View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9551_1D_low_34 (Length: 230)

Name: NF9551_1D_low_34
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9551_1D_low_34
NF9551_1D_low_34
[»] chr1 (14 HSPs)
chr1 (7-224)||(9299999-9300216)
chr1 (7-224)||(9257494-9257711)
chr1 (9-224)||(9364302-9364517)
chr1 (9-224)||(9242527-9242742)
chr1 (9-224)||(9337443-9337658)
chr1 (7-224)||(9466719-9466936)
chr1 (7-224)||(8926856-8927073)
chr1 (7-224)||(8939282-8939499)
chr1 (7-224)||(8962209-8962426)
chr1 (132-220)||(8979311-8979399)
chr1 (132-223)||(8861911-8862002)
chr1 (162-221)||(9070051-9070110)
chr1 (7-64)||(9420671-9420728)
chr1 (7-64)||(9437754-9437811)
[»] chr3 (1 HSPs)
chr3 (9-224)||(9171402-9171623)
[»] scaffold0690 (1 HSPs)
scaffold0690 (9-224)||(1511-1726)
[»] chr6 (1 HSPs)
chr6 (9-224)||(15910380-15910595)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 9300216 - 9299999
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctg 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300216 gaagatactctattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctg 9300117  T
Q  107 caacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgccc 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300116 caacgaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgccc 9300017  T
Q  207 attgttcccacttcattt 224  Q
    ||||||||||||||||||    
T  9300016 attgttcccacttcattt 9299999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 9257494 - 9257711
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9257494 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttgtcccatccaaggaaactatcttcgttgctaggaggagaaatgaatttctg 9257593  T
Q  107 caacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgccc 206  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||    
T  9257594 caacgaaccatttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaagcggacagcattgagatggtggattttaccc 9257693  T
Q  207 attgttcccacttcattt 224  Q
    || |||||||||||||||    
T  9257694 atagttcccacttcattt 9257711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 9364517 - 9364302
Alignment:
Q  9 agatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctgca 108  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||  ||||||| || | |  |||||||||||||||||||    
T  9364517 agatactcaataccatttgctatgcctagagcaattttttgcaacttatcccatccaaggaaatcatctttgctgttcgcgggagaaatgaatttctgca 9364418  T
Q  109 acaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccat 208  Q
    || ||||| |||  || ||||||||||||| ||||||| |||| ||||| || || |||||||||||||| || |||||||||||||| |||||||||||    
T  9364417 acgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcagaagccaagcaaacgaacgacattgagatggtgaattttgcccat 9364318  T
Q  209 tgttcccacttcattt 224  Q
     |||||||||||||||    
T  9364317 ggttcccacttcattt 9364302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 9242527 - 9242742
Alignment:
Q  9 agatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctgca 108  Q
    |||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||||  |||||||||| | || | |||||||||||||||||    
T  9242527 agatactcaatgccattggctatacctagagcaattttttgcaacttatcccatccaaggaaatcatctttgttgtttggggaagaaatgaatttctgca 9242626  T
Q  109 acaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccat 208  Q
    || ||||| ||||||| ||||||||||||| ||||||  |||||||||| || ||  ||||||||||||| || ||||| ||||| || || ||||||||    
T  9242627 acgaaccatttgggaaaaagtcatagactaaagcacggcgaaatccatccgcgcagtagccaagcaaacgaacgacatttagatgatgaatcttgcccat 9242726  T
Q  209 tgttcccacttcattt 224  Q
     |||||||||||||||    
T  9242727 ggttcccacttcattt 9242742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 9337658 - 9337443
Alignment:
Q  9 agatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctgca 108  Q
    |||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||  ||||||| || | |  |||||||||||||||||||    
