View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9551_2D_low_7 (Length: 507)

Name: NF9551_2D_low_7
Description: NF9551_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9551_2D_low_7
NF9551_2D_low_7
[»] chr8 (23 HSPs)
chr8 (258-356)||(32131402-32131500)
chr8 (287-345)||(13131421-13131479)
chr8 (287-344)||(16972395-16972452)
chr8 (287-356)||(19327858-19327926)
chr8 (285-356)||(4326239-4326310)
chr8 (301-356)||(28879063-28879118)
chr8 (286-356)||(34102712-34102783)
chr8 (301-356)||(35453415-35453470)
chr8 (300-346)||(13265488-13265534)
chr8 (262-343)||(1088917-1088998)
chr8 (287-356)||(31459037-31459106)
chr8 (301-346)||(34286599-34286644)
chr8 (293-341)||(11988194-11988242)
chr8 (301-345)||(32213059-32213103)
chr8 (312-356)||(35168467-35168511)
chr8 (301-356)||(32975692-32975747)
chr8 (301-356)||(34338426-34338481)
chr8 (287-340)||(7638514-7638567)
chr8 (287-356)||(16706126-16706195)
chr8 (287-356)||(16926758-16926827)
chr8 (300-356)||(1089017-1089073)
chr8 (320-356)||(23412758-23412794)
chr8 (301-341)||(29243104-29243144)
[»] chr4 (28 HSPs)
chr4 (270-343)||(29996678-29996751)
chr4 (264-338)||(29877607-29877681)
chr4 (271-356)||(948047-948132)
chr4 (264-337)||(18424322-18424395)
chr4 (264-356)||(3564188-3564280)
chr4 (264-356)||(23297406-23297498)
chr4 (287-356)||(27368178-27368247)
chr4 (260-356)||(35124351-35124447)
chr4 (264-356)||(43699509-43699601)
chr4 (300-356)||(55638107-55638163)
chr4 (264-355)||(43415316-43415407)
chr4 (288-345)||(8130480-8130537)
chr4 (264-356)||(33533896-33533988)
chr4 (301-356)||(896975-897030)
chr4 (291-346)||(12495682-12495737)
chr4 (301-356)||(28074370-28074425)
chr4 (287-344)||(42611905-42611963)
chr4 (301-346)||(7148777-7148822)
chr4 (268-337)||(43740120-43740189)
chr4 (264-340)||(34526248-34526323)
chr4 (264-340)||(38345863-38345939)
chr4 (285-356)||(35010200-35010271)
chr4 (287-345)||(38515689-38515747)
chr4 (287-356)||(212974-213042)
chr4 (312-356)||(4331353-4331397)
chr4 (264-332)||(10794959-10795027)
chr4 (264-332)||(10796354-10796422)
chr4 (300-356)||(46650275-46650331)
[»] chr7 (24 HSPs)
chr7 (264-355)||(38372526-38372617)
chr7 (291-356)||(34922926-34922991)
chr7 (268-341)||(21249128-21249201)
chr7 (264-356)||(30181518-30181610)
chr7 (292-356)||(41677370-41677434)
chr7 (261-356)||(24414488-24414583)
chr7 (287-343)||(12473197-12473253)
chr7 (287-355)||(23119947-23120015)
chr7 (264-356)||(29390576-29390668)
chr7 (301-356)||(42083443-42083498)
chr7 (290-356)||(7098126-7098192)
chr7 (287-356)||(44613499-44613568)
chr7 (287-356)||(48021673-48021742)
chr7 (258-356)||(14536844-14536942)
chr7 (287-346)||(23356527-23356586)
chr7 (301-356)||(29378650-29378705)
chr7 (258-324)||(22515565-22515631)
chr7 (286-356)||(39803014-39803084)
chr7 (301-343)||(47511048-47511090)
chr7 (315-356)||(14691325-14691366)
chr7 (301-346)||(33288135-33288180)
chr7 (287-343)||(9546423-9546479)
chr7 (300-356)||(22319317-22319373)
chr7 (264-356)||(40629443-40629534)
[»] chr5 (37 HSPs)
chr5 (269-356)||(42851995-42852082)
chr5 (261-356)||(11991270-11991365)
chr5 (274-356)||(22201962-22202044)
chr5 (287-356)||(29922215-29922284)
chr5 (269-337)||(17128251-17128319)
chr5 (264-356)||(6150349-6150437)
chr5 (287-356)||(2878702-2878771)
chr5 (287-356)||(10537245-10537314)
chr5 (279-356)||(12467247-12467324)
chr5 (287-356)||(43010626-43010695)
chr5 (264-356)||(1372019-1372111)
chr5 (260-340)||(14243787-14243867)
chr5 (295-346)||(1473355-1473406)
chr5 (264-355)||(3520530-3520620)
chr5 (260-343)||(42558759-42558841)
chr5 (262-356)||(2670041-2670135)
chr5 (301-355)||(41534628-41534682)
chr5 (289-346)||(7984098-7984155)
chr5 (287-356)||(12987040-12987109)
chr5 (287-356)||(13060628-13060697)
chr5 (287-356)||(22573644-22573713)
chr5 (307-356)||(24030226-24030275)
chr5 (264-356)||(1576599-1576690)
chr5 (264-356)||(1608125-1608216)
chr5 (264-344)||(11163307-11163387)
chr5 (287-343)||(26002988-26003044)
chr5 (301-356)||(17657247-17657302)
chr5 (301-356)||(28625485-28625540)
chr5 (301-356)||(40452504-40452559)
chr5 (301-356)||(42706801-42706856)
chr5 (312-346)||(31637130-31637164)
chr5 (279-356)||(40152902-40152979)
chr5 (307-356)||(43265967-43266016)
chr5 (287-356)||(43318994-43319063)
chr5 (312-356)||(1868862-1868906)
chr5 (269-337)||(27981957-27982025)
chr5 (288-356)||(30852163-30852231)
[»] chr2 (22 HSPs)
chr2 (287-356)||(34913416-34913485)
chr2 (279-356)||(21788440-21788517)
chr2 (287-356)||(33321338-33321407)
chr2 (260-356)||(25836738-25836834)
chr2 (288-356)||(37409635-37409703)
chr2 (261-356)||(4026891-4026985)
chr2 (269-356)||(33321429-33321516)
chr2 (300-345)||(29133704-29133749)
chr2 (266-346)||(4090459-4090539)
chr2 (260-356)||(37419990-37420085)
chr2 (312-356)||(42839346-42839390)
chr2 (301-356)||(887417-887472)
chr2 (287-338)||(27703502-27703553)
chr2 (307-346)||(35731149-35731188)
chr2 (290-356)||(5516069-5516135)
chr2 (314-356)||(12442831-12442873)
chr2 (287-337)||(15155804-15155854)
chr2 (322-356)||(33555685-33555719)
chr2 (264-355)||(38215991-38216078)
chr2 (287-356)||(8441464-8441533)
chr2 (263-356)||(35515506-35515599)
chr2 (287-343)||(755781-755837)
[»] chr3 (26 HSPs)
chr3 (264-356)||(21296734-21296826)
chr3 (269-356)||(40581103-40581190)
chr3 (287-356)||(7292671-7292740)
chr3 (287-356)||(11528882-11528951)
chr3 (264-356)||(22809219-22809312)
chr3 (264-356)||(29270329-29270421)
chr3 (264-356)||(34707739-34707831)
chr3 (264-356)||(53218066-53218158)
chr3 (288-356)||(32901174-32901242)
chr3 (292-356)||(43971873-43971937)
chr3 (264-338)||(10272090-10272164)
chr3 (287-356)||(10448765-10448834)
chr3 (307-356)||(10521165-10521214)
chr3 (307-356)||(10667409-10667458)
chr3 (293-346)||(24842143-24842196)
chr3 (307-356)||(52421167-52421216)
chr3 (264-343)||(5129916-5129995)
chr3 (301-356)||(43079960-43080015)
chr3 (301-356)||(52021251-52021306)
chr3 (293-343)||(36266241-36266291)
chr3 (307-356)||(3845866-3845915)
chr3 (264-333)||(23555452-23555521)
chr3 (279-356)||(27769629-27769705)
chr3 (293-341)||(4257342-4257390)
chr3 (300-356)||(5129841-5129897)
chr3 (300-356)||(30198982-30199038)
[»] chr6 (21 HSPs)
chr6 (290-356)||(30533974-30534040)
chr6 (301-356)||(10054386-10054441)
chr6 (287-343)||(2040225-2040281)
chr6 (301-356)||(2034255-2034310)
chr6 (285-356)||(4272371-4272442)
chr6 (293-356)||(22816611-22816674)
chr6 (290-356)||(3211027-3211093)
chr6 (260-345)||(9201768-9201853)
chr6 (287-356)||(29623503-29623572)
chr6 (315-356)||(34509931-34509972)
chr6 (307-346)||(1240647-1240686)
chr6 (301-356)||(2027202-2027257)
chr6 (301-356)||(12817118-12817173)
chr6 (258-356)||(8014751-8014848)
chr6 (287-356)||(6632650-6632719)
chr6 (287-356)||(6758618-6758687)
chr6 (301-346)||(10755316-10755361)
chr6 (287-343)||(2255725-2255781)
chr6 (312-356)||(7267791-7267835)
chr6 (264-324)||(10658304-10658364)
chr6 (264-356)||(24625819-24625911)
[»] chr1 (30 HSPs)
chr1 (259-356)||(18327487-18327584)
chr1 (264-356)||(1265719-1265811)
chr1 (287-356)||(10365162-10365231)
chr1 (287-356)||(10850097-10850166)
chr1 (287-356)||(20169255-20169324)
chr1 (264-356)||(10082218-10082310)
chr1 (264-356)||(37712036-37712127)
chr1 (279-354)||(49738328-49738404)
chr1 (301-356)||(6337782-6337837)
chr1 (260-356)||(28689966-28690064)
chr1 (264-352)||(391136-391225)
chr1 (307-356)||(4068126-4068175)
chr1 (260-356)||(26946130-26946227)
chr1 (269-346)||(35590103-35590180)
chr1 (287-356)||(35897649-35897718)
chr1 (312-356)||(15515373-15515417)
chr1 (264-340)||(16225477-16225553)
chr1 (290-346)||(41003381-41003437)
chr1 (312-356)||(41196736-41196780)
chr1 (293-356)||(26542970-26543033)
chr1 (301-356)||(36423007-36423062)
chr1 (293-356)||(46501027-46501090)
chr1 (301-356)||(51409733-51409788)
chr1 (318-356)||(39941463-39941501)
chr1 (260-356)||(1565408-1565502)
chr1 (287-356)||(15631895-15631964)
chr1 (307-356)||(26988159-26988208)
chr1 (307-343)||(16889004-16889040)
chr1 (264-356)||(19284864-19284956)
chr1 (287-335)||(46689597-46689645)
[»] scaffold0157 (1 HSPs)
scaffold0157 (291-346)||(24740-24795)
[»] scaffold0332 (1 HSPs)
scaffold0332 (307-356)||(14772-14821)
[»] scaffold1088 (1 HSPs)
scaffold1088 (268-356)||(1266-1354)
[»] scaffold0012 (1 HSPs)
scaffold0012 (294-341)||(178498-178545)
[»] scaffold0048 (1 HSPs)
scaffold0048 (307-356)||(58894-58943)
[»] scaffold1367 (1 HSPs)
scaffold1367 (287-343)||(1049-1105)


Alignment Details
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 258 - 356
Target Start/End: Original strand, 32131402 - 32131500
