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15797339 - 15797294
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  15797339 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 15797294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33926202 - 33926114
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggaccc 94  Q
    |||||| |||||||||||||||||| | |||||||| ||| |||||||    |||||||||||||||||||| |  |||| |||||||| ||||    
T  33926202 gggtccaggaaggggtcccaccattat-ggtgtattgtacacagcctt----accctgtttttacacaagaggctatttccaggacttgaaccc 33926114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34771402 - 34771447
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  34771402 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 34771447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 54484810 - 54484765
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  54484810 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 54484765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 39203632 - 39203552
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||||||||||||||||||||  ||||||||||| |||||| |||    ||||||| ||||||||||||| | ||||| ||||||||    
T  39203632 ggtccgggaaggggtcccacca--tttggtgtattgtacgcaacct----taccctg-ttttacacaagaggctgtttcaaggacttg 39203552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 54374383 - 54374429
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  54374383 gggtccgggaaggggtcccacca-ttttggtggattgtacgcagcctt 54374429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 5173758 - 5173792
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtatt 36  Q
    |||||||||||||| ||||||||||||||||||||    
T  5173758 ggtccgggaaggggccccaccatttttggtgtatt 5173792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 6411861 - 6411925
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagag 72  Q
    |||| |||||||||||||| |||||  |||||||| |||||||||||    ||||||||||||||||||||    
T  6411861 ggtctgggaaggggtcccatcattt--ggtgtattgtacgcagcctt----accctgtttttacacaagag 6411925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 7696948 - 7697014
Alignment:
Q  26 tttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||| |||||||||||    |||||||||| ||||||||||| ||||| |||||||| |||||||    
T  7696948 tttggtgtattgtacgcagcctt----accctgtttt-acacaagagactgtttccaggacttgaacccgtg 7697014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 10870021 - 10870080
Alignment:
Q  34 attttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||    |||||||||||||||||||| | ||||| |||||||| |||||||    
T  10870021 attttacgcagcctt----accctgtttttacacaagaggctgtttccaggacttgaacccgtg 10870080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 516531 - 516437
Alignment:
Q  1 gggtccgggaaggggtcccaccattttt-ggtgtattttacgcagccttccctaccctgttttt-acacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||| ||||||||||||| |||||||| ||| |||| | |||||||||    ||||||||||| ||||||||| | ||||| |||||||| |||||||    
T  516531 gggtcggggaaggggtcccgccattttttggtttattgtgcgcagcctt----accctgttttttacacaagaggctgtttccaggacttgaacccgtg 516437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 26573246 - 26573155
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||| ||||||||||||   |||||||||| ||||||||||    ||||||| |||||||||| ||| | ||||| |||||||| |||||||    
T  26573246 gggtccgggatggggtcccacca--attggtgtattgtacgcagcct----taccctgttttttacacaggaggctgtttccaggacttgaacccgtg 26573155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 52926257 - 52926302
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||| |||||||||  ||||||||||| |||||||||||    
T  52926257 gggtccgggaaggtgtcccacca--tttggtgtattgtacgcagcctt 52926302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30395764 - 30395857
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| |||||||| |||||||    
T  30395764 gggtccgggaaggggtcccaccattattggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggacttgaacccgtg 30395857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11596632 - 11596542
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||| |||||||||||||||||||  |||||||| |||||||||||    ||||||||||||||||||||   |||||||||||||| |||||||    
T  11596632 gggtccaggaaggggtcccaccattt--ggtgtattatacgcagcctt----accctgtttttacacaagaggttgtttctaggacttgaacccgtg 11596542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 27201768 - 27201679
Alignment:
Q  2 ggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgttt-ttacacaagagaccgtttctaggacttggaccc 94  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||| | ||||||||| | ||||| |||||||| ||||    
T  27201768 ggtccgggaaggggtcccaccatttttggtgtattgtacgcagcct----taccctgtttctgacacaagaggctgtttccaggacttgaaccc 27201679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19932791 - 19932838
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  19932791 gggtccgggaaggggtcccaccatttttggtgtattgtacgcagcctt 19932838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 32632601 - 32632685
Alignment:
Q  7 gggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||  |||||||| |||||||||||    |||||||||||||||||||| | ||||| |||||||| |||||||    
T  32632601 gggaaggggtcccaccattt--ggtgtattgtacgcagcctt----accctgtttttacacaagaggctgtttccaggacttgaacccgtg 32632685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18944765 - 18944680