T  9337658 agatactcaataccatttgctatgcctagagcaattttttgcaacttatcccatccaaggaaatcatctttgctgttcgcgggagaaatgaatttctgca 9337559  T
Q  109 acaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccat 208  Q
    || ||||| |||  || ||||||||||||| ||||||| |||| ||||| || || ||||| |||||||| || |||||||||||||| |||||||||||    
T  9337558 acgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcagaagccgagcaaacgaacgacattgagatggtgaattttgcccat 9337459  T
Q  209 tgttcccacttcattt 224  Q
     |||||||||||||||    
T  9337458 ggttcccacttcattt 9337443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 9466719 - 9466936
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctg 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |||  |||||||||| | || |||||||  ||||||||    
T  9466719 gaagatactcaattccattggctatgcctagagcaatttgttgcagcgtgtcccatccaagaaaagcatctttgttgtttggtggagaaagaaatttctg 9466818  T
Q  107 caacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgccc 206  Q
    |||  |||||||||| || |  || ||||||| | | || | ||||||||| || || ||||||||||||||||||||||| ||||| |||||||| |||    
T  9466819 caaagaaccacttggaaaaagatcgtagactaaaccgcggtaaaatccatcagcgcagaagccaagcaaacggacaacattaagatgatggatttttccc 9466918  T
Q  207 attgttcccacttcattt 224  Q
    || |||||||||||||||    
T  9466919 atagttcccacttcattt 9466936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 8927073 - 8926856
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctg 106  Q
    |||||||||| || |||||||| |||||||||||||||||||||||    ||||| |||||||||  ||| ||||||   || | ||||||||| || ||    
T  8927073 gaagatactcaatcccattggcaatgcctagagcaatttgttgcaataagtcccaaccaaggaaaacatccttgttgtcgggtgaagaaatgaagttttg 8926974  T
Q  107 caacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgccc 206  Q
    |||| ||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||| | ||| |||||||| |||    
T  8926973 caacgaaccattcgggaaaaagtcataaaccagagcacgataaaatccatcggcacaaaagccaagcaaccgaacaacattaacatgatggatttttccc 8926874  T
Q  207 attgttcccacttcattt 224  Q
    || |||||||| ||||||    
T  8926873 atagttcccacctcattt 8926856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 8939499 - 8939282
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctg 106  Q
    |||||||||| || |||||||| ||||| |||||||||||||||||    ||||| |||||||||  ||| ||||||  ||| | ||||||||| || ||    
T  8939499 gaagatactcaatcccattggcaatgccaagagcaatttgttgcaataagtcccaaccaaggaaaacatccttgttgtcaggtgaagaaatgaaattttg 8939400  T
Q  107 caacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgccc 206  Q
    |||  ||||| ||||||| |||||||| || | |||||||| ||||||||||||||||||||||||||| ||||||||||| | ||| || ||||| |||    
T  8939399 caatgaaccatttgggaaaaagtcataaaccaaagcacgataaaatccatcggcacaaaagccaagcaaccggacaacattaacatgatgaatttttccc 8939300  T
Q  207 attgttcccacttcattt 224  Q
    || |||||||||||||||    
T  8939299 atagttcccacttcattt 8939282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 8962426 - 8962209
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctg 106  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||    ||||| |||||||||  ||| ||||||  ||| | ||||||||| || ||    
T  8962426 gaagatactcaattccattggcaatgcctagagcaatctgttgcaataagtcccaaccaaggaaaacatccttgttgtcaggtgaagaaatgaaattttg 8962327  T
Q  107 caacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgccc 206  Q
    |||| ||||| | ||||| |||||||| || | |||||||| ||||||||| || ||||||||||| || ||||||||||| | ||| |||||||| |||    
T  8962326 caacgaaccattagggaaaaagtcataaaccaaagcacgataaaatccatcagcgcaaaagccaagtaaccggacaacattaacatgatggatttttccc 8962227  T
Q  207 attgttcccacttcattt 224  Q
    || ||||| |||||||||    
T  8962226 atagttcctacttcattt 8962209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 8979311 - 8979399
Alignment:
Q  132 tagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttc 220  Q
    ||||| ||| ||||||||| ||| || ||||| ||||||||||| || ||||||||||  ||||||||||| |||||  ||||||||||    
