View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9551_1D_low_8 (Length: 416)

Name: NF9551_1D_low_8
Description: NF9551_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9551_1D_low_8
NF9551_1D_low_8
[»] chr8 (20 HSPs)
chr8 (12-416)||(36951189-36951593)
chr8 (236-359)||(34539042-34539165)
chr8 (217-358)||(38453906-38454047)
chr8 (236-368)||(34544782-34544914)
chr8 (244-358)||(34533880-34533994)
chr8 (228-415)||(34548474-34548663)
chr8 (244-359)||(38453629-38453744)
chr8 (244-358)||(39848730-39848844)
chr8 (243-359)||(34533741-34533857)
chr8 (243-359)||(34916166-34916282)
chr8 (243-359)||(34916442-34916558)
chr8 (301-368)||(34549190-34549257)
chr8 (301-355)||(34533607-34533661)
chr8 (301-359)||(39848649-39848707)
chr8 (244-358)||(38633019-38633132)
chr8 (294-355)||(38632931-38632992)
chr8 (243-358)||(34916305-34916420)
chr8 (277-358)||(34916581-34916662)
chr8 (301-358)||(38632797-38632854)
chr8 (243-359)||(38453767-38453883)
[»] chr4 (2 HSPs)
chr4 (236-352)||(44474588-44474704)
chr4 (243-355)||(44474457-44474569)


Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Original strand, 36951189 - 36951593
Alignment:
Q  12 atggacatcaggagcaaagtatgagggcgaattctccgggagttatcttcatggtcacggcacattcacaaaatcgaacggctgtgtttacacaggtgga 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36951189 atggccatcaggagcaaagtatgagggcgaattctccgggagttatcttcatggtcacggcacattcacaaaatcgaacggctgtgtttacacaggtgga 36951288  T
Q  112 tggaggatgaatgctcatcacgggattggacgaaaagtgtattccaattcagatatttacgaaggtttatggaaagaaggaattcgcgaaggcagcggaa 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36951289 tggaggatgaatgctcatcacgggattggacgaaaagcgtattccaattcagatatttacgaaggtttatggaaagaaggaattcgcgaaggcagcggaa 36951388  T
Q  212 aatttacttggaatgatggaagtatctatattggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36951389 aatttacttggaatgatggaagtatctatattggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttga 36951488  T
Q  312 tggttgttggttaaatggacttagacaaggatctggagtttatagattctcagatggaggactttatattggaacatggagtaaaggcctaaaggacgga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36951489 tggttgttggttaaatggacttagacaaggatctggagtttatagattttcagatggaggactttatattggaacatggagtaaaggcctaaaggacgga 36951588  T
Q  412 aaagg 416  Q
    |||||    
T  36951589 aaagg 36951593  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 359
Target Start/End: Complemental strand, 34539165 - 34539042
Alignment:
Q  236 tctatattggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttag 335  Q
    |||||| |||||||||||||||| |||||| ||||||||  ||||||||||| |||  ||| |||||||||||| |||||||||||| ||||||||||||    
T  34539165 tctataatggaaattggaaaaaaaggaaaagagatggaaatgggattatgaattgggctaatggcgatgtttttaatggttgttggtcaaatggacttag 34539066  T
Q  336 acaaggatctggagtttatagatt 359  Q
    ||| || |||||||||||||||||    
T  34539065 acatggttctggagtttatagatt 34539042  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 217 - 358
Target Start/End: Complemental strand, 38454047 - 38453906
Alignment:
Q  217 acttggaatgatggaagtatctatattggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggtt 316  Q
    |||||||| |||||| ||||||| | |||||||||||||||||  |||| ||||||||| |||| |||||  |||  | | || ||||||||||||||||    
T  38454047 acttggaaggatggaggtatctacactggaaattggaaaaaagataaaagagatggaagagggactatgagttggcctgatggtgatgtttttgatggtt 38453948  T
Q  317 gttggttaaatggacttagacaaggatctggagtttatagat 358  Q
    |||||| |||| |||||  ||| |||| ||||||||||||||    
T  38453947 gttggtcaaatagacttgtacatggatatggagtttatagat 38453906  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 368
Target Start/End: Complemental strand, 34544914 - 34544782
Alignment:
Q  236 tctatattggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttag 335  Q
    |||| ||||| ||||||||||| |  ||||| |||||||| ||||||||||| ||| |||| || ||||||||  |||| ||||||| |||||||| |||    
T  34544914 tctacattggtaattggaaaaatgataaaatggatggaagagggattatgaattgggttaatggtgatgttttcaatggatgttggtcaaatggacatag 34544815  T
Q  336 acaaggatctggagtttatagattctcagatgg 368  Q
    ||| |||| ||||||||||||||| ||| ||||    
T  34544814 acatggatatggagtttatagattttcaaatgg 34544782  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 358
Target Start/End: Complemental strand, 34533994 - 34533880
Alignment:
Q  244 ggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaaggat 343  Q
    ||||||||| |||| |||||||||||||| |  ||||||||||| ||| || | || |||||||||||||||||||||| |||| |||||| | | ||||    
T  34533994 ggaaattgggaaaatgggaaaatagatgggaaagggattatgaattgggttgatggtgatgtttttgatggttgttggtcaaatagacttaaagatggat 34533895  T
Q  344 ctggagtttatagat 358  Q
     ||||||||||||||    
T  34533894 atggagtttatagat 34533880  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 415
Target Start/End: Complemental strand, 34548663 - 34548474
Alignment:
Q  228 tggaagtatctatattggaaattggaaaaaa--gggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaa 325  Q
    |||||||||||| | || |||||||||||||  ||||||||| ||||||| |||||||||| ||||  ||| || ||| |||| |||||| | |||| ||    
T  34548663 tggaagtatctacaatgaaaattggaaaaaaaagggaaaatatatggaagagggattatgatgtgggctaatggtgatattttcgatggtggctggtcaa 34548564  T
Q  326 atggacttagacaaggatctggagtttatagattctcagatggaggactttatattggaacatggagtaaaggcctaaaggacggaaaag 415  Q
    ||||| ||||||| |||| || |||||||| |||  ||  ||||  | ||||| |||| ||||||||| | |||| |||||||| |||||    
T  34548563 atggagttagacatggatttgaagtttatatatttgcaactggaaaagtttatgttgggacatggagtgagggccgaaaggacgaaaaag 34548474  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 359
Target Start/End: Complemental strand, 38453744 - 38453629
Alignment:
Q  244 ggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaaggat 343  Q
    |||||||||||| |||   |||| |||||||  ||||| ||||  |||  ||| || |||||||||||||||||||||| ||||||||||| ||| ||||    
T  38453744 ggaaattggaaagaagacgaaatggatggaacagggatcatgagttgggctaatggtgatgtttttgatggttgttggtcaaatggacttatacatggat 38453645  T
Q  344 ctggagtttatagatt 359  Q
    ||||||||| ||||||    
T  38453644 ctggagtttttagatt 38453629  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 358
Target Start/End: Original strand, 39848730 - 39848844
Alignment:
Q  244 ggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaaggat 343  Q
    ||||||||||||||||  ||||| |||||||  ||||||||||  ||| ||   || ||||| || ||||||||||||| ||||||||||| ||| ||||    
T  39848730 ggaaattggaaaaaagacaaaatggatggaacagggattatgagttgggttgttggtgatgtcttcgatggttgttggtcaaatggacttatacatggat 39848829  T
Q  344 ctggagtttatagat 358  Q
     ||||||||||||||    
T  39848830 atggagtttatagat 39848844  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 34533857 - 34533741
Alignment:
Q  243 tggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaagga 342  Q
    |||| ||||||||||||||  ||  |||||||  ||||||||||  |||  ||| || | |||||| ||||||||||||| ||||||||||||||| |||    
T  34533857 tggacattggaaaaaagggggaaatgatggaaaagggattatgagatgggctaatggtgttgttttcgatggttgttggtcaaatggacttagacatgga 34533758  T
Q  343 tctggagtttatagatt 359  Q
    | |||||||| ||||||    
T  34533757 tatggagtttgtagatt 34533741  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 34916282 - 34916166
Alignment:
Q  243 tggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaagga 342  Q
    |||||||||| |||||||| |||  |||||||  ||||||||||| |||  |||||| |||||||| ||||||| ||||| ||||||||  | ||| ||     
T  34916282 tggaaattgggaaaaaggggaaagggatggaaaagggattatgaaatgggctaacggtgatgttttcgatggttattggtcaaatggacagaaacatggc 34916183  T
Q  343 tctggagtttatagatt 359  Q
    | |||||||||||||||    
T  34916182 tatggagtttatagatt 34916166  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 34916558 - 34916442
Alignment:
Q  243 tggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaagga 342  Q
    |||||||||| |||||||| |||   ||||||  ||||||||||| |||  |||||  |||||||| ||||||| ||||| |||||||| || ||| |||    
T  34916558 tggaaattgggaaaaaggggaaaggcatggaaaagggattatgaaatgggctaacgatgatgttttcgatggttattggtcaaatggacataaacatgga 34916459  T
Q  343 tctggagtttatagatt 359  Q
    | |||||||||||||||    
T  34916458 tatggagtttatagatt 34916442  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 34549257 - 34549190
Alignment:
Q  301 gatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttatagattctcagatgg 368  Q
    ||||||||||||||||||||||  |||||||||| ||| |||| ||||||||||||||| ||| ||||    
T  34549257 gatgtttttgatggttgttggtctaatggacttacacatggatatggagtttatagattttcaaatgg 34549190  T

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Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 34533661 - 34533607
Alignment:
Q  301 gatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttata 355  Q
    |||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  34533661 gatgttttcgatggttgttggtaaaatggacttaaacatggatctggagtttata 34533607  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 39848649 - 39848707
Alignment:
Q  301 gatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttatagatt 359  Q
    ||||||||||||||||||  || ||||||||||||||| |||| |||||||||||||||    
T  39848649 gatgtttttgatggttgtatgtcaaatggacttagacatggatttggagtttatagatt 39848707  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 358
Target Start/End: Original strand, 38633019 - 38633132
Alignment:
Q  244 ggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaaggat 343  Q
    |||||||||||||| |  ||||| |||||||  ||||||||||  |||  ||  || ||||| || ||||||||||||| |||||| |||| ||| ||||    
T  38633019 ggaaattggaaaaa-gacaaaatggatggaatagggattatgacttgggctactggtgatgtcttcgatggttgttggtcaaatgggcttatacatggat 38633117  T
Q  344 ctggagtttatagat 358  Q
    |||||||||||||||    
T  38633118 ctggagtttatagat 38633132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 38632931 - 38632992
Alignment:
Q  294 taacggcgatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttata 355  Q
    |||||| |||||||||||||||| || || ||||||||||||| | |||| |||||||||||    
T  38632931 taacggtgatgtttttgatggttatttgtcaaatggacttagatatggatttggagtttata 38632992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 34916420 - 34916305
Alignment:
Q  243 tggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaagga 342  Q
    |||||||||| |||||||  |||  |||||||  ||||||||||| |||  ||| || | | |||| ||||||| ||||| ||||||||||  ||| |||    
T  34916420 tggaaattgggaaaaaggagaaaaggatggaaaagggattatgaattggggtaatggtgctattttcgatggttattggtcaaatggactttcacatgga 34916321  T
Q  343 tctggagtttatagat 358  Q
    | ||||||||||||||    
T  34916320 tatggagtttatagat 34916305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 34916662 - 34916581
Alignment:
Q  277 gggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttatagat 358  Q
    ||||||||||| |||  ||| || | | |||| ||||||||||||| ||||||||||  ||| |||| ||||||||||||||    
T  34916662 gggattatgaattggggtaatggtgctattttcgatggttgttggtcaaatggactttcacatggatatggagtttatagat 34916581  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 38632797 - 38632854
Alignment:
Q  301 gatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttatagat 358  Q
    ||||| || ||||||||||||| | ||||||||| ||| |||| ||||||||||||||    
T  38632797 gatgtcttcgatggttgttggtcagatggacttatacatggatttggagtttatagat 38632854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 359
Target Start/End: Complemental strand, 38453883 - 38453767
Alignment:
Q  243 tggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaagga 342  Q
    |||||||||||||  ||||| | | |||||||| |||||| |||| |||  |||||| |||   ||||||||||||  ||   ||||||||||||| |||    
T  38453883 tggaaattggaaagcagggagattggatggaagagggattttgaattggactaacggtgatcaatttgatggttgtctgtcgcatggacttagacatgga 38453784  T
Q  343 tctggagtttatagatt 359  Q
      |||||||||||||||    
T  38453783 cttggagtttatagatt 38453767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 44474588 - 44474704
Alignment:
Q  236 tctatattggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttag 335  Q
    ||||||| |||||||||||||| |  ||||| |||||||| ||||  ||||  |||  ||| || ||||||||||| ||||| |||| |||||||||||     
T  44474588 tctatatcggaaattggaaaaatgacaaaatggatggaagagggaccatgagttggactaatggtgatgtttttgaaggttgctggtcaaatggacttat 44474687  T
Q  336 acaaggatctggagttt 352  Q
    ||| |||||||||||||    
T  44474688 acatggatctggagttt 44474704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 355
Target Start/End: Original strand, 44474457 - 44474569
Alignment:
Q  243 tggaaattggaaaaaagggaaaatagatggaagggggattatgaagtggtttaacggcgatgtttttgatggttgttggttaaatggacttagacaagga 342  Q
    |||||||||||||| ||||||| | |||||||| |||| | |||| |||  ||| |  |||  |||| ||||||||  || |||||| |||||||| |||    
T  44474457 tggaaattggaaaacagggaaattggatggaagagggaatttgaattgggctaatgatgatcattttaatggttgtctgtcaaatgggcttagacatgga 44474556  T
Q  343 tctggagtttata 355  Q
    | |||||||||||    
T  44474557 tttggagtttata 44474569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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