View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_49 (Length: 211)
Name: NF9551_1D_low_49
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 3912453 - 3912634
Alignment:
| Q |
23 |
agggtttactaatcttttgcttaagacaaattctgaagacttgagtttgtcagagagtggaggtgaatctaacaatggtggtgatggtggaagtggaagt |
122 |
Q |
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| T |
3912453 |
agggtttactaatcttttgcttaagacaaattctgaagacttgagtttgtcagagagtggaggtgaatctaacaatggtggtgatggtggaagtggaagt |
3912552 |
T |
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| Q |
123 |
ggaagtgaattctatgaagataacaataactactggaataatattcttaatttagttaattcttctccctctgattcaccaa |
204 |
Q |
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| T |
3912553 |
ggaagtgaattctatgaagataacaataactactggaataatattcttaatttagttaattcttctccctcagattctccaa |
3912634 |
T |
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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 2950668 - 2950746
Alignment:
| Q |
121 |
gtggaagtgaattctatgaagataacaataactactggaataatattcttaatttagttaattcttctccctctgattc |
199 |
Q |
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| T |
2950668 |
gtggaagtgatttcaatgaagataacaagaactattggaacaacattcttaatttagttaattcttcgccttctgattc |
2950746 |
T |
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