View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9551_2D_low_1 (Length: 887)
Name: NF9551_2D_low_1
Description: NF9551_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_2D_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 827; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 1 - 871
Target Start/End: Original strand, 15709954 - 15710824
Alignment:
| Q |
1 |
cactcctcaaaccaacgaggcgccgtttataaagggcaaaaccgtgaagggcttccatccaaagcggacaatacctcggaacgcagtgtggcgtacttga |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15709954 |
cactcctcaaaccaacgaggcgccttttataaagggaaacaccgtgaagggcttacatccaaagcggacaatacctcggaacgcagtgtggcgtacttga |
15710053 |
T |
|
| Q |
101 |
gggtggaagggaacagtgattatgtttgagattttgaagattgaaaaagtatttcatcatgtgtttccatgcttggttttgagctgtgtcaacagtcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15710054 |
gggtggaagggaacagtgattatgtttgagattttgaagattgaaaaagtatttcatcatgtgtttccatgcttggttttgagctgtgtcaacagtcact |
15710153 |
T |
|
| Q |
201 |
ttatcaaaaagtaaagaagagtttgtttctcaaacaacatgtgattgttcaaagaagcaatcaatcgttactttatcaactcctgtaatgtggcctactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15710154 |
ttatcaaaaagtaaagaagagtttgtttctcaaacaacatgtgattgttcaaagaagcaatcaatcgttactttatcaactcctgtaatgtggcctactg |
15710253 |
T |
|
| Q |
301 |
caactggctcataatttgaaaagaaaatgaacaagttccaacctgtccctagaggaaaataaaagggctatttctgcagccaaagaaacactgaatgcct |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15710254 |
caactggctcataatttgaaaagaaaatgaacaagttccaacctgtccctagaggaaaataaaagggttatttctgcagccaaagaaacactgaatgcct |
15710353 |
T |
|
| Q |
401 |
ctcagagttgcattctttattttcaaaataaaacctatcattatccaaaactaaaataaagatgcacagcactaaagagagttgtttgaagctaacaaaa |
500 |
Q |
| |
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| T |
15710354 |
ctcagagttgcattctttattttcaaaataaaacctatcattatccaaaactaaaataaagatgcacaatactaaagagaattgtttgaagttaacaaaa |
15710453 |
T |
|
| Q |
501 |
tcgctttaactgttaacctattcaggaaacagaacttatggtggtcgatgcacttatatagacaagctactattttggagataacctataaactagaagc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15710454 |
tcgctttaactgttaacctattcaggaaacagaacttatggtggtcgatgcacttgtatagacaagctactattttggagataacctataaactagaagc |
15710553 |
T |
|
| Q |
601 |
taattcaaactacaacataagatcaactatctaggtataaaactagtaattgtaagttcgttaaccgagttatcagtataactttttgaagttgaatctt |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15710554 |
taattcaaactacaacataagatcaactatctaggtataaaactagtaattgtaagttcgttaaccgagttatcagtataactttttgaagttgaatctt |
15710653 |
T |
|
| Q |
701 |
catcattgaacattcttccgacagaaaaggctggttttttcggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttgg |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15710654 |
catcattgaacattcttccgacagaaaaggctggttttttcggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttgg |
15710753 |
T |
|
| Q |
801 |
tcgatctgcagcgtcttcctgcacacacaataaaccgatgtgtacgcacttcataacttcacttttgatgt |
871 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15710754 |
tcgatctgcagcgtcttcctgcacacacaataaaccgatgtgtacgcacttcataacttcactttcgatgt |
15710824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 711 - 865
Target Start/End: Original strand, 15696451 - 15696605
Alignment:
| Q |
711 |
cattcttccgacagaaaaggctggttttttcggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttggtcgatctgca |
810 |
Q |
| |
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||||||||| || ||||| || |||| || |||||||||| | ||||||||| ||||||||||| ||| | |||||||||||||||||||||||| |
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| T |
15696451 |
cattcttcctactgaaaatgccggttgcttgggttttggaatgggcattgtgtcactgcctagcatagcaacgaccgtggacatggttggtcgatctgca |
15696550 |
T |
|
| Q |
811 |
gcgtcttcctgcacacacaataaaccgatgtgtacgcacttcataacttcacttt |
865 |
Q |
| |
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|| |||| || |||||||||||||| ||||||| |||||||||||| ||||||| |
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| T |
15696551 |
gcatcttgttgtacacacaataaaccaatgtgtatgcacttcataacctcacttt |
15696605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 757 - 865
Target Start/End: Original strand, 15721790 - 15721898
Alignment:
| Q |
757 |
attgtgtcgctgcctagcatgagaacaatggtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaaccgatgtgtacgcacttcataa |
856 |
Q |
| |
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|||||||| || |||||||||| ||||| ||||||||| |||||||||||||| || ||||| || |||||||||||||| ||||||| ||| ||||| | |
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| T |
15721790 |
attgtgtcactacctagcatgacaacaacggtggacattgttggtcgatctgctgcatcttcttgtacacacaataaacctatgtgtatgcatttcatta |
15721889 |
T |
|
| Q |
857 |
cttcacttt |
865 |
Q |
| |
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||||||||| |
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|
| T |
15721890 |
cttcacttt |
15721898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 680 - 836
Target Start/End: Original strand, 15703020 - 15703176
Alignment:
| Q |
680 |
aactttttgaagttgaatcttcatcattgaacattcttccgacagaaaaggctggttttttcggttttggaaggaccattgtgtcgctgcctagcatgag |
