View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_4 (Length: 650)
Name: NF9551_1D_low_4
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 39126655 - 39127281
Alignment:
| Q |
1 |
attgtaatatactgttactagcagcatgtattaggcatctcttactgatacattactggtgatacaactattggtgcaagttctgtctggaaacaatggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
39126655 |
attgtaatatactgttactagcagcatgtattaggcatctcttactgatacattactggtggtaccactattggtgcaagttctgtctggaaacaatggc |
39126754 |
T |
|
| Q |
101 |
tcctggataccactattggtgccagtgccagcacacttggcaggacattcccattcccaagcaacaatggtgaatgttttagctttgagtttgttggtaa |
200 |
Q |
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| T |
39126755 |
tcctggataccactattggtgc------cagcacacttgacaggacactcccattcccaagcaacaatggtgaatgttttagctttgagtttgttggtaa |
39126848 |
T |
|
| Q |
201 |
tttcactcacagcagcgagcattttctttccactccaaatcaataacaagccgcaaacacaatttatcaaagaacgacagggtctctgttgttgaatacg |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39126849 |
tttcactcacagcagcgagcattttctttccaccccaaatcaataacaagccgcaaacacaatttagcaaagaacgacagggtctctgttgttgaatacg |
39126948 |
T |
|
| Q |
301 |
accaagatagttaccaaagcaccaaatctcaatcttaccactcatcagaacatggataatggacaagttctctatggagaatccatgtatcttgtaaaca |
400 |
Q |
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| T |
39126949 |
accaagatagttaccaaagcaccaaatctcaatcttaccactcatcagaacatggataatggacaagttctctatggagaatccatgtatcttgtaaaca |
39127048 |
T |
|
| Q |
401 |
taatagcaagcaatggcaaagaacttgagccggtttacctaagtggtggagatagtgagagtcaatttgcctcaatactctcttccaaaggtcaaatttc |
500 |
Q |
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| T |
39127049 |
ttatagcaagcaatggcaaagaacttgagccggtttacctaagtggtggagatagtgagagtcaatttgcctcaatactctcttccaaaggtcaaatttc |
39127148 |
T |
|
| Q |
501 |
aaggcaaaacggtcatatgcgattgaggtgtcaatggaagatcagaaaagggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacac |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39127149 |
aaggcaaaacggtcatatgcgattgaggtgtcaatggaagatcagaaaagggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacac |
39127248 |
T |
|
| Q |
601 |
agagcttaacttggaagaagattcaattgatgt |
633 |
Q |
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| T |
39127249 |
agagcttaacttggaagaagattcaattgatgt |
39127281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 351 - 640
Target Start/End: Complemental strand, 39480428 - 39480137
Alignment:
| Q |
351 |
catggataatggacaagttctctatggagaatccatgtatcttgtaaacataatagcaagcaatggcaaagaacttgagccggtttacctaagtggtgga |
450 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||||| ||||||||| |||||| |
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| T |
39480428 |
catgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaacttgagctggtttacctctctggtggg |
39480329 |
T |
|
| Q |
451 |
gatagtgagagtcaattt-gcctcaatac-tctcttccaaaggtcaaatttcaaggcaaaacggtcatatgcgattgaggtgtcaatggaagatcagaaa |
548 |
Q |
| |
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| T |
39480328 |
gatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtgatcgaggtgtcaacggaagatcagaaa |
39480229 |
T |
|
| Q |
549 |
agggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgtccatctc |
640 |
Q |
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| T |
39480228 |
agggtcaagctgtgaaggaagcaggtggtgctgctatgatcttggcaaacacagagctaaacttggaagaagattcggttgatgttcatctc |
39480137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 34705210 - 34705155
Alignment:
| Q |
177 |
ttttagctttgagtttgttggtaatttcactcacagcagcgagcattttctttcca |
232 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||||||| |||||||||| |||| |
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|
| T |
34705210 |
ttttagctttgagcctgttagtaacttcactcacagcagcaagcattttctctcca |
34705155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 11593176 - 11593123
Alignment:
| Q |
287 |
tgttgttgaatacgaccaagatagttaccaaagcacc-aaatctcaatcttacc |
339 |
Q |
| |
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|||||||||||| || |||||| ||||||||| |||| |||||||||||||||| |
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| T |
11593176 |
tgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacc |
11593123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 11644943 - 11644996
Alignment:
| Q |
287 |
tgttgttgaatacgaccaagatagttaccaaagcacc-aaatctcaatcttacc |
339 |
Q |
| |
|
|||||||||||| || |||||| ||||||||| |||| |||||||||||||||| |
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| T |
11644943 |
tgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacc |
11644996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 11593295 - 11593227
Alignment:
| Q |
164 |
acaatggtgaatgttttagctttgagtttgttggtaatttcactcacagcagcgagcattttctttcca |
232 |
Q |
| |
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|||||| |||| ||||||||||||||||||| ||| |||||| ||| |||| |||||||||| |||| |
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| T |
11593295 |
acaatgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctcca |
11593227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 11644824 - 11644892
Alignment:
| Q |
164 |
acaatggtgaatgttttagctttgagtttgttggtaatttcactcacagcagcgagcattttctttcca |
232 |
Q |
| |
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|||||| |||| ||||||||||||||||||| ||| |||||| ||| |||| |||||||||| |||| |
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| T |
11644824 |
acaatgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctcca |
11644892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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