View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_2D_low_2 (Length: 685)
Name: NF9551_2D_low_2
Description: NF9551_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_2D_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 10 - 668
Target Start/End: Original strand, 8139028 - 8139661
Alignment:
| Q |
10 |
attattcttccgtaacagttctaaagtttctgtggctctcatctaattgttt-atgtatgcactatcagttaatacatggctgactttggaatgatgtct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8139028 |
attattcttccgtaacagttctaaagtttctgtggctctcatctaattgttttatgtatgcactatcagttaatacatggctgactttggaattatgtct |
8139127 |
T |
|
| Q |
109 |
cagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8139128 |
cagttttgtataaatgatgaatctatgctttggaatgatggatgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaa |
8139227 |
T |
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| Q |
209 |
aatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgttgann |
308 |
Q |
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| T |
8139228 |
aatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttctatgaatgatgaatctgtgtttttgaagcgcatctgttgatt |
8139327 |
T |
|
| Q |
309 |
nnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatcatttac |
408 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8139328 |
tttttt---------tttagtctttgttactgaatgcatgcttgaatatcactgtttttggaatgatgtctctgctcttgtatgagtcttgatcatttag |
8139418 |
T |
|
| Q |
409 |
taatgtttcttgtgtgtaatttgacatcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaa |
508 |
Q |
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| T |
8139419 |
taatgtt-------------------tcttctctcatgcctttcgaccgtactcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaa |
8139499 |
T |
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| Q |
509 |
tcaaaactttatggaattcacatattcactcacaaccataaatgagttttaactctgattgttctaaca--ggtcgtcgctctctgggaacatcatggca |
606 |
Q |
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| T |
8139500 |
tcaaaactttatggaattcacatattcactcacaaccataaatgagttttaactctgattgttctaacagtggtcgtcgctctctgggaacatcatggca |
8139599 |
T |
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| Q |
607 |
agaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaataat |
668 |
Q |
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| T |
8139600 |
agaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaataat |
8139661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 204 - 454
Target Start/End: Complemental strand, 7499701 - 7499460
Alignment:
| Q |
204 |
gtaaaaatctttctcatttatttaaaaatcttgatcatttatttctgcaatcatgatcatttccatgaatgatgaatctgtgtttttgaagcgcatctgt |
303 |
Q |
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||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
7499701 |
gtaaaaatcttaatcatttatctaaaaatctttatcatttatttctgcaatcatgatcacttctatgaatgatgaatctgtgtttt-gaagctcatctgt |
7499603 |
T |
|
| Q |
304 |
tgannnnnnnnnnnnnnnnattgagtctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatca |
403 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
7499602 |
tgattttttttt--------ttgagtctttgttactgaatgcatgcttgaacatcactgtttttggaatgatgtttctgctcttttatgagtcttgatca |
7499511 |
T |
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| Q |
404 |
tttactaatgtttcttgtgtgtaatttgacatcttctctcatgcctttcga |
454 |
Q |
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| T |
7499510 |
tgtagtaatgtttcttgtgtgtaatttgacatcttctctcacgcctttcga |
7499460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 480 - 664
Target Start/End: Complemental strand, 7499230 - 7499040
Alignment:
| Q |
480 |
tatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatattcactcacaaccataaatgagttttaactctgattgttctaaca-- |
577 |
Q |
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| T |
7499230 |
tatgctaaatgaacaggtaaccttcaaaatcaaaactttatggaattcacatat----tcacaaccataaacgagtttttattctgattgttctaacagt |
7499135 |
T |
|
| Q |
578 |
ggtcgtcgctctc--------tgggaacatcatggcaagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaa |
664 |
Q |
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| T |
7499134 |
ggtcgtcgctctctgattgtgtgggaatatcatggcaagaacaagtgcagaagaaagttccgggtgggtaaagtggcatctaatgtcatggaaaa |
7499040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 7503107 - 7502967
Alignment:
| Q |
151 |
tgtctcagttttttatgtttcttgatcattaagtataaatcttaatcatttatgtaaaaatct---ttctcatttatttaaaaatcttgatcatttattt |
247 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| | | |||||||| ||||||| |||||||||||||| |
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| T |
7503107 |
tgtcccagttttttatgtttcttgatcattaagtaaaaatcctgatcatttatgtaaaaatatcattaatcatttatgtaaaaatattgatcatttattt |
7503008 |
T |
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| Q |
248 |
ctgcaatc--atgatcatttccatgaatgatgaatctgtgt |
286 |
Q |
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| T |
7503007 |
ctgcaatcatatgatcacttctatgaatgatgaatctgtgt |
7502967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 7499834 - 7499722
Alignment:
| Q |
10 |
attattcttccgtaacagttctaaagtttctgtggctctca-------tctaattgtttatgtatgcactatcagttaatacatggctgactttggaatg |
102 |
Q |
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|||||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||| ||| ||||| |
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| T |
7499834 |
attattcttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatgcactatctgttaatacatggctggttttagaatg |
7499735 |
T |
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| Q |
103 |
atgtctcagtttt |
115 |
Q |
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| T |
7499734 |
atgtctcagtttt |
7499722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 459 - 533
Target Start/End: Complemental strand, 7502297 - 7502223
Alignment:
| Q |
459 |
actcttttctggtgggagccctatgctcattgaacaggtaaccttcaaaatcaaaactttatggaattcacatat |
533 |
Q |
| |
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|||||||||||||| | |||||||| ||||||| |||||| ||||||||||| |||||||| |||||||||||| |
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| T |
7502297 |
actcttttctggtgagggccctatgtgcattgaagaggtaaacttcaaaatcagaactttattgaattcacatat |
7502223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 329 - 430
Target Start/End: Complemental strand, 7502928 - 7502831
Alignment:
| Q |
329 |
tctttgttactgaatgcatgcttgaatatcactgtttttggaacgatgtctctgctcttgtatgagtcttgatcatttactaatgtttcttgtgtgtaat |
428 |
Q |
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| T |
7502928 |
tctttgttactgattgcatgcttggatatcactgtttttggaatgatgtctat----tttttttagtcttgatcattcagtaatgtttcttatctgtaat |
7502833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 664
Target Start/End: Complemental strand, 7502172 - 7502114
Alignment:
| Q |
606 |
aagaacaagtgcagaagcaagtgccgggcagggaaagtcacatctagtgtcatggaaaa |
664 |
Q |
| |
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||||||||||||||||||||| || ||| |||||||| || ||||||||||||||||| |
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| T |
7502172 |
aagaacaagtgcagaagcaagcaccaggcggggaaagtgacgtctagtgtcatggaaaa |
7502114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 7503160 - 7503119
Alignment:
| Q |
244 |
atttctgcaatcatgatcatttccatgaatgatgaatctgtg |
285 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
7503160 |
atttctgcaatcatgatcacttctatgaatgatgaatttgtg |
7503119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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