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttg 89  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||    ||||||| |||||||||||||| | ||||| ||| ||||    
T  18944765 gggtccgggaaggggtcccaccattgttggtgtattgtacgcagcct----taccctgttttttacacaagaggctgtttccaggccttg 18944680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35005245 - 35005152
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||||||||||||||| || |||||||    ||||||| |||||||||||||| | ||||  | |||||| |||||||    
T  35005245 gggtccgggaaggggtcccaccatttttggtgtattgtatgcagcct----taccctgttttttacacaagaggctgttttcaagacttgaacccgtg 35005152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35117804 - 35117897
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||    |||||||| ||||||||||||| |  |||| |||||||| |||||||    
T  35117804 gggtccgggaaggggtcccatcatttttggtgtattgtacacagcct----taccctgtattttacacaagaggctatttccaggacttgaacccgtg 35117897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 35253225 - 35253314
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  35253225 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttcgaggacttgaacccgtg 35253314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18741995 - 18742042
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  18741995 gggtctgggaaggggtcccaccatttttggtgtattgtacgcagcctt 18742042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 23335956 - 23336021
Alignment:
Q  167 ctaggaaaaaacttagactctctaaagaccaatcagctattcttgaagaaaccttcaaagaacaca 232  Q
    ||||||| ||||| |||||||||||||| ||||| ||| ||||||||||||  |||||||||||||    
T  23335956 ctaggaagaaactaagactctctaaagatcaatctgcttttcttgaagaaagtttcaaagaacaca 23336021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 10668343 - 10668254
Alignment:
Q  5 ccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||| |||||||||| |||||| |||    |||| || |||||||||||||| | ||||| |||||||| |||||||    
T  10668343 ccgggaaggggtcccaccattattggtgtattgtacgcaacct----taccttgttttttacacaagaggctgtttccaggacttgaacccgtg 10668254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 20004128 - 20004221
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||||    |||| || ||||||||| |||| | ||||| |||||||| |||||||    
T  20004128 gggtctgggaaggggtcccaccattattggtgtattgtacgcagcct----taccttgttttttacacgagaggctgtttccaggacttgaacccgtg 20004221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34725136 - 34725225
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||| ||||||| ||||||||||    ||||||| ||||||||||||| | ||||| |||||||| |||||||    
T  34725136 gggtccgggaaggggtcccacca--tttagtgtattgtacgcagcct----taccctg-ttttacacaagaggctgtttccaggacttgaacccgtg 34725225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38478320 - 38478409
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||| |||||||| |||||||||  |||||||| |||||||||||    |||||||||| ||||||||| | |||||||||||||| |||||||    
T  38478320 gggtccgagaaggggttccaccattt--ggtgtattgtacgcagcctt----accctgtttt-acacaagaggctgtttctaggacttgaacccgtg 38478409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42304245 - 42304292
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  42304245 gggtccgggaaggggtcccaccattttttgtgtattgtacgcaacctt 42304292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 50606523 - 50606488
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtatt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  50606523 gggtccgggaaggggtcccaccatttttggtgtatt 50606488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 46247991 - 46248082
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  ||||||||||| ||||||| ||    ||||||| |||||||||||||| | ||||| | |||||| |||||||    
T  46247991 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagtct----taccctgttttttacacaagaggctgtttccaagacttgaacccgtg 46248082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 4349758 - 4349713
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  4349758 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 4349713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31382252 - 31382330
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctagga 85  Q
    |||||| ||||||||||||||||  ||||||||||| ||||||||||    || |||||||||||||||||| | ||||| ||||    
T  31382252 gggtccaggaaggggtcccacca--tttggtgtattgtacgcagcct----tatcctgtttttacacaagaggctgtttccagga 31382330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41319844 - 41319926
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttt-tacacaagagaccgtttctaggactt 88  Q
    |||| ||||||||||||||| |||||  |||||||| |||||||||||    |||||||||| |||||||||||| ||||| |||||||    
T  41319844 gggttcgggaaggggtcccatcattt--ggtgtattgtacgcagcctt----accctgttttttacacaagagactgtttccaggactt 41319926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 47214629 - 47214540
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||| |||||||||||||||||  ||||||||||| |||||| |||    ||||||| ||||| ||||||||| ||||| |||||||| |||||||    
T  47214629 gggtctgggaaggggtcccacca--tttggtgtattgtacgcaacct----taccctg-ttttaaacaagagactgtttccaggacttgaacccgtg 47214540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 22324997 - 22324925
Alignment:
