View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_3 (Length: 652)
Name: NF9551_1D_low_3
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Original strand, 17759278 - 17759897
Alignment:
| Q |
18 |
catcatattagaaaatgttcattcttttatatttaggttt---ggcatagtaaattgacaataattggttggcaggcttgttggggccgtaatccctcag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17759278 |
catcatattagaaaatgttcattcttttatatttaggtttcatggcatagtaaattgacaataattggttggcaggcttgttggggccgtaatccctcag |
17759377 |
T |
|
| Q |
115 |
gtgggagaaatacaagcagcaaagtggccaagcaagctgcattgggatttgttaaacgaacattggagcggtaccatcaatttgaagatactggcaagag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17759378 |
gtgggagaaatacaagcagcaaagtggccaagcaagctgcattgggatttgttaaacgaacattggagcggtaccatcaatttgaagatactggcaagag |
17759477 |
T |
|
| Q |
215 |
ctgcttcaacgagcctttattcaaggatatgttctttgctgcttcttcccagcaaagtgccatggaggctgaatctgcaaaacctcatgcttct---gtt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
17759478 |
ctgcttcaacgagcctttattcaaggatatgttctttgctgcttcttcccagcaaagtggcatggaggctgaatctgcaaaacctcatgcttcttctgtt |
17759577 |
T |
|
| Q |
312 |
tctctggaagcaagaacaggtgtcctgttcaatatctccctgaataaaaaatggtctaatctattattttgtatcttgctgtgtttcctatgatcatctt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17759578 |
tctctggaagcaagaacaggtgtcctgttcaatatctccttgaataaa---tggtctaatctattattttgtatcttgctgtgtttcctatgatcatctt |
17759674 |
T |
|
| Q |
412 |
agccaaaatctcacatggctttaaaactttaatttatgcttgtttgtgcaatcctgtctactctccttgtccctaatgatgtcttccctatgaaatactg |
511 |
Q |
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| T |
17759675 |
agccaaaatctcacatggctttaaacctttaatttatgcttgtttgtgcaatcctgtctactctccttgtccctgatgatgtcttccctatgaaatactg |
17759774 |
T |
|
| Q |
512 |
tgactaaggcaaaaagtactgccagctaagaaagtctactgccgactgagaggcgtccttttttcctagctgtcagtattttattcagtacatgattttg |
611 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17759775 |
cgactaaggcaaaaagtactgccagctaagaatgtctactgccgactgagaggcgtccttttttcctagctgtcagtattttattcagtacatgattttg |
17759874 |
T |
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| Q |
612 |
gacatagggaggggacaaatgat |
634 |
Q |
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| T |
17759875 |
gacatagggaggggacaaatgat |
17759897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 132 - 268
Target Start/End: Complemental strand, 52229732 - 52229596
Alignment:
| Q |
132 |
agcaaagtggccaagcaagctgcattgggatttgttaaacgaacattggagcggtaccatcaatttgaagatactggcaagagctgcttcaacgagcctt |
231 |
Q |
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|||||| ||| ||||||||||||| ||| |||||||||| | || |||||||| ||||| |||||||||||||| ||||||||||| |||| |||||||| |
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| T |
52229732 |
agcaaaatggtcaagcaagctgcaatggcatttgttaaatggacgttggagcgataccaccaatttgaagatacaggcaagagctgtttcagcgagcctt |
52229633 |
T |
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| Q |
232 |
tattcaaggatatgttctttgctgcttcttcccagca |
268 |
Q |
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||||||||||| ||||| | |||||||||||||||| |
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| T |
52229632 |
tattcaaggatttgttcctaactgcttcttcccagca |
52229596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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