View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_41 (Length: 219)
Name: NF9551_1D_low_41
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 42305640 - 42305455
Alignment:
| Q |
1 |
ggtattcctgtctcataatgtatatttcaaaggtgttcattattcatatgatgaacagctagaaagattnnnnnnncattccttctaatttatatataat |
100 |
Q |
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| T |
42305640 |
ggtattcctgtctcataatgtatatttcaaaggtgttcattattcatatgatgaacagctagaaagctcaaaaaaacattccttctaatttatatataat |
42305541 |
T |
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| Q |
101 |
taatttggacttcgaatagtaaattatttatcacatatttgtaatgtgctattatcaataagacaacattgaatgcaaatcttacc |
186 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42305540 |
taatatggacttcgaatagtaaattatttatcacatatttgtaatgtgctattatcaataagacaacattgaatgcaaatcttacc |
42305455 |
T |
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