View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_2D_low_16 (Length: 216)
Name: NF9551_2D_low_16
Description: NF9551_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_2D_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 4826702 - 4826595
Alignment:
| Q |
88 |
tattggtgtgcaaccaagtggagagatagagccaataatactaaatggtctttttgtgtggaaaattgaacgataggtactgatcatcaactagtagcaa |
187 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
4826702 |
tattggtgtgcaaacaagtggagagatagagccaataatactaaatggtcttgttgtgtggaaaatgaaaggataggtactgatcatcaacaagtagcaa |
4826603 |
T |
|
| Q |
188 |
atacatgg |
195 |
Q |
| |
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|||||||| |
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| T |
4826602 |
atacatgg |
4826595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 4856792 - 4856663
Alignment:
| Q |
71 |
ttttttcagctaaaccatattggtgtgcaaccaagtggagagatagagccaataatactaaatggtctttttgtgtggaaaattgaacgataggt----a |
166 |
Q |
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|||||||||||||||||| |||| |||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||| || ||||||| | |
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| T |
4856792 |
ttttttcagctaaaccat---ggtgggcaaacaagtggagagatagagccaatattactgaatggtcttgttgtgtggaaaattaaaggataggtaggga |
4856696 |
T |
|
| Q |
167 |
ctgatcatcaactagtagcaaatacatggaagg |
199 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
4856695 |
ctgatcatcaactagtagcaaatacatggaagg |
4856663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 4878527 - 4878398
Alignment:
| Q |
71 |
ttttttcagctaaaccatattggtgtgcaaccaagtggagagatagagccaataatactaaatggtctttttgtgtggaaaattgaacgataggt----a |
166 |
Q |
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|||||||||||||||||| |||| |||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||| || ||||||| | |
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| T |
4878527 |
ttttttcagctaaaccat---ggtgggcaaacaagtggagagatagagccaatattactgaatggtcttgttgtgtggaaaattaaaggataggtaggga |
4878431 |
T |
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| Q |
167 |
ctgatcatcaactagtagcaaatacatggaagg |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
4878430 |
ctgatcatcaactagtagcaaatacatggaagg |
4878398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 4837587 - 4837498
Alignment:
| Q |
102 |
caagtggagagatagagccaataatactaaatggtctttttgtgtggaaaattgaacgataggtactgatcatcaactagtagcaaatac |
191 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||| | |||||||||| |
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| T |
4837587 |
caagtggagagataaagccaataatactaaatggtcttgttgtgtggaaaatgaaaggatagctactgatcatcaataactagcaaatac |
4837498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 4842138 - 4842040
Alignment:
| Q |
104 |
agtggagagatagagccaataatactaaatggtctttttgtgtggaaaat----tgaacgataggtactgatcatcaactagtagcaaatacatggaag |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||| |||||||| | || ||||| || ||||||||||||||||||||||||||||||| |
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| T |
4842138 |
agtggaaagatagagccaataatactaaatggtcttgctgtatggaaaatgaaattaaggatagttaatgatcatcaactagtagcaaatacatggaag |
4842040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 4846185 - 4846056
Alignment:
| Q |
71 |
ttttttcagctaaaccatattggtgtgcaaccaagtggagagatagagccaataatactaaatggtctttttgtgtggaaaattgaacgatagg----ta |
166 |
Q |
| |
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||||||||||||||||| || || |||| |||||||||| |||||||||||| |||| ||||||||| |||||||||||||| || |||||| || |
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| T |
4846185 |
ttttttcagctaaaccacggtg-tgggcaaacaagtggagatatagagccaatattactgaatggtcttgttgtgtggaaaattaaaggataggtagcta |
4846087 |
T |
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| Q |
167 |
ctgatcatcaactagtagcaaatacatggaa |
197 |
Q |
| |
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| ||||||||||||| |||||||||||||| |
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| T |
4846086 |
ccaatcatcaactagttgcaaatacatggaa |
4846056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 4835452 - 4835390
Alignment:
| Q |
91 |
tggtgtgcaaccaagtggagagatagagccaataatactaaatggtctttttgtgtggaaaat |
153 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
4835452 |
tggtgtgcaaacaagcggagagataaagccaataatactaaatggtcttgttgtgtggaaaat |
4835390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 4843050 - 4842950
Alignment:
| Q |
102 |
caagtggagagatagagccaataatactaaa------tggtctttttgtgtggaaaattgaacgataggtactgatcatcaactagtagcaaatacatgg |
195 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||| |||| |||||||| || ||||| || |||||||||||||||||||||||||||| |
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| T |
4843050 |
caagtggagagatagagcaaataatactaaaaaaaaatggtctagttgtatggaaaatgaaaggatagttagtgatcatcaactagtagcaaatacatgg |
4842951 |
T |
|
| Q |
196 |
a |
196 |
Q |
| |
|
| |
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|
| T |
4842950 |
a |
4842950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 4868746 - 4868646
Alignment:
| Q |
102 |
caagtggagagatagagccaataatactaaa------tggtctttttgtgtggaaaattgaacgataggtactgatcatcaactagtagcaaatacatgg |
195 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| |||| |||||||| || ||||| || |||||||||||||||||||||||||||| |
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| T |
4868746 |
caagtggagagatagagcaaataatactaaaaaaaaatggtctagttgtatggaaaatgaaaggatagttagtgatcatcaactagtagcaaatacatgg |
4868647 |
T |
|
| Q |
196 |
a |
196 |
Q |
| |
|
| |
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| T |
4868646 |
a |
4868646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 4861033 - 4860974
Alignment:
| Q |
71 |
ttttttcagctaaaccatattggtgtgcaaccaagtggagagatagagccaataatactaaatg |
134 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4861033 |
ttttttcaggtaaaccat----gtgcgcaaacaagtggagagatagagccaataatactaaatg |
4860974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 4881040 - 4880981
Alignment:
| Q |
71 |
ttttttcagctaaaccatattggtgtgcaaccaagtggagagatagagccaataatactaaatg |
134 |
Q |
| |
|
||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4881040 |
ttttttcaggtaaaccat----gtgcgcaaacaagtggagagatagagccaataatactaaatg |
4880981 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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