View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_1D_low_51 (Length: 208)
Name: NF9551_1D_low_51
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_1D_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 58 - 202
Target Start/End: Complemental strand, 7534768 - 7534624
Alignment:
| Q |
58 |
tttccgttgtaaattagagaagtattaattaactgatttggagtgaacaatttgaaaaagcaggagtaggtaacatcgttggcatactcaaaatgagttc |
157 |
Q |
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| T |
7534768 |
tttccgttgtaaattagagaagtattaattaactgatttggagtgaacaatttgaaaaagcaggagtaggtaacatcgttggcatactcaaaatgagttc |
7534669 |
T |
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| Q |
158 |
aaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaact |
202 |
Q |
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| T |
7534668 |
aaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaact |
7534624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 46965171 - 46965119
Alignment:
| Q |
150 |
atgagttcaaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaact |
202 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46965171 |
atgagttcgaaagaaagttgcagaagcgaacttcgcatcgcaattcgtcaact |
46965119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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