View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9551_1D_low_37 (Length: 228)
Name: NF9551_1D_low_37
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 22198682 - 22198474
Alignment:
| Q |
17 |
caatcaatttatcactttggactttgaaacccacaatttcagtttgactcggataatagatgtgtggaggggtcatactcatccatgccacatctgagtt |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22198682 |
caatcaatttatcactttgggctttgaaacccacaatttcagtttgacccggataatagatctgtggaggggtcatactcatccatgccacatctgggtt |
22198583 |
T |
|
| Q |
117 |
ttatgtagaactacttagtttttgttcggaagaagacttactttcgataccgccattgattttacctaaatcttatttaatttcttcaaccttacgcaca |
216 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
22198582 |
ttttgtagaaccacttagtttttgttcggaagaagacttactttcggtaccgccattgattttacctaaatcttgtttaatttcttcaaccttgcgcgca |
22198483 |
T |
|
| Q |
217 |
atttgaaac |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
22198482 |
atttgaaac |
22198474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 22195925 - 22195718
Alignment:
| Q |
17 |
caatcaatttatcactttggactttgaaacccacaatttcagtttgactcggataatagatgtgtggaggggtcatactcatccatgccacatctgagtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| | ||| ||| |
|
|
| T |
22195925 |
caatcaatttatcactttggactttgaaacccacaatttcagtttgacccggataatagatatgtggaggggtcatactcatc-atgccatacctgggtt |
22195827 |
T |
|
| Q |
117 |
ttatgtagaactacttagtttttgttcggaagaagacttactttcgataccgccattgattttacctaaatcttatttaatttcttcaaccttacgcaca |
216 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||| ||| || |
|
|
| T |
22195826 |
tcttttagaactacttagtttttgttcggaagaagacttactttcggtaccgtgattgattttacctaaatattgtttaatttcttcaaccttgcgcgca |
22195727 |
T |
|
| Q |
217 |
atttgaaac |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
22195726 |
atttgaaac |
22195718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University