View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9551_2D_low_4 (Length: 580)
Name: NF9551_2D_low_4
Description: NF9551_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_2D_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 19 - 569
Target Start/End: Complemental strand, 1164617 - 1164067
Alignment:
| Q |
19 |
cttgtgactgagtgtgaggtgaagttgcaacaggcctgttgagattccgatcatcgttccttaacatggggttgcttcttggagattgattgtttcccat |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164617 |
cttgtgactgagtgtgaggtgaaattgcaacaggcctgttgagattccgatcatcgttccttaacatggggttgcttcttggagattgattgtttcccat |
1164518 |
T |
|
| Q |
119 |
accacgacccatgctaccagcttgtgcttgagcctgcctctcttccacagcatctctgtgtacctcctcaattttctttggaccatcaactttcctcctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164517 |
accacgacccatgctaccagcttgtgcttgagcctgcctctcttccacagcatctctgtgtacctcctcaattttctttggaccatcaactttcctcctt |
1164418 |
T |
|
| Q |
219 |
acttgccatctattccttctcaaatcaattacgcccttcaacataaacctcaccatagaagatagattcatgttgtttgataatattttcaacttttgga |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1164417 |
acttgccatctattccttctcaaatcaattacgtccttcaacataaacctcaccatagaagatagattcatgttgtttgataatattttcaacttttcga |
1164318 |
T |
|
| Q |
319 |
aatatacatccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcagcttgcacagagcctcaacatcttcgtcatcaggata |
418 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1164317 |
aatatacacccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcagcttgcacagagcctcaacatcttcgtcatcaggata |
1164218 |
T |
|
| Q |
419 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
518 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1164217 |
ctcaacatcttcctcatcaggatactgaccctgacctattaacttctttatacactcatgcattatcctctctgtcaacattttcttcttatatagttct |
1164118 |
T |
|
| Q |
519 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttggttcatctc |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1164117 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttggttcttctc |
1164067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 83 - 417
Target Start/End: Original strand, 1814258 - 1814592
Alignment:
| Q |
83 |
catggggttgcttcttggagattgattgtttcccataccacgacccatgctaccagcttgtgcttgagcctgcctctcttccacagcatctctgtgtacc |
182 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
1814258 |
catggggttccttcttgcagattgattgtttcccataccacgacccgtcctaccaacttgtgcttgagcctgcctttcttgcacggcatctctgtgtacc |
1814357 |
T |
|
| Q |
183 |
tcctcaattttctttggaccatcaactttcctccttacttgccatctattccttctcaaatcaattacgcccttcaacataaacctcaccatagaagata |
282 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||| |
|
|
| T |
1814358 |
tcctcaatcttctttggaccatcaacttttctccttacttgccatctattccttctcaaatcaattacatccttcaacataaatcttaccctagaagata |
1814457 |
T |
|
| Q |
283 |
gattcatgttgtttgataatattttcaacttttggaaatatacatccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1814458 |
aattcatgttgtttgataatattttcaacctttcaaaatatacatccatatgttctttagctttgggatggtcaatcatctccccaatagtactcatcag |
1814557 |
T |
|
| Q |
383 |
cttgcacagagcctcaacatcttcgtcatcaggat |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
1814558 |
cttgcacagagcctcaacatcttcctcatcaggat |
1814592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 202 - 417
Target Start/End: Complemental strand, 1166331 - 1166116
Alignment:
| Q |
202 |
catcaactttcctccttacttgccatctattccttctcaaatcaattacgcccttcaacataaacctcaccatagaagatagattcatgttgtttgataa |
301 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||| || ||||||||||||||| |
|
|
| T |
1166331 |
catcaactttcctcattacttgccatctattccctctcaaatcaattacatctttcaacataaacctcaccctagaagataaatccatgttgtttgataa |
1166232 |
T |
|
| Q |
302 |
tattttcaacttttggaaatatacatccatatgttccttagttttgggatggtcaatcatctccccaataatactcatcagcttgcacagagcctcaaca |
401 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
1166231 |
tattttcaaactttcgaaatatacatccatatgttccttagctttggggtggtcaatcatctccccgatagaactcatcagcttgcacagagcctcaaca |
1166132 |
T |
|
| Q |
402 |
tcttcgtcatcaggat |
417 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
1166131 |
tctttctcatcaggat |
1166116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 419 - 569
Target Start/End: Original strand, 1814570 - 1814720
Alignment:
| Q |
419 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
1814570 |
ctcaacatcttcctcatcaggatcctgacactgacctagtaacttctttatgcactcgtgcattatcctctctgtcaacattttcttcttataaagttct |
1814669 |
T |
|
| Q |
519 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttggttcatctc |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
1814670 |
ccaatcaatctgatgtttcctaacatgcgccttcttgccttggttcttctc |
1814720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 419 - 569
Target Start/End: Complemental strand, 1166138 - 1165988
Alignment:
| Q |
419 |
ctcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttct |
518 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1166138 |
ctcaacatctttctcatcaggatcctgacacagacctggtaacttctttatacactcatgaattatcctctctgtcaacattttcttcttatatagttct |
1166039 |
T |
|
| Q |
519 |
ccaatcaatctgatgtttcctaacatgcgcattctttccttggttcatctc |
569 |
Q |
| |
|
||||| ||||||||||||||| |||||||| ||||| ||||||||| |||| |
|
|
| T |
1166038 |
ccaataaatctgatgtttcctgacatgcgccttcttgccttggttcttctc |
1165988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 1813755 - 1813804
Alignment:
| Q |
33 |
tgaggtgaagttgcaacaggcctgttgagattccgatcatcgttccttaa |
82 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
1813755 |
tgaggtgaagttgcaacaggcctatttagattccgatcatcattccttaa |
1813804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 167 - 417
Target Start/End: Complemental strand, 17254180 - 17253930
Alignment:
| Q |
167 |
agcatctctgtgtacctcctcaattttctttggaccatcaactttcctccttacttgccatctattccttctcaaatcaattacgcccttcaacataaac |
266 |
Q |
| |
|
|||||||| ||| ||||| ||||| ||||||||||| ||||| || |||||| ||||||| |||| ||||||||||||| | |||||||| ||| |
|
|
| T |
17254180 |
agcatctcggtgcacctcttcaatcttctttggaccttcaacctttctcctttgctgccatcgattctttctcaaatcaatggtatctttcaacatgaac |
17254081 |
T |
|
| Q |
267 |
ctcaccatagaagatagattcatgttgtttgataatattttcaacttttggaaatatacatccatatgttccttagttttgggatggtcaatcatctccc |
366 |
Q |
| |
|
|||| | ||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
17254080 |
ctcaacctagaagataagttcatgttgtttgataataatttaatcctttcaaaatatacatccatatgttccttggctttggggtggtcaatcatctccc |
17253981 |
T |
|
| Q |
367 |
caataatactcatcagcttgcacagagcctcaacatcttcgtcatcaggat |
417 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||| |||||| |||||||||| |
|
|
| T |
17253980 |
caatagtactcatcagtttgcacagagcttcaatatcttcttcatcaggat |
17253930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 420 - 532
Target Start/End: Complemental strand, 17253951 - 17253839
Alignment:
| Q |
420 |
tcaacatcttcctcatcaggatcctgacactgacctagcaacttctttatacactcatgcattatcctctctgacaacattttcttcttatatagttctc |
519 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||| || ||||| || || ||||| |||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
17253951 |
tcaatatcttcttcatcaggattctgacactgacccagtaactttttgatgcactcgtgcattatcctctctgtcagcattttcttcttatatagttctc |
17253852 |
T |
|
| Q |
520 |
caatcaatctgat |
532 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
17253851 |
caattaatctgat |
17253839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University