779 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||| || ||||| |||| ||| | ||||| ||||| ||||||||| || ||||||||||| |
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| T |
15703020 |
aactttttgaatttgaatcttctaggtttgacattcttccaactgaaaatgctgctttcatgggtttcggaagaggcattgtgtcacttcctagcatgag |
15703119 |
T |
|
| Q |
780 |
aacaatggtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaacc |
836 |
Q |
| |
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||| | |||||||||||||||||||||||| || ||||| || | ||||||||||| |
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|
| T |
15703120 |
aacgacggtggacatggttggtcgatctgctgcatcttcttgtatgcacaataaacc |
15703176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 742 - 865
Target Start/End: Original strand, 15799039 - 15799162
Alignment:
| Q |
742 |
ggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaaccgatgt |
841 |
Q |
| |
|
||||| |||||| | | |||||| || ||||||||| |||||| ||||||||| |||||||||||||| || ||||| || ||||| | |||||| |||| |
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| T |
15799039 |
ggtttcggaaggtctactgtgtcactccctagcatgcgaacaacggtggacatcgttggtcgatctgctgcatcttcttgtacacaaagtaaaccaatgt |
15799138 |
T |
|
| Q |
842 |
gtacgcacttcataacttcacttt |
865 |
Q |
| |
|
||| ||||||| |||||||||| |
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| T |
15799139 |
gtatacacttcaagacttcacttt |
15799162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 742 - 865
Target Start/End: Original strand, 15804653 - 15804776
Alignment:
| Q |
742 |
ggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaaccgatgt |
841 |
Q |
| |
|
|||||||||||| | | ||| || || ||||||||| ||||| |||||||||||||||||||||||| || ||||| || ||||| | |||||| |||| |
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| T |
15804653 |
ggttttggaaggtctactgtctcactccctagcatgctaacaacggtggacatggttggtcgatctgctgcatcttcttgtacacaaagtaaaccaatgt |
15804752 |
T |
|
| Q |
842 |
gtacgcacttcataacttcacttt |
865 |
Q |
| |
|
||| ||||||| |||||||||| |
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|
| T |
15804753 |
gtatacacttcaagacttcacttt |
15804776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 742 - 863
Target Start/End: Original strand, 15812439 - 15812560
Alignment:
| Q |
742 |
ggttttggaaggaccattgtgtcgctgcctagcatgagaacaatggtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaaccgatgt |
841 |
Q |
| |
|
|||||||||||| | | |||||| || ||||||||| |||||| | ||||||| ||||| | |||||| |||||||| || || ||||||||||| |||| |
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| T |
15812439 |
ggttttggaaggtctactgtgtcactccctagcatgcgaacaacgatggacatcgttggcctatctgctgcgtcttcttgtacgcacaataaaccaatgt |
15812538 |
T |
|
| Q |
842 |
gtacgcacttcataacttcact |
863 |
Q |
| |
|
| | |||||||| |||||||| |
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| T |
15812539 |
gaatacacttcatgacttcact |
15812560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 865
Target Start/End: Original strand, 15763666 - 15763744
Alignment:
| Q |
787 |
gtggacatggttggtcgatctgcagcgtcttcctgcacacacaataaaccgatgtgtacgcacttcataacttcacttt |
865 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| || |||||||||||||| ||||||| ||||||| |||||||||| |
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|
| T |
15763666 |
gtggaaatggttggtcgatctgctgcatcttcttgtacacacaataaaccaatgtgtatacacttcaagacttcacttt |
15763744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 7739718 - 7739777
Alignment:
| Q |
344 |
tgtccctagaggaaaataaaagggctatttctgcagccaaagaaacactgaatgcctctc |
403 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||||| |||||||||| ||| |||| |
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|
| T |
7739718 |
tgtcactagaggaaaaggaaagggctatttcagcagccaaggaaacactgactgcgtctc |
7739777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9081457 - 9081351
Alignment:
| Q |
1 |
cactcctcaaaccaacgaggcgccgtttataaagggcaaaaccgtgaagggcttccatccaaagcggacaatacctcggaacgcagtgtggcgtacttga |
100 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| | |||||||||||| | ||| || |||||| ||||||||| | ||| || ||||||||||||||| |
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|
| T |
9081457 |
cactcctcaacccaacgaggcgcc-tttataatgcacaaaaccgtgaacgacttacacccaaagaggacaatacgttagaatgcggtgtggcgtacttga |
9081359 |
T |
|
| Q |
101 |
gggtggaa |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
9081358 |
gggtggaa |
9081351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 3422356 - 3422455
Alignment:
| Q |
21 |
cgccgtttataaagggcaaaaccgtgaagggcttccatccaaagcggacaatacctcggaacgcagtgtggcgtacttgagggtggaagggaacagtgat |
120 |
Q |
| |
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|||| |||||||||| ||||| |||||||| ||| || | ||| ||||||||||||| |||| || ||| | |||||||| |||||| |||||| |||| |
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| T |
3422356 |
cgccttttataaaggacaaaatcgtgaaggacttacacctaaaacggacaatacctcagaacacattgtaacatacttgagagtggaacggaacattgat |
3422455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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