Alignment:
Q  258 gacccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||| ||||||||| ||||| | ||||||||||||  ||||| |||| |||||||||||||| ||||||| ||||||||||||  ||||||||    
T  32131402 gacccatttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgcattattcctaagtttgtcaaggtagtttat 32131500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 345
Target Start/End: Original strand, 13131421 - 13131479
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtca 345  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  13131421 ttatgcaaaacaaattatgcaaataaataagcttttatgtattattcataagtttgtca 13131479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 16972452 - 16972395
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtc 344  Q
    |||||||||||||||| || |||| ||||||||| |||||||||||||||||||||||    
T  16972452 ttatgcaaaacaatttttgcaaataaataagcttgtatgtattattcataagtttgtc 16972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 19327858 - 19327926
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||| ||| ||||||||    
T  19327858 ttatgcaaaacaacttatgcaaataaataaacttttatgtattattcataagtttgt-aatgtagtttat 19327926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 4326310 - 4326239
Alignment:
Q  285 gtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||||| |||| | |||| ||||||  |||||||||||||||||||||| | ||| ||||||||    
T  4326310 gtttatgcaaaacagtttagggaaataaataagtctttatgtattattcataagtttataaatgtagtttat 4326239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 28879063 - 28879118
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  28879063 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 28879118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 34102783 - 34102712
Alignment:
Q  286 tttatgcaaaacaatttatga-aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||| ||||||||  |||| |||||||||||||||||||||||| ||||| | ||| ||||||||    
T  34102783 tttatgcaaaataatttatgccaaataaataagcttttatgtattattcatgagtttttaaatgtagtttat 34102712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 35453415 - 35453470
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||||  ||||||||    
T  35453415 ttatgcaaataaataagcttttatgtattattcataagtttatcaaggtagtttat 35453470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 13265488 - 13265534
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||||    
T  13265488 tttatgcaaataaataagcttttatgtattattcataagcttgtcaa 13265534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 1088917 - 1088998
Alignment:
Q  262 catttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||||||||||||||| ||||  | ||||||||||||| ||||| |||  |||||| |||| |||||||| |||||| ||||    
T  1088917 catttgaattgacttatttttaagcttatgcaaaacaaattatgcaaacaaataagattttgtgtattatccataagcttgt 1088998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 31459037 - 31459106
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||| || |||||| |||| |||||  |||||| ||||||| |||||||||||||||||||||||    
T  31459037 ttatgaaaagcagtttatgtaaataaataaatttttatatattatttataagtttgtcaatatagtttat 31459106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 34286644 - 34286599
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||    
T  34286644 ttatgtaaataaataagcttttatgtattattcataagcttgtcaa 34286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 11988194 - 11988242
Alignment:
Q  293 aaaacaatttatgaaaatgaataagcttttatgtattattcataagttt 341  Q
    ||||||||||||| |||| |||||| |||||||||||||| ||||||||    
T  11988194 aaaacaatttatgcaaataaataagtttttatgtattatttataagttt 11988242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 32213103 - 32213059
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtca 345  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||||    
T  32213103 ttatgcaaataaataagcttttatgtattattcataagcttgtca 32213059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 35168511 - 35168467
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||    
T  35168511 aataagcttttatgtattattcataagcttgtcaaggtagtttat 35168467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 32975692 - 32975747
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||| ||||||||||||| |||||||  ||||||||    
T  32975692 ttatgcaaataaataagcttttatatattattcataagcttgtcaaggtagtttat 32975747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 34338481 - 34338426
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||| |||||||  |||||||| |||||||||||||||||||||||    
T  34338481 ttatgcaaataaatgagctttttggtattatttataagtttgtcaatatagtttat 34338426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 7638514 - 7638567
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtt 340  Q
    |||||||||||  |||||| |||| ||| ||||||||||||||||| |||||||    
T  7638514 ttatgcaaaactgtttatgcaaataaatcagcttttatgtattattaataagtt 7638567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 16706195 - 16706126
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||   ||||| |||| |||| | ||||||||||||||||||||||||  ||| ||||||||    
T  16706195 ttatgcaaaacggcttatgcaaataaatatgtttttatgtattattcataagtttgaaaatgtagtttat 16706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 16926827 - 16926758
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||| ||| | |||| ||||| |||| |||||||||| || ||||||| ||||||||||||    
T  16926827 ttatgtaaaacaacttaggtaaataaataaactttaatgtattattgattagtttgtaaatatagtttat 16926758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 1089017 - 1089073
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||| |||||| ||| |||||||||||||||| |||||||| || |||||    
T  1089017 tttatgcaaataaataagttttaatgtattattcataagcttgtcaatgtactttat 1089073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 23412758 - 23412794
Alignment:
Q  320 tttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||||||||  |||||||||||||||||    
T  23412758 tttatgtattattcataaacttgtcaatatagtttat 23412794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 29243144 - 29243104
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagttt 341  Q
    ||||| |||| ||||||||||||||||||||| ||||||||    
T  29243144 ttatgcaaataaataagcttttatgtattatttataagttt 29243104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 29996751 - 29996678
Alignment:
Q  270 ttgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||||||| ||||| |||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||    
T  29996751 ttgacttatttttgagtttttgcaaaacaatttatgcaaataaataagcttttatatattattcataagtttgt 29996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 29877607 - 29877681
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataag 338  Q
    |||| |||| |||| ||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  29877607 tttggattggcttatttttgagcttatgcaaaacaatttatgcaaataaataagcttttatgtattattcataag 29877681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 948047 - 948132
Alignment:
Q  271 tgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||  | |||||||||| |  |||||||||| |||||||||||||||||||||||||| ||||||||  ||||||||    
T  948047 tgacttactttttagcttatgcaaaatagcttatgaaaataaataagcttttatgtattattcataactttgtcaaggtagtttat 948132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 18424395 - 18424322
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataa 337  Q
    ||||||||||| || ||||| | ||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  18424395 tttgaattgacatatttttgagcttatgcaaaacaatttatacaaataaataagcttttatgtattattcataa 18424322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 3564188 - 3564280
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||  ||||| | ||||||||||||  |||||||||| ||||| ||||||| |||||||||||||||||||||  ||||||||    
T  3564188 tttggattgacttgtttttgagcttatgcaaaacagcttatgaaaataaataaacttttatatattattcataagtttgtcaaggtagtttat 3564280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 23297406 - 23297498
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| |||| ||||| | |||||||||| |  ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  23297406 tttggattggcttatttttgagcttatgcaaaatagcttatgcaaataaataagcttttatgtattattcataagtttgtcaaggtagtttat 23297498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 27368247 - 27368178
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  27368247 ttatgtaaaacaacttatgcaaataaataagcttttatatattattcataagtttgtcaatgtagcttat 27368178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 35124351 - 35124447
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| ||||||||| ||||| | ||||||||||||  ||||| ||||  |||| |||||||||| |||||||||| |||||||  ||||||||    
