View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_45 (Length: 215)
Name: NF9551_1D_low_45
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_45 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 45523235 - 45523435
Alignment:
| Q |
15 |
catcatcttttagaagagaataaacttctgctggtgtcttcacatcatctgccagaatgttttcccagtatccaaccacagtagactgatttgttgaggg |
114 |
Q |
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| T |
45523235 |
catcatcttttagaagagaataaacttctgctggtgtcttcacatcatctgccagaatgttttcccagtatccaaccacagtagactgatttgttgaggg |
45523334 |
T |
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| Q |
115 |
atcatattcttcacggtgtagtagcattcgcccaccagactgtctaatctcagccagtgtgtcttctttcagccgtgcttccatgtgtccaacctgaatt |
214 |
Q |
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| T |
45523335 |
atcatattcttcacggtgtagtagcattcgcccaccagactgtctaatctcagccagtgtgtcttctttcagccgtgcttccatgtgttcaacctgaatt |
45523434 |
T |
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| Q |
215 |
a |
215 |
Q |
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| T |
45523435 |
a |
45523435 |
T |
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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 38079761 - 38079576
Alignment:
| Q |
17 |
tcatcttttagaagagaataaacttctgctggtgtcttcacatcatctgccagaatgttttcccagtatccaaccacagtagactgatttgttgagggat |
116 |
Q |
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| T |
38079761 |
tcatcctttagagcagaataaacttctacagttgttttcacatcttctgccaaaatgttttcccagtatccgacaacattagattggtttgttgaagggt |
38079662 |
T |
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| Q |
117 |
catattcttcacggtgtagtagcattcgcccaccagactgtctaatctcagccagtgtgtcttctttcagccgtgcttccatgtgt |
202 |
Q |
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| T |
38079661 |
tatattcttcacggtgaagaggcatcagcccaccagactgtctaatttcagctattatatcttctttcaaccttgcttccatgtgt |
38079576 |
T |
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