Q  18 ccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggaccc 94  Q
    ||||||||||||||||||| || ||||||||    |||||||||||||||||||| | ||||| | |||||| ||||    
T  22324997 ccaccatttttggtgtattgtatgcagcctt----accctgtttttacacaagaggctgtttccaagacttgaaccc 22324925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 17470390 - 17470472
Alignment:
Q  8 ggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttt-tacacaagagaccgtttctaggacttggaccc 94  Q
    |||| ||||||||| ||||| |||||||| |||||||||||    |||||||||| |||||||||| | |||||||||||||| ||||    
T  17470390 ggaacgggtcccactatttt-ggtgtattgtacgcagcctt----accctgttttttacacaagaggctgtttctaggacttgaaccc 17470472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 18724583 - 18724674
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttt-tacacaagagaccgtttctaggacttggacccgtg 97  Q
    ||||||||||||||||||||  ||||  |||||||| ||| |||||||    |||||||||| |||||||||| | ||||| |||||||| |||||||    
T  18724583 gggtccgggaaggggtcccaagattt--ggtgtattgtacacagcctt----accctgttttttacacaagaggctgtttccaggacttgaacccgtg 18724674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 31442429 - 31442473
Alignment:
Q  3 gtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||    
T  31442429 gtccgggaaggggtcccacca-ttttggtgtattgtacgcatcctt 31442473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 46991924 - 46991833
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||  || |||||||| ||| ||||||    ||||||| ||||||||||||||   ||||| |||||||| |||||||    
T  46991924 gggtccgggaaggggtcccacca--ttcggtgtattgtacacagcct----taccctgttttttacacaagaggttgtttccaggacttgaacccgtg 46991833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12126875 - 12126920
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    ||||||||||||||||||||| |  ||||||||||| |||||||||||    
T  12126875 gggtccgggaaggggtcccacaa--tttggtgtattgtacgcagcctt 12126920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19414557 - 19414512
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||||||    
T  19414557 gggtacgggaaggggtcccacca--tttggtgtattgtacgcagcctt 19414512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 59070 - 58983
Alignment:
Q  7 gggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||||||||||| ||||||| ||    ||||||| |||||| ||||||| | ||||| |||||||| |||||||    
T  59070 gggaaggggtcccaccatttttggtgtattgtacgcagtct----taccctgttttttatacaagaggctgtttccaggacttgaacccgtg 58983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30674 - 30593
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    |||||||||||||||||||||||  ||||||||||| |||||||    |||||||||| ||||||||||||| | ||||| ||||||||    
T  30674 gggtccgggaaggggtcccacca--tttggtgtattgtacgcag----ccctaccctg-ttttacacaagaggctgtttccaggacttg 30593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24171 - 24216
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  24171 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 24216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 48672 - 48717
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||    
T  48672 gggtccgggaaggggtcccacca--tttggtgtattgtacgcagcctt 48717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4257 - 4163
Alignment:
Q  1 gggtccgggaaggggtcccacc-atttttggtgtattttacgcagccttccctaccctgt-ttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||| ||| |||||||||| |||||| |||    || ||||| |||||||||||||   ||||| |||||||| |||||||    
T  4257 gggtccgggaaggggtcccaccaattattggtgtattgtacgcaacct----tatcctgtattttacacaagaggttgtttccaggacttgaacccgtg 4163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10907 - 10841
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctg-tttttacacaagag 72  Q
    |||||||||||||||||||||||  |||||||||||  ||||||    |||||||||| ||||||||||||||    
T  10907 gggtccgggaaggggtcccacca--tttggtgtattggacgcag----ccctaccctgttttttacacaagag 10841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 13062 - 13144
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttg 89  Q
    ||||| |||||||||||||||||  || |||||||| ||||||||||    |||| ||||||||| |||||| | ||||| ||||||||    
T  13062 gggtctgggaaggggtcccacca--ttcggtgtattgtacgcagcct----taccttgtttttacgcaagaggctgtttccaggacttg 13144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10088 - 10177
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||  | ||||||||||| ||||||| ||    ||| ||| ||||||||||||| | ||||| |||||||| |||||||    
T  10088 gggtccgggaaggggtcccac--tatttggtgtattgtacgcagtct----tactctg-ttttacacaagaggctgtttccaggacttgaacccgtg 10177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 20416 - 20505
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagccttccctaccctgtttttacacaagagaccgtttctaggacttggacccgtg 97  Q
    |||||||||||||||||||||  | ||||||||||| ||||||| ||    ||| ||| ||||||||||||| | ||||| |||||||| |||||||    
T  20416 gggtccgggaaggggtcccac--tatttggtgtattgtacgcagtct----tactctg-ttttacacaagaggctgtttccaggacttgaacccgtg 20505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46928 - 46883
Alignment:
Q  1 gggtccgggaaggggtcccaccatttttggtgtattttacgcagcctt 48  Q
    |||||||||||||||||||||||  ||||||||||| |||||| ||||    
T  46928 gggtccgggaaggggtcccacca--tttggtgtattgtacgcaacctt 46883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University