View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9551_1D_low_55 (Length: 201)

Name: NF9551_1D_low_55
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9551_1D_low_55
NF9551_1D_low_55
[»] chr3 (4 HSPs)
chr3 (20-201)||(3175790-3175974)
chr3 (20-201)||(3175607-3175788)
chr3 (14-105)||(3175970-3176061)
chr3 (173-201)||(3175577-3175605)
[»] chr1 (9 HSPs)
chr1 (20-136)||(24540985-24541101)
chr1 (41-105)||(24541195-24541259)
chr1 (161-201)||(24540943-24540983)
chr1 (154-198)||(24541026-24541070)
chr1 (80-135)||(24540865-24540920)
chr1 (155-201)||(24541120-24541166)
chr1 (68-105)||(24540943-24540980)
chr1 (56-105)||(24541114-24541163)
chr1 (161-201)||(24541222-24541262)
[»] chr5 (9 HSPs)
chr5 (20-136)||(20964155-20964271)
chr5 (41-105)||(20963994-20964058)
chr5 (47-136)||(20964335-20964424)
chr5 (154-201)||(20964087-20964134)
chr5 (154-198)||(20964186-20964230)
chr5 (161-197)||(20964277-20964313)
chr5 (38-105)||(20964090-20964157)
chr5 (161-201)||(20963991-20964031)
chr5 (68-104)||(20964277-20964313)
[»] chr2 (6 HSPs)
chr2 (30-136)||(41524583-41524689)
chr2 (47-136)||(41524764-41524853)
chr2 (30-129)||(41524927-41525026)
chr2 (47-136)||(41524431-41524519)
chr2 (154-201)||(41524868-41524915)
chr2 (41-105)||(41525125-41525189)
[»] chr4 (1 HSPs)
chr4 (44-103)||(16591879-16591938)
[»] chr6 (1 HSPs)
chr6 (41-96)||(14675026-14675081)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 3175790 - 3175974
Alignment:
Q  20 gaaggggcgagggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaatag 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3175790 gaaggggcgggggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagttttaatag 3175889  T
Q  120 gggcatgagcaggagag---nnnnnnnnnnnnnnnnnggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    |||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3175890 gggcatgagcaggagagtgatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 3175974  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 3175607 - 3175788
Alignment:
Q  20 gaaggggcgagggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaatag 119  Q
    ||||||||  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  3175607 gaaggggcaggggaaggtgagtgatgttggtggtggtgatgtgttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaacgaaggcttaatag 3175706  T
Q  120 gggcatgagcaggagagnnnnnnnnnnnnnnnnnggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    |||||||||||||||||                 |||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  3175707 gggcatgagcaggagagtgatgatgatgatgatgggttgggggttttgcagggtgacgatgatgtaaaggagtgtgaacatg 3175788  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 3175970 - 3176061
Alignment:
Q  14 acatcagaaggggcgagggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 105  Q
    |||| |||||| || |||||||||||||||||||||||| ||||||| || || ||||| |||||||| |||||||||||||||||||||||    
T  3175970 acatgagaaggagcaagggatggtgagtgatgttggtggcggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaac 3176061  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 3175577 - 3175605
Alignment:
Q  173 tgacgaggatgtaaaggagtgtgaacatg 201  Q
    |||||||||||||||||||||||||||||    
T  3175577 tgacgaggatgtaaaggagtgtgaacatg 3175605  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 24540985 - 24541101
Alignment:
Q  20 gaaggggcgagggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaatag 119  Q
    ||||||||  ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24540985 gaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagacttaatag 24541084  T
Q  120 gggcatgagcaggagag 136  Q
    ||| |||||||||||||    
T  24541085 gggaatgagcaggagag 24541101  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 24541195 - 24541259
Alignment:
Q  41 tgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 105  Q
    |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||    
T  24541195 tgatgttggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaac 24541259  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 24540943 - 24540983
Alignment:
Q  161 ggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  24540943 ggttttgcagggtgacgaggatgtaaaggagtgtgaacatg 24540983  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 24541026 - 24541070
Alignment:
Q  154 ggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaac 198  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||||    
T  24541026 ggttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 24541070  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 24540865 - 24540920
Alignment:
Q  80 tgaggaggatgtaaaggagtgtgaaccggagtcttaataggggcatgagcaggaga 135  Q
    ||||||||| |||||||  |||||||||||| ||||||||| ||||| ||||||||    
T  24540865 tgaggaggaagtaaaggtttgtgaaccggaggcttaataggagcatgggcaggaga 24540920  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 24541120 - 24541166
Alignment:
Q  155 gttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    ||||| |||||||| || ||||||||||||||||||| |||||||||    
T  24541120 gttgggggttttgctgggtgacgaggatgtaaaggagggtgaacatg 24541166  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 24540943 - 24540980
Alignment:
Q  68 ggtttggcagggtgaggaggatgtaaaggagtgtgaac 105  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  24540943 ggttttgcagggtgacgaggatgtaaaggagtgtgaac 24540980  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 24541114 - 24541163
Alignment:
Q  56 tgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 105  Q
    ||||||||||| ||||| || |||||| ||||||||||||||| ||||||    
T  24541114 tgatgagttgggggttttgctgggtgacgaggatgtaaaggagggtgaac 24541163  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 24541222 - 24541262
Alignment:
Q  161 ggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    ||||| ||||| ||| |||||||||||||||||||||||||    
T  24541222 ggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 24541262  T

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Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 20964271 - 20964155
Alignment:
Q  20 gaaggggcgagggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaatag 119  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  20964271 gaaggggcgggggatggtgagtgatgttggtggtggtgatgggttggaggtttggcaggatgaggatgatgtaaaggagtgtgaaccggaggcttaatag 20964172  T
Q  120 gggcatgagcaggagag 136  Q
    ||||||| || ||||||    
T  20964171 gggcatgtgcgggagag 20964155  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 20964058 - 20963994
Alignment:
Q  41 tgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 105  Q
    ||||| |||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||    
T  20964058 tgatgctggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaac 20963994  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 20964424 - 20964335
Alignment:
Q  47 tggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaataggggcatgagcaggagag 136  Q
    ||||| ||||| |||||||| || || ||||  ||||| ||| ||||||| |||||||| ||||  ||||||||||||||||||||||||    
T  20964424 tggtgatggtggtgagttgggggctttgcagattgagggggaagtaaaggtgtgtgaactggaggtttaataggggcatgagcaggagag 20964335  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 20964134 - 20964087
Alignment:
Q  154 ggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  20964134 ggttgggggttttgcagggtgacgaggatgtataggagtgtgaacatg 20964087  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 20964230 - 20964186
Alignment:
Q  154 ggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaac 198  Q
    |||||||||||| ||||||||| || |||||||||||||||||||    
T  20964230 ggttggaggtttggcaggatgaggatgatgtaaaggagtgtgaac 20964186  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 20964313 - 20964277
Alignment:
Q  161 ggttttgcaggatgacgaggatgtaaaggagtgtgaa 197  Q
    ||||||||||| |||||||||||||||||||||||||    
T  20964313 ggttttgcagggtgacgaggatgtaaaggagtgtgaa 20964277  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 20964157 - 20964090
Alignment:
Q  38 gagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 105  Q
    |||||||| || || || ||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||    
T  20964157 gagtgatgatgatgatgatgatgggttgggggttttgcagggtgacgaggatgtataggagtgtgaac 20964090  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 20964031 - 20963991
Alignment:
Q  161 ggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    ||||| ||||| ||| |||||||||||||||||||||||||    
T  20964031 ggtttagcagggtgaggaggatgtaaaggagtgtgaacatg 20963991  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 20964313 - 20964277
Alignment:
Q  68 ggtttggcagggtgaggaggatgtaaaggagtgtgaa 104  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  20964313 ggttttgcagggtgacgaggatgtaaaggagtgtgaa 20964277  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 41524583 - 41524689
Alignment:
Q  30 gggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaataggggcatgagc 129  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41524583 gggatggtgagtggtgttggtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaaccggaggcttaataggggcatgagc 41524682  T
Q  130 aggagag 136  Q
     ||||||    
T  41524683 tggagag 41524689  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 41524764 - 41524853
Alignment:
Q  47 tggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaataggggcatgagcaggagag 136  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  41524764 tggtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaaccggaggcttaataggggcatgagctggagag 41524853  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 41524927 - 41525026
Alignment:
Q  30 gggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaataggggcatgagc 129  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| | ||| | ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  41524927 gggatggtgagtggtgttggtggtggtgatgggttggaggtttggtatggtaaagaggatgtaaaggagtgtgaaccagaggcttaataggggcatgagc 41525026  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 41524431 - 41524519
Alignment:
Q  47 tggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagtcttaataggggcatgagcaggagag 136  Q
    ||||| ||||| || ||||| || || ||||||||||||||| ||||||| ||||||| ||||| ||||||||||   ||||||||||||    
T  41524431 tggtgatggtggtgggttgggggctttgcagggtgaggaggaagtaaaggtgtgtgaa-cggagacttaatagggatttgagcaggagag 41524519  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 41524868 - 41524915
Alignment:
Q  154 ggttggaggttttgcaggatgacgaggatgtaaaggagtgtgaacatg 201  Q
    |||||| ||||||||||| |||||||||| ||||||||| ||||||||    
T  41524868 ggttgggggttttgcagggtgacgaggatataaaggagtatgaacatg 41524915  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 41525125 - 41525189
Alignment:
Q  41 tgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaac 105  Q
    ||||| || ||||||||||| |||||||||||| | | |||||||||||| | ||||||| ||||    
T  41525125 tgatgctgatggtggtgatgggttggaggtttgactgtgtgaggaggatgaacaggagtgggaac 41525189  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 16591938 - 16591879
Alignment:
Q  44 tgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtga 103  Q
    ||||||||||||||| | ||||||||||| |||||||||| ||| |||||||||||||||    
T  16591938 tgttggtggtggtgacgggttggaggtttagcagggtgagaagggtgtaaaggagtgtga 16591879  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 14675026 - 14675081
Alignment:
Q  41 tgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaagg 96  Q
    |||||||||||||||||||| ||| | ||||| ||||||||||| ||| |||||||    
T  14675026 tgatgttggtggtggtgatgggttaggggtttagcagggtgaggtggaggtaaagg 14675081  T

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