View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_21 (Length: 262)
Name: NF9551_1D_low_21
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 32165413 - 32165673
Alignment:
| Q |
1 |
atcacatttatacatcactctgtttttgcgcttcttcactcccacttttcatcctctatcacaaatcctaccaacttccaaaacctctctccagggccat |
100 |
Q |
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| T |
32165413 |
atcacatttatacatcactctgtttttgcgcttcttcactcccacttttcatcctctatcacaaatcctaccaacttccaaaacctctctccagggccat |
32165512 |
T |
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| Q |
101 |
ctttctcttcctcatcttctccaaatccatgcacacattttccaatttggagcacaccaacacaatctcatagctacgcgtctgattggccactacgtat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32165513 |
ctttctcttcctcatcttctccaaatccatgcacacattttccaatttggagcacaccaacacaatctcatagctacgcgtctgattggccactacatat |
32165612 |
T |
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| Q |
201 |
ctcaaatcgatctcttgtgtctttcaccaactgcataatccaaacaacttccctttcaatga |
262 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32165613 |
ctcaaatcgatctc-tgtgtctttcaccaactgcataatccaaacaacttccctttcaatga |
32165673 |
T |
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