T  35124351 cccatttggattgacttatttttgagcttatgcaaaacagcttatgcaaatatataaccttttatgtactattcataagcttgtcaaggtagtttat 35124447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 43699601 - 43699509
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| |||| ||||| | ||||| ||||||| ||||  |||| ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  43699601 tttggattggcttatttttgagcttatgaaaaacaacttatacaaataaataagcttttatgtcttattcataagcttgtcaatgtagtttat 43699509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 55638163 - 55638107
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||    
T  55638163 tttatgcaaataaacaagcttttatgtattattcataagtttgtaaatatagtttat 55638107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 43415407 - 43415316
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagttta 355  Q
    |||||||||||||| ||||| | ||| | ||||||| || || |||| |||||| |||||||||||||||||||| |||| ||| |||||||    
T  43415407 tttgaattgacttatttttgagcttaagtaaaacaacttctgcaaataaataagtttttatgtattattcataaggttgttaatgtagttta 43415316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 8130480 - 8130537
Alignment:
Q  288 tatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtca 345  Q
    |||||||||||  ||||| |||| |||||||||||||| |||||||||||||||||||    
T  8130480 tatgcaaaacagcttatgcaaataaataagcttttatgcattattcataagtttgtca 8130537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 33533896 - 33533988
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||| |||||| |||||||| ||||| ||||  ||||||||  | |||||||||||||||| |||||  ||||||||    
T  33533896 tttggattgacttaattttgagtttatacaaaacaacttatgcaaatttataagcttcaaggtattattcataagttagtcaaggtagtttat 33533988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 896975 - 897030
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||| ||||||||||||||||||||| |||||||| ||||||||    
T  896975 ttatgcaaataaataaacttttatgtattattcataagcttgtcaatgtagtttat 897030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 12495737 - 12495682
Alignment:
Q  291 gcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||||||  ||||| |||| ||||||||||||||||||||||||||| |||||||    
T  12495737 gcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgtcaa 12495682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 28074370 - 28074425
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  28074370 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 28074425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 42611963 - 42611905
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttt-tatgtattattcataagtttgtc 344  Q
    ||||||||||||| ||||| |||| |||||||||| ||||||||||||||||| |||||    
T  42611963 ttatgcaaaacaacttatgcaaataaataagctttatatgtattattcataagcttgtc 42611905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 7148777 - 7148822
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||    
T  7148777 ttatgcaaataaataagcttttatgtattattcataagcttgtcaa 7148822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 337
Target Start/End: Complemental strand, 43740189 - 43740120
Alignment:
Q  268 aattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataa 337  Q
    |||||||||| ||||   ||||| ||||||||||||||||||| |||||| |||||  ||||||||||||    
T  43740189 aattgacttatttttaaatttatacaaaacaatttatgaaaataaataagtttttacatattattcataa 43740120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 34526248 - 34526323
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtt 340  Q
    |||||||||||||||||| | | ||||| |||| | |||||| |||| ||||||||||||||| | |||||||||||    
T  34526248 tttgaattgacttactttcgagcttatgaaaaatagtttatgcaaataaataagcttttatgt-taattcataagtt 34526323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 38345939 - 38345863
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtt 340  Q
    |||| |||||||||  |||| | ||||||||||||  ||||  |||| |||||||||||||||| ||||||||||||    
T  38345939 tttggattgacttatgtttgagcttatgcaaaacagcttatccaaataaataagcttttatgtagtattcataagtt 38345863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 35010200 - 35010271
Alignment:
Q  285 gtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||| |||| ||| || | |||| |||||| |||||||||||||| |||||||||||||  ||||||||    
T  35010200 gtttatggaaaataatataggtaaataaataagtttttatgtattatttataagtttgtcaacgtagtttat 35010271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 38515747 - 38515689
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtca 345  Q
    |||||||||||| ||||||  ||| ||||||| | ||||||||||||||||| ||||||    
T  38515747 ttatgcaaaacagtttatgggaataaataagcctctatgtattattcataagcttgtca 38515689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 213042 - 212974
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| |||||| |||||| ||||||||||||| |||| ||  ||||||||    
T  213042 ttatgcaaaacaacttatgcaaataaataag-ttttatttattattcataagcttgttaaggtagtttat 212974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 4331353 - 4331397
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| |||||||||||| ||||||||  ||||||||    
T  4331353 aataagcttttatttattattcataactttgtcaaggtagtttat 4331397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 10795027 - 10794959
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattatt 332  Q
    |||||||||||||| ||| | | ||||||||||||  || || |||| |||||| ||||||||||||||    
T  10795027 tttgaattgacttattttagagcttatgcaaaacagcttgtgtaaataaataagtttttatgtattatt 10794959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 10796354 - 10796422
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattatt 332  Q
    ||||||||| |||| ||| | | ||||||||||||| || || |||| |||||| ||||||||||||||    
T  10796354 tttgaattggcttattttagagcttatgcaaaacaacttgtgtaaataaataagtttttatgtattatt 10796422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 46650275 - 46650331
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||| | | ||||||||    
T  46650275 tttatgcaaataaataagctttcatgtattattcataaatttgtaattgtagtttat 46650331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 38372526 - 38372617
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagttta 355  Q
    |||| ||||||||| ||||| | ||||||||||||  ||||| |||| |||||||| ||||||||||||||||||||||||||  |||||||    
T  38372526 tttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagctcttatgtattattcataagtttgtcaaggtagttta 38372617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 34922926 - 34922991
Alignment:
Q  291 gcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  34922926 gcaaaacaacttatgcaaataaataagcttttatgtattattcataagtttgtcaaggtagtttat 34922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 21249128 - 21249201
Alignment:
Q  268 aattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagttt 341  Q
    |||| ||||| ||||| ||||||||||||| | ||||| |||| |||||| |||||||||||||||||||||||    
T  21249128 aattaacttatttttgcgtttatgcaaaactacttatgcaaataaataagtttttatgtattattcataagttt 21249201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 30181518 - 30181610
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||| | |||||||| |||| ||| | |||| || |||||||||||||||||||||||| |||||||  ||||||||    
T  30181518 tttggattgacttatttttgagcttatgcaatacaacttaggcaaataaagaagcttttatgtattattcataagcttgtcaaggtagtttat 30181610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 41677370 - 41677434
Alignment:
Q  292 caaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| ||||| |||| |||||  ||||||||||||||||||||||||||||| ||||||||    
T  41677370 caaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaatgtagtttat 41677434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 24414488 - 24414583
Alignment:
Q  261 ccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||||| || || || | |||||||||| |||||||| |||| ||||| | |||||||||||| |||||| ||||||| |||| ||||    
T  24414488 ccatttgaattgacgtatttatgaggttatgcaaaaaaatttatgtaaataaataaacatttatgtattatccataagcttgtcaagatagcttat 24414583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 12473197 - 12473253
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    ||||||||||||| ||||| |||  |||||| |||||||||||||||||||||||||    
T  12473197 ttatgcaaaacaacttatgcaaacaaataagtttttatgtattattcataagtttgt 12473253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 23120015 - 23119947
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagttta 355  Q
    |||||||||||||  |||| |||| ||||| |||| | ||||||||||||||||||||||| |||||||    