T  8979311 tagacaagaacacgatgaattccctctgcacagaagccaagcaatcgaacaacattgatgtggtggatttttcccataattcccacttc 8979399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 8861911 - 8862002
Alignment:
Q  132 tagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatt 223  Q
    ||||| ||||| || |||| |||||| || || |||||||||||||| || || ||||  |||||||||||||||||  |||||||||||||    
T  8861911 tagacaagagcgcggtgaattccatctgcgcagaagccaagcaaacgaaccacgttgatgtggtggattttgcccataattcccacttcatt 8862002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 9070051 - 9070110
Alignment:
Q  162 caaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttca 221  Q
    ||||||||||||||||| || ||||||| |||||| |||||||||||  || ||||||||    
T  9070051 caaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttca 9070110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 9420671 - 9420728
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatcc 64  Q
    |||||||||| || || ||||||||||| |||||||||||||| | ||| ||||||||    
T  9420671 gaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatcc 9420728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 9437754 - 9437811
Alignment:
Q  7 gaagatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatcc 64  Q
    |||||||||| || || ||||||||||| |||||||||||||| | ||| ||||||||    
T  9437754 gaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatcc 9437811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 9171623 - 9171402
Alignment:
Q  9 agatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgt-------tgctaggaggagaaatgaat 101  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||       | ||   |   |||||||||    
T  9171623 agatactcaattccattggctattcctagagcaatttgttgcaacttgtcccatctaaggaaactatctttgtctccctcttctgtcatt-gaaatgaat 9171525  T
Q  102 ttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattt 201  Q
    ||||||||  ||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  9171524 ttctgcaaagaaccatttgggaaaaaatcatagactagagcacgatgaaatccatcggcgcaaaagccaagcaaacggacaacatttagatggtggattt 9171425  T
Q  202 tgcccattgttcccacttcattt 224  Q
    ||||||| |||||||||||||||    
T  9171424 tgcccatagttcccacttcattt 9171402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 1726 - 1511
Alignment:
Q  9 agatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctgca 108  Q
    |||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| |  |  |||| ||||||||||| |    
T  1726 agatactcaatgccattagctatgcctagagcaatttgttgcaatttatcccatccaaggaaatcatctttgttgttcaggtgagatatgaatttctgta 1627  T
Q  109 acaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccat 208  Q
    || ||||| |||| || |||||||| |||| ||||||| |||| ||||| || ||||||||||||||||| || ||||||||||||||||||||||||||    
T  1626 acgaaccatttggaaaaaagtcataaactaaagcacgacgaaaaccatctgcgcaaaagccaagcaaacgaacgacattgagatggtggattttgcccat 1527  T
Q  209 tgttcccacttcattt 224  Q
     |||||||||||||||    
T  1526 ggttcccacttcattt 1511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 15910380 - 15910595
Alignment:
Q  9 agatactcgattccattggctatgcctagagcaatttgttgcaacttatcccatccaaggaaactatctttgttgctaggaggagaaatgaatttctgca 108  Q
    |||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| | ||  |||| |||||||| || |    
T  15910380 agatactcaatgccattagctatgcctagagcaatttgttgcaatttatcccatccaaggaaatcatctttgttgttcgggtgagatatgaatttttgta 15910479  T
Q  109 acaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccat 208  Q
    || ||||| |||| || |||||||| |||| |||||||||||| ||||| |  |||||||| |||||||| || ||||||||||||||||||||||||||    
T  15910480 acgaaccatttggaaaaaagtcataaactaaagcacgatgaaaaccatctgagcaaaagccgagcaaacgaacgacattgagatggtggattttgcccat 15910579  T
Q  209 tgttcccacttcattt 224  Q
     |||||||||||||||    
T  15910580 ggttcccacttcattt 15910595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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