View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_36 (Length: 229)
Name: NF9551_1D_low_36
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_36 |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35071925 - 35072153
Alignment:
| Q |
1 |
gaagccttaacctgatccaatttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071925 |
gaagccttaacctgatccaatttacagttagctggaagagtaaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtat |
35072024 |
T |
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| Q |
101 |
cttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072025 |
cttgtctctccatgctcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagcttt |
35072124 |
T |
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| Q |
201 |
gaatacatgggcttctggagtttccttcc |
229 |
Q |
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| T |
35072125 |
gaatacatgggcttctggagtttccttcc |
35072153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 35072805 - 35072993
Alignment:
| Q |
41 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
140 |
Q |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || ||| ||||||| || |||||||||| || |
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| T |
35072805 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaac |
35072904 |
T |
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| Q |
141 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcc |
229 |
Q |
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| T |
35072905 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttcc |
35072993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 35107055 - 35106867
Alignment:
| Q |
41 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
140 |
Q |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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| T |
35107055 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaac |
35106956 |
T |
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| Q |
141 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcc |
229 |
Q |
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| T |
35106955 |
cctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttcc |
35106867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 24040861 - 24041049
Alignment:
| Q |
41 |
taaaactcctcatgaatttaccactactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcctctctcctgttatctgaagcac |
140 |
Q |
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|||| |||||||||||||| ||||| |||||||| ||||| || ||| |||||| |||||| | | || | | ||||||| || |||||||||| || |
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| T |
24040861 |
taaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaac |
24040960 |
T |
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| Q |
141 |
tcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttccttcc |
229 |
Q |
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| T |
24040961 |
cctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttcc |
24041049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 24014379 - 24014492
Alignment:
| Q |
116 |
tcctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttc |
215 |
Q |
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|||||||||| |||||||||| || || || |||||| ||||| ||||||||||| || ||||| || || | |||||| ||||| ||||| ||||| |
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| T |
24014379 |
tcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttc |
24014478 |
T |
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| Q |
216 |
tggagtttccttcc |
229 |
Q |
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| T |
24014479 |
tggggtctccttcc |
24014492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 3123163 - 3123082
Alignment:
| Q |
146 |
catcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctggagtttcctt |
227 |
Q |
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||||||||| ||||| ||||| || || || |||| |||||| | |||||||||||| ||||| |||||| |||||||||| |
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| T |
3123163 |
catcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagagtttcctt |
3123082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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