T  23120015 ttatgcaaaacaacctatgcaaataaataatctttaaagtattattcataagtttgtcaatgtagttta 23119947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 29390668 - 29390576
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| |||| ||||| ||||||| ||||||| ||||| |||| ||||| |||| |||||||||||||||| |||| ||  ||||||||    
T  29390668 tttggattggcttatttttgagtttatggaaaacaacttatgcaaataaataatctttgatgtattattcataagcttgtaaaggtagtttat 29390576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 42083498 - 42083443
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||| ||||||||||||||||||||||||| |||||| |||||    
T  42083498 ttatgtaaataaataagtttttatgtattattcataagtttgtaaatataatttat 42083443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 7098192 - 7098126
Alignment:
Q  290 tgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||| | |||||  |||| |||||| ||||||| |||||||||||||||||||| |||||||||    
T  7098192 tgcaaaatagtttatacaaataaataagattttatgaattattcataagtttgtcaagatagtttat 7098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 44613568 - 44613499
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||  ||||| |||| ||||||||||||| ||||||||||||| |||| ||  ||||||||    
T  44613568 ttatgcaaaacagcttatgcaaataaataagcttttatttattattcataagcttgttaaggtagtttat 44613499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 48021742 - 48021673
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||||||||||||| |||| |||||||| |||| ||||||||||||| |||| ||  ||||||||    
T  48021742 ttatacaaaacaatttatgcaaataaataagctcttatttattattcataagcttgttaaagtagtttat 48021673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 356
Target Start/End: Original strand, 14536844 - 14536942
Alignment:
Q  258 gacccatttgaatt-gacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||| ||| |||||| |||||  |||||  ||||||| ||||  |||| |||||  |||||||||||||||||||| ||||||| |||||||||    
T  14536844 gacccatttggatttgacttatttttgaatttattaaaaacaacttatagaaataaataat-ttttatgtattattcataagattgtcaagatagtttat 14536942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 23356586 - 23356527
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    |||| |||||||| |||||||||| ||||||  ||| ||||||||||| |||||||||||    
T  23356586 ttatacaaaacaacttatgaaaataaataaggctttttgtattattcacaagtttgtcaa 23356527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 29378650 - 29378705
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||||||||||| || ||||||||||  ||||||||    
T  29378650 ttatgcaaataaataagcttttatgtattatttatgagtttgtcaaggtagtttat 29378705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 22515631 - 22515565
Alignment:
Q  258 gacccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttat 324  Q
    |||||||||| |||||||||  |||| | |||||||||| |  |||||||||| |||||||||||||    
T  22515631 gacccatttggattgacttatatttgagcttatgcaaaatatattatgaaaataaataagcttttat 22515565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 39803014 - 39803084
Alignment:
Q  286 tttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||| || |||||||||| ||| ||||||| | |||| || ||||||||||||| || ||||||    
T  39803014 tttatgcaaaataaattatgaaaataaatgagcttttttctattgtttataagtttgtcaacattgtttat 39803084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 47511048 - 47511090
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||    
T  47511048 ttatgcaaataaataagcttttatgtattattcataagcttgt 47511090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 14691366 - 14691325
Alignment:
Q  315 aagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||||||||||||||| |||||||| || |||||    
T  14691366 aagcttttatgtattattcataagcttgtcaatgtaatttat 14691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 33288180 - 33288135
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||| |||| |||||||||||||||||||||||| || |||||||    
T  33288180 ttatgcaaataaataagcttttatgtattattcattagcttgtcaa 33288135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 9546479 - 9546423
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    ||||| |||| |||||||| |||| |||||  ||||||||||||||||||| |||||    
T  9546479 ttatgtaaaataatttatgcaaataaataaagttttatgtattattcataaatttgt 9546423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 22319373 - 22319317
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||| ||||| | || ||||||||||||||||||||| || |||||||||    
T  22319373 tttatgcaaataaataaacattaatgtattattcataagtttgttaacatagtttat 22319317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 40629534 - 40629443
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| |||| ||||| | ||||||||||||  ||||  |||| ||||| |||| |||||||||||||||| |||||||  ||||||||    
T  40629534 tttggattggcttatttttgagcttatgcaaaacagcttatccaaataaataaacttt-atgtattattcataagcttgtcaaggtagtttat 40629443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 356
Target Start/End: Original strand, 42851995 - 42852082
Alignment:
Q  269 attgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| ||||||| ||||||||||||  ||||  |||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  42851995 attggcttatttttgggcttatgcaaaacagcttattcaaataaataagcttttatgtattattcataagcttgtcaagatagtttat 42852082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 11991270 - 11991365
Alignment:
Q  261 ccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||| ||||||||| |||   | ||||||||||||| ||||| |||| ||||||||||||||||||||| ||||| |||| ||||| ||||||    
T  11991270 ccatttggattgacttattttaatgcttatgcaaaacaacttatgtaaataaataagcttttatgtattatttataagcttgtaaatatggtttat 11991365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 356
Target Start/End: Complemental strand, 22202044 - 22201962
Alignment:
Q  274 cttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||| | ||||||||||||  ||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  22202044 cttatttttgagcttatgcaaaacagcttatgtaaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 22201962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 29922284 - 29922215
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||| |||||| |||| |||||| |||||||||||||||||||| |||||||  ||||||||    
T  29922284 ttatgcaaaacagtttatgcaaataaataagtttttatgtattattcataagcttgtcaaggtagtttat 29922215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 17128251 - 17128319
Alignment:
Q  269 attgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataa 337  Q
    ||||||||| ||||| | ||||||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  17128251 attgacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataa 17128319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 6150349 - 6150437
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| ||||| ||||| ||||||||||||||  ||||| ||||||    | ||||||||||||||||||||||||||||  ||||||||    
T  6150349 tttgaattcacttatttttgagtttatgcaaaacagcttatgcaaatga----ggttttatgtattattcataagtttgtcaaggtagtttat 6150437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 2878771 - 2878702
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||||  ||||| |||| ||||||||||||| |||||||||||||||||||||| | ||||||    
T  2878771 ttatgctaaacagcttatgcaaataaataagcttttatctattattcataagtttgtcaatgtggtttat 2878702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 10537314 - 10537245
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||  ||||| |||| ||||||||||||||||||||| ||||| ||||||| |||||||||    
T  10537314 ttatgtaaaacagcttatgcaaataaataagcttttatgtattatttataagcttgtcaagatagtttat 10537245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 12467247 - 12467324
Alignment:
Q  279 ttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||||| ||||| |  ||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  12467247 ttttgagtttattcaaaaaatgttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 12467324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 43010626 - 43010695
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||| ||||| |||| ||||| ||||||||||||||||||| |||||||| | ||||||||    
T  43010626 ttatgtaaaacaacttatgtaaataaataaacttttatgtattattcatacgtttgtcattgtagtttat 43010695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 1372111 - 1372019
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||| | |||||||||||| |||||| |||| ||||  ||||||||||||||| ||||| |||| ||| | ||||||    
T  1372111 tttggattgacttatttttgagcttatgcaaaacagtttatgtaaataaatacacttttatgtattatttataagcttgtaaatgtggtttat 1372019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 14243787 - 14243867
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtt 340  Q
    |||| ||| ||||||||| ||||| | ||||||||||||  ||||| |||| ||||||||| |||||| ||||||||||||    
T  14243787 cccacttggattgacttatttttgagattatgcaaaacagcttatgtaaataaataagcttctatgtaatattcataagtt 14243867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 1473355 - 1473406
Alignment:
Q  295 aacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||| |||||||    
T  1473355 aacaacttatgcaaataaataagcttttatgtattattcataagcttgtcaa 1473406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 3520620 - 3520530
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagttta 355  Q
    |||| ||||||||| ||||  | |||||||||||| |||||| |||| ||||| |||||| |||||||||||||| |||||||  |||||||    
T  3520620 tttggattgacttattttttagcttatgcaaaacagtttatgtaaataaataacctttta-gtattattcataagcttgtcaaggtagttta 3520530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 42558841 - 42558759
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||||||| ||||||||| |||||| || ||||||||||  |||||  ||| |||||||||||| ||| |||||||||||||||    
T  42558841 cccatttggattgacttatttttggatt-atgcaaaacagcttatgtgaataaataagcttttacgtactattcataagtttgt 42558759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 356
Target Start/End: Original strand, 2670041 - 2670135
Alignment:
Q  262 catttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||  |||  ||||| | ||||| |||||| |||||| |||| || || |||||||||| ||||||||||||||||||  ||||||||    
T  2670041 catttgaattcgcttgtttttgagcttatgtaaaacagtttatgcaaataaacaatcttttatgtactattcataagtttgtcaaggtagtttat 2670135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 41534628 - 41534682
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagttta 355  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||  |||||||    
T  41534628 ttatgcaaataaataagcttttatgtattattcataagcttgtcaaggtagttta 41534682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 7984098 - 7984155
Alignment:
Q  289 atgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||| ||||| ||||| |||| | |||| ||||||||||||||||||||||||||||    
T  7984098 atgcataacaacttatgcaaataactaagtttttatgtattattcataagtttgtcaa 7984155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 12987109 - 12987040
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| || ||||| |||| |||||||||||||||||| |||||||| |||||||  ||||||||    
T  12987109 ttatgtaaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttat 12987040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 13060697 - 13060628
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| || ||||| |||| |||||||||||||||||| |||||||| |||||||  ||||||||    
T  13060697 ttatgtaaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgtcaaggtagtttat 13060628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 22573644 - 22573713
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| ||| || |||| ||||||||| |||||||||| ||| ||||||||    
T  22573644 ttatgcaaaacaacttatgcaaataaatgagtttttttgtattatttataagtttgtaaatgtagtttat 22573713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 24030226 - 24030275
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  24030226 aaataaataagcttttatgtattattcataagcttgtcaaagtagtttat 24030275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 1576599 - 1576690
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| |||| | ||||| ||||||||||||  ||| | |||| ||||| |||||||||||| |||||||| |||||||| ||||||||    
T  1576599 tttggattggcttattcttgggcttatgcaaaacagcttaagcaaataaataaacttttatgtatt-ttcataagcttgtcaatgtagtttat 1576690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 1608216 - 1608125
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| |||| | ||||| ||||||||||||  ||| | |||| ||||| |||||||||||| |||||||| |||||||| ||||||||    
T  1608216 tttggattggcttattcttgggcttatgcaaaacagcttaagcaaataaataaacttttatgtatt-ttcataagcttgtcaatgtagtttat 1608125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 11163387 - 11163307
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtc 344  Q
    |||| ||||||||| ||||  | ||||||||||||  ||||| |||| |||||| |||||||||| ||||||||| |||||    
T  11163387 tttggattgacttattttttagcttatgcaaaacagcttatgtaaatcaataagtttttatgtatgattcataagcttgtc 11163307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 26002988 - 26003044
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||| ||||||| |||||| |||| |||||| |||||||||||||| ||||||||||    
T  26002988 ttatacaaaacagtttatgcaaataaataagtttttatgtattatttataagtttgt 26003044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 17657247 - 17657302
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||||||||||||||||| ||| || | ||||||||    
T  17657247 ttatgcaaataaataagcttttatgtattattcataagcttgccattgtagtttat 17657302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 28625485 - 28625540
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||||||||| |||||||||||||| |||||||  ||||||||    
T  28625485 ttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttat 28625540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 40452559 - 40452504
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||| ||||||||||||||| |||||||||||| |||||||  ||||||||    
T  40452559 ttatgcaaaggaataagcttttatgcattattcataagcttgtcaaggtagtttat 40452504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 42706801 - 42706856
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||||||||| |||||||||||||| |||||||  ||||||||    
T  42706801 ttatgcaaataaataagcttttaagtattattcataagcttgtcaaggtagtttat 42706856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 346
Target Start/End: Complemental strand, 31637164 - 31637130
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||||||||||||||||||||||||| |||||||    
T  31637164 aataagcttttatgtattattcataagcttgtcaa 31637130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 40152979 - 40152902
Alignment:
Q  279 ttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||  ||||||||||||  |||| |||||| |||||| |||||| ||||| ||||| || |||||||||    
T  40152979 ttttgagtttatctaaaacaatttatataaataaataagtttttatttattatccataaatttgttaagatagtttat 40152902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 43266016 - 43265967
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||||||||||| ||||||||| |||| || |||||||||    
T  43266016 aaataaataagcttttatgtatcattcataagcttgttaagatagtttat 43265967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 43318994 - 43319063
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| |||| |  ||||||||||||| ||||| |||| ||| ||||||||    
T  43318994 ttatgcaaaacaacttatgcaaataaatatgtctttatgtattatttataagcttgttaatgtagtttat 43319063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 1868862 - 1868906
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||||||||||||| ||| |||||||  ||||||||    
T  1868862 aataagcttttatgtattattcacaagcttgtcaaggtagtttat 1868906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 27982025 - 27981957
Alignment:
Q  269 attgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataa 337  Q
    ||||||||| |||||   |||| |||||||  |||||||||| |||||  |||||||||||||||||||    
T  27982025 attgacttatttttgaacttatacaaaacatcttatgaaaataaataaatttttatgtattattcataa 27981957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 30852163 - 30852231
Alignment:
Q  288 tatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||  ||||| |||| ||||| ||||||||||||||| ||||||| || ||| ||||||||    
T  30852163 tatgtaaaacagattatgcaaataaataaacttttatgtattattaataagttcgtaaatgtagtttat 30852231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 34913485 - 34913416
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||  ||||| |||| |||||||||||||||||||||||||||||||| || |||||||||    
T  34913485 ttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgttaagatagtttat 34913416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 21788440 - 21788517
Alignment:
Q  279 ttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||||||||||  ||||| |||| ||||||||||||| ||||||||||||| |||| || |||||||||    
T  21788440 ttttgagtttatgcaaaacatcttatgcaaataaataagcttttatttattattcataagcttgttaagatagtttat 21788517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 33321407 - 33321338
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| || || |||| ||||||||||||||| ||||||||||| |||||||  ||||||||    
T  33321407 ttatgcaaaacaacttgtgcaaataaataagcttttatgtcttattcataagcttgtcaaggtagtttat 33321338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 356
Target Start/End: Complemental strand, 25836834 - 25836738
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| |||| ||||| |  |  ||||||||  ||||| |||| |||| |||||||||||||||||||||| |||||||  ||||||||    
T  25836834 cccatttgaattgccttatttttgagcctgcgcaaaacagcttatgcaaataaatatgcttttatgtattattcataagcttgtcaaggtagtttat 25836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 37409635 - 37409703
Alignment:
Q  288 tatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||| ||||| |||| |||||||||||| |||||||||   ||||||||||| ||||||||    
T  37409635 tatgcaaaacaacttatgcaaataaataagcttttaagtattattctctagtttgtcaatgtagtttat 37409703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 4026891 - 4026985
Alignment:
Q  261 ccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| ||| |||| ||||| | |||||||||||   ||||| |||| ||||||||||||||||||| ||||||| |||||||  ||||||||    
T  4026891 ccatttgatttggcttatttttgagcttatgcaaaactgcttatgcaaataaataagcttttatgtatta-tcataagcttgtcaaggtagtttat 4026985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 33321516 - 33321429
Alignment:
Q  269 attgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||| ||||  | ||||||||||||| ||||| |||| | |||| |||||||||||| ||||||| |||||||  ||||||||    
T  33321516 attgacttattttttagcttatgcaaaacaacttatgcaaataattaagtttttatgtattactcataagcttgtcaaggtagtttat 33321429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 29133749 - 29133704
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtca 345  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||    
T  29133749 tttatgcaaataaataatcttttatgtattattcataagtttgtca 29133704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 4090459 - 4090539
Alignment:
Q  266 tgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||||| |||| ||||| | ||||||||||||  ||||| |||| ||||| |||| |||||||||||||||  |||||||    
T  4090459 tgaattggcttatttttgagcttatgcaaaacagcttatgcaaataaataaactttgatgtattattcataatcttgtcaa 4090539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 356
Target Start/End: Complemental strand, 37420085 - 37419990
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| |||| |||| ||||  | ||||| |||| |||||||| |||| ||||||||||||||| | |||||||| ||||||||  ||||||||    
T  37420085 cccatttggattggcttattttttagcttatgaaaaataatttatgcaaataaataagcttttatgt-taattcataattttgtcaaggtagtttat 37419990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 42839390 - 42839346
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| ||||||||||||||||||||||||||||  ||||||||    
T  42839390 aataagtttttatgtattattcataagtttgtcaagttagtttat 42839346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 887417 - 887472
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||| ||||||||||||||| |||||||  ||||||||    
T  887417 ttatgcaaataaataagcttttttgtattattcataagcttgtcaaggtagtttat 887472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 27703553 - 27703502
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataag 338  Q
    ||||||||||||  ||||| |||| ||||||||||||| |||||||||||||    
T  27703553 ttatgcaaaacagcttatgcaaataaataagcttttatatattattcataag 27703502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 35731149 - 35731188
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  35731149 aaataaataagcttttatgtattattcatgagtttgtcaa 35731188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 5516069 - 5516135
Alignment:
Q  290 tgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||  ||||| |||  ||||||||| ||||| |||||||||||||||| ||| ||||||||    
T  5516069 tgcaaaacagcttatgtaaaaaaataagcttctatgtgttattcataagtttgtaaatgtagtttat 5516135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 12442831 - 12442873
Alignment:
Q  314 taagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||| |||||||||||||| ||||||| |||||||||    
T  12442831 taagcttttaggtattattcataagcttgtcaagatagtttat 12442873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 15155804 - 15155854
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataa 337  Q
    ||||| ||||||| |||||||||| |||| |||||||||||||||| ||||    
T  15155804 ttatgtaaaacaacttatgaaaataaatatgcttttatgtattatttataa 15155854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 33555685 - 33555719
Alignment:
Q  322 tatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||||||||||||| ||||||||||||    
T  33555685 tatgtattattcataagtttgtaaatatagtttat 33555719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 38215991 - 38216078
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagttta 355  Q
    |||| ||||||||| ||||| | ||||||||||||  ||||| |||| |||||    |||||||||||||||||| |||||||  |||||||    
T  38215991 tttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataa----ttatgtattattcataagcttgtcaaggtagttta 38216078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 8441464 - 8441533
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||| ||  ||||| |||| |||| | |||||||||||||| |||||||||| ||| ||||||||    
T  8441464 ttatgcaaagcagcttatgcaaataaatatgtttttatgtattatttataagtttgttaatgtagtttat 8441533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 356
Target Start/End: Complemental strand, 35515599 - 35515506
Alignment:
Q  263 atttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||| |||| ||| | | ||||| |||||| |||| | |||| |||| |  ||||||||||||| |||||||||| ||| ||||||||    
T  35515599 atttgaattggcttattttagagcttatgtaaaacagtttacgtaaataaatatgtctttatgtattatttataagtttgttaatgtagtttat 35515506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 755837 - 755781
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    ||||||||||||| ||| | |||| | ||||||||||||||||||||| ||| ||||    
T  755837 ttatgcaaaacaacttacgcaaataattaagcttttatgtattattcagaagcttgt 755781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 21296734 - 21296826
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||| | ||||||||||||||||||| |||| |||||| |||||| ||||||||||| |||| ||||  ||||||||    
T  21296734 tttggattgacttatttttgagattatgcaaaacaatttatgcaaataaataagtttttatctattattcatacgtttatcaaggtagtttat 21296826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 40581190 - 40581103
Alignment:
Q  269 attgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||  |||| | ||||||||||||| ||||| |||| ||||||||||||||||||||| ||||| |||||||  ||||||||    
T  40581190 attgacttatctttgagcttatgcaaaacaacttatgcaaataaataagcttttatgtattattaataagcttgtcaaggtagtttat 40581103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 7292671 - 7292740
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||| ||| ||||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  7292671 ttatgtaaagcaacttatgcaaatacataagctcttatgtattattcataagtttgtcaatatagtttat 7292740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 11528882 - 11528951
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| || | |||||||||||||||||||||||||| ||||| ||| ||||||||    
T  11528882 ttatgcaaaacaacttatgtaagtaaataagcttttatgtattattcataaatttgttaatgtagtttat 11528951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 22809312 - 22809219
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagc-ttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||||| ||||| | ||||||||||||  ||||| |||| ||||||| |||||| ||||||||||||| |||||||  ||||||||    
T  22809312 tttgaattgacttatttttgaggttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgtcaaggtagtttat 22809219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 29270329 - 29270421
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||| | ||||||||||||| ||||   ||| ||||||||||||||||||||||||||| || |||| ||| |||||    
T  29270329 tttggattgacttatttttgagcttatgcaaaacaacttataggaataaataagcttttatgtattattcataagcttttcaagataatttat 29270421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 34707831 - 34707739
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||| | ||||||||||||| ||| | ||||  |||||||||||||||||||||||||| |||| ||  ||||||||    
T  34707831 tttggattgacttatttttgagcttatgcaaaacaacttacgtaaatatataagcttttatgtattattcataagcttgttaaggtagtttat 34707739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 53218158 - 53218066
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||  | ||||||||||||| |||||  ||| |||||| |||||||||||||||||||| |||||||  ||||||||    
T  53218158 tttggattgacttattttttagcttatgcaaaacaacttatgcgaataaataagattttatgtattattcataagcttgtcaaggtagtttat 53218066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 32901242 - 32901174
Alignment:
Q  288 tatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||| ||||| |||| ||||||||||||| ||||||||| || ||||| || |||||||||    
T  32901242 tatgcaaaacaacttatgtaaataaataagcttttatttattattcacaaatttgttaagatagtttat 32901174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 43971937 - 43971873
Alignment:
Q  292 caaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||| | |||| ||||||||||||| ||||||||| |||||||| || |||||||||    
T  43971937 caaaacaatttacgtaaataaataagcttttatttattattcacaagtttgttaaaatagtttat 43971873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 10272090 - 10272164
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataag 338  Q
    |||| ||||||||| ||||  | ||||||||||||| | ||| |||| ||||| |||||||||||||||||||||    
T  10272090 tttggattgacttattttttagcttatgcaaaacaactcatgcaaataaataaacttttatgtattattcataag 10272164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 10448765 - 10448834
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| |||| || ||||||||||||| ||||| |||| ||| ||||||||    
T  10448765 ttatgcaaaacaacttatgcaaataaatatgcctttatgtattatttataagcttgttaatgtagtttat 10448834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 10521165 - 10521214
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||||||||||||||| |||||||| ||||||||    
T  10521165 aaataaataagcttatatgtattattcataagcttgtcaatgtagtttat 10521214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 10667409 - 10667458
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||| ||||||||||||||||| |||||||| ||||||||    
T  10667409 aaataaataagcttatatgtattattcataagcttgtcaatgtagtttat 10667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 24842196 - 24842143
Alignment:
Q  293 aaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||||| ||||| |||| |||||  ||||||||||||||||||||||||||||    
T  24842196 aaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaa 24842143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 52421216 - 52421167
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  52421216 aaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 52421167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 5129995 - 5129916
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||||||||||||| ||||  | ||||||||||||| ||||| |||  |||||| |||| |||||||| |||||| ||||    
T  5129995 tttgaattgacttatttttaagcttatgcaaaacaaattatgcaaacaaataagattttgtgtattatccataagcttgt 5129916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 43080015 - 43079960
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||||| ||||||||||| |||||||  ||||||||    
T  43080015 ttatgcaaataaataagcttttatgtgttattcataagcttgtcaaggtagtttat 43079960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 52021251 - 52021306
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||| |||||||||||||||||||||| |||||||  ||||||||    
T  52021251 ttatgcaaataaatatgcttttatgtattattcataagattgtcaaggtagtttat 52021306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 36266241 - 36266291
Alignment:
Q  293 aaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||||| |||||| |||| ||||| ||||||||||||||| ||||||||||    
T  36266241 aaaacagtttatgcaaataaataaacttttatgtattatttataagtttgt 36266291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 3845866 - 3845915
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||||||| ||||||||||||| |||||||  ||||||||    
T  3845866 aaataaataagcttttatatattattcataagcttgtcaagctagtttat 3845915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 23555452 - 23555521
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattc 333  Q
    |||| |||| |||| ||||| | |||| | ||||| |||||| |||| ||||||||||||||||||||||    
T  23555452 tttggattggcttatttttgagcttatacgaaacagtttatgcaaataaataagcttttatgtattattc 23555521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 27769629 - 27769705
Alignment:
Q  279 ttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||||||||||| ||||| |||| ||| | ||||| | ||||||| ||||| |||||||| ||||||||    
T  27769629 ttttgagtttatgcaaaacaacttatgcaaataaatgaactttt-tatattatttataagcttgtcaatgtagtttat 27769705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 4257390 - 4257342
Alignment:
Q  293 aaaacaatttatgaaaatgaataagcttttatgtattattcataagttt 341  Q
    ||||||| ||||| |||| |||||| |||||||||||||| ||||||||    
T  4257390 aaaacaacttatgcaaataaataagtttttatgtattatttataagttt 4257342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 5129897 - 5129841
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||| |||||| ||| |||||||||||||||| |||||||| || |||||    
T  5129897 tttatgcaaataaataagttttaatgtattattcataagcttgtcaatgtactttat 5129841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 30199038 - 30198982
Alignment:
Q  300 tttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||| |||||| |||||||| ||||||||||||| || ||| ||||||||    
T  30199038 tttatgcaaataaataagtttttatgtgttattcataagttagtaaatgtagtttat 30198982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 30533974 - 30534040
Alignment:
Q  290 tgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  30533974 tgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgtaaatgtagtttat 30534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 10054386 - 10054441
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  10054386 ttatgcaaataaataagcttttatgtattattcataagtttgtaaatgtagtttat 10054441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 2040281 - 2040225
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    ||||||||||||| ||||  |||| ||||||||||||| ||||||||||||||||||    
T  2040281 ttatgcaaaacaacttatataaataaataagcttttatttattattcataagtttgt 2040225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 2034310 - 2034255
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  2034310 ttatgcaaataaataagcttttatgtattatttataagtttgtcaaggtagtttat 2034255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 4272371 - 4272442
Alignment:
Q  285 gtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||||||||||||| |||| |||||  ||||||||||||| ||||||||| | ||| ||||||||    
T  4272371 gtttatacaaaacaatttatgcaaataaataactttttatgtattatacataagtttataaatgtagtttat 4272442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 22816674 - 22816611
Alignment:
Q  293 aaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| |||| |||||| ||||||||| ||||||||||||| | |||||| |||||    
T  22816674 aaaacaatttatgcaaataaataagtttttatgtaatattcataagtttttaaatataatttat 22816611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 3211093 - 3211027
Alignment:
Q  290 tgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||  ||||| |||| ||||||||||||||||||| | ||||| |||||||| ||||||||    
T  3211093 tgcaaaacagcttatgcaaataaataagcttttatgtattactgataagcttgtcaatgtagtttat 3211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 9201853 - 9201768
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtca 345  Q
    |||||||  |||| |||| ||||| | ||| ||||||||  ||||| |||||||||||||||  ||||||||||||||| ||||||    
T  9201853 cccattttgattggcttaattttgagcttacgcaaaacagcttatgcaaatgaataagctttgctgtattattcataagcttgtca 9201768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 29623572 - 29623503
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| ||||| ||||||| ||||||| || ||||||| ||| ||||||||    
T  29623572 ttatgcaaaacaacttatgcaaataaataaccttttatttattatttatgagtttgttaatgtagtttat 29623503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 34509931 - 34509972
Alignment:
Q  315 aagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  34509931 aagcttttatgtattattcataagtttgtcaatggagtttat 34509972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 1240686 - 1240647
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  1240686 aaataaataagcttttatgtattattcataagcttgtcaa 1240647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 2027257 - 2027202
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||||||||||| |||||||| ||||||||||| | |||||||    
T  2027257 ttatgcaaataaataagcttttatgcattattcagaagtttgtcaagacagtttat 2027202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 12817173 - 12817118
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||||||| |||||||||||||||| | |||||| ||||||||    
T  12817173 ttatgcaaataaataagctttaatgtattattcataagctagtcaatgtagtttat 12817118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 356
Target Start/End: Original strand, 8014751 - 8014848
Alignment:
Q  258 gacccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||| |||| |||| ||||| ||||||  ||||||  ||||| |||| | |||||||||||  |||||||||||| |||||||  ||||||||    
T  8014751 gacccatttggattggctta-ttttgagtttatagaaaacagcttatgcaaataagtaagcttttattcattattcataagcttgtcaaggtagtttat 8014848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 6632650 - 6632719
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||||||| ||||| |||| |||| |||||||||||||||| ||||  |||| ||| ||||||||    
T  6632650 ttattcaaaacaacttatgcaaataaatatgcttttatgtattatttataaacttgttaatgtagtttat 6632719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 6758618 - 6758687
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| ||||||||||| | |||||| |||||| |||| ||  ||||||||    
T  6758618 ttatgcaaaacaacttatgcaaataaataagcttttgtttattatccataagcttgttaaggtagtttat 6758687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 10755361 - 10755316
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||| |||| |||||||||||| |||||||||||||| |||||||    
T  10755361 ttatgcaaataaataagcttttacgtattattcataagcttgtcaa 10755316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 2255725 - 2255781
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    ||||||||||| | ||||| |||| ||| ||||||||||||| ||||||||| ||||    
T  2255725 ttatgcaaaacgacttatgcaaataaatgagcttttatgtatgattcataagcttgt 2255781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 7267791 - 7267835
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||||||||||||||||| ||| |||  ||||||||    
T  7267791 aataagcttttatgtattattcataagcttgccaaggtagtttat 7267835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 10658364 - 10658304
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttat 324  Q
    ||||||||| |||| ||||| ||||||| |||| |||| ||| |||| |||||||||||||    
T  10658364 tttgaattgtcttatttttgagtttatgaaaaataattaatgcaaataaataagcttttat 10658304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 24625819 - 24625911
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| |||| ||||| | ||| |||| ||||  |||| |||| |||| |||||||||||||||||||||| |||| ||  ||||||||    
T  24625819 tttggattgtcttatttttgaggttaggcaagacaacatatgcaaataaatacgcttttatgtattattcataagcttgttaaggtagtttat 24625911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 356
Target Start/End: Original strand, 18327487 - 18327584
Alignment:
Q  259 acccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||| ||||||||| ||| |  ||||| |||||||  ||||| |||| ||||||||||||||||||| ||||||| ||||||| |||||||||    
T  18327487 acccgtttggattgacttattttggaatttattcaaaacagcttatgcaaataaataagcttttatgtattactcataagcttgtcaagatagtttat 18327584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 1265811 - 1265719
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||||||| ||||| | ||||||||||||| ||||  |||   ||||| ||||||||||||||||||| ||||||||  ||||||||    
T  1265811 tttgaattgacttatttttgagcttatgcaaaacaacttatacaaacagataagattttatgtattattcataattttgtcaaggtagtttat 1265719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 10365162 - 10365231
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||||| |||||||||| ||||||||||||||| ||||| |||||||  ||||||||    
T  10365162 ttatgtaaaataatttatgcaaatgaataaacttttatgtattattaataagcttgtcaaagtagtttat 10365231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 10850166 - 10850097
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||| | ||| || |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  10850166 ttatgcaaaatagtttttgcaaataaataagcttttatgtattattcataaggttgtcaacgtagtttat 10850097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 20169255 - 20169324
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| ||||||  ||||| |||| ||||||||||||||||||||| |||||||| | ||||||||||||    
T  20169255 ttatgaaaaacagcttatgcaaataaataagcttttatgtattatttataagtttttaaatatagtttat 20169324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 10082218 - 10082310
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||| |||||| ||||| |||| ||  |||||| ||||| |||| |||||| |||||||| ||||| |||||||||||||  ||||||||    
T  10082218 tttgaatggacttatttttgagtttttgtgaaacaacttatgcaaataaataagtttttatgtgttattgataagtttgtcaaggtagtttat 10082310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 37712036 - 37712127
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||| ||| ||||| | | ||| |||||| |||||| ||||||||||||||||||||| |||||||||| |||||||  ||||||||    
T  37712036 tttggattgatttatttttgagctaatgaaaaacagtttatgcaaatgaataagcttttatgta-tattcataagcttgtcaaggtagtttat 37712127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 49738404 - 49738328
Alignment:
Q  279 ttttgggtttatgcaaaacaatttatgaaaatgaataa-gcttttatgtattattcataagtttgtcaatatagttt 354  Q
    ||||| |||||||||||||||  ||||||||| || || | ||||||| |||||||||||||||||||| |||||||    
T  49738404 ttttgagtttatgcaaaacaacatatgaaaataaaaaaagtttttatgaattattcataagtttgtcaaaatagttt 49738328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 6337837 - 6337782
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  6337837 ttatgtaaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 6337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 28689966 - 28690064
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaata--agcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| |||| |||| ||||  ||||||||| ||||  ||||| |||| ||||  || ||||||||||||||||||||||||||||  ||||||||    
T  28689966 cccatttggattggcttattttttagtttatgcagaacagcttatgcaaataaatataaggttttatgtattattcataagtttgtcaaggtagtttat 28690064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 391136 - 391225
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagc-ttttatgtattattcataagtttgtcaatatagt 352  Q
    |||| |||| |||| ||||| | ||||||||||||  ||||| |||| ||||||| |||||| ||||||||||||| |||||||| ||||    
T  391136 tttggattggcttatttttgaggttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgtcaatgtagt 391225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 4068126 - 4068175
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||||||||||||||||||||| |||||||  ||||||||    
T  4068126 aaataaataagcttttatgtattattcataagcttgtcaaggtagtttat 4068175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 356
Target Start/End: Complemental strand, 26946227 - 26946130
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagc-ttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| ||||||||| ||||| | |||||||||||   ||||| |||| ||||||| |||||||| ||||||||||| |||| ||  ||||||||    
T  26946227 cccatttggattgacttatttttgagcttatgcaaaacggcttatgtaaataaataagctttttatgtgttattcataagcttgttaaggtagtttat 26946130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 35590103 - 35590180
Alignment:
Q  269 attgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||||||| ||||  | ||||| ||||||| ||||| |||| |||||||||||||||||  |||||||| |||||||    
T  35590103 attgacttattttttagcttatgtaaaacaacttatgcaaataaataagcttttatgtatagttcataagcttgtcaa 35590180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 35897718 - 35897649
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| ||||| |||| |||||| |||||| ||||||||||||| || ||||  ||||||||    
T  35897718 ttatgcaaaacaacttatgcaaataaataagtttttatttattattcataagcttttcaaagtagtttat 35897649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 15515417 - 15515373
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||    
T  15515417 aataagcttttatgtattattcataagcttgtcaaggtagtttat 15515373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 16225477 - 16225553
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtt 340  Q
    |||| ||||||||| ||| | | |||||||||||| |||||| |||| |||||| |||||||||||| | |||||||    
T  16225477 tttggattgacttattttagagcttatgcaaaacagtttatgtaaataaataagtttttatgtattaattataagtt 16225553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 41003381 - 41003437
Alignment:
Q  290 tgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||||| || ||||| |||| |||||| |||||||||||||| |||||||||||||    
T  41003381 tgcaaaaaaacttatgcaaataaataagtttttatgtattatttataagtttgtcaa 41003437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 41196780 - 41196736
Alignment:
Q  312 aataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||    
T  41196780 aataagtttttatgtattattcataagcttgtcaatgtagtttat 41196736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 26542970 - 26543033
Alignment:
Q  293 aaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||| ||||| |||| |||| |||||||||||||||  |||||||||| ||| ||||||||    
T  26542970 aaaacaacttatgcaaataaatatgcttttatgtattatatataagtttgttaatgtagtttat 26543033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 36423062 - 36423007
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| ||||||||||||| |||||||||||||||||| ||  ||||||||    
T  36423062 ttatgcaaataaataagcttttatttattattcataagtttgttaaggtagtttat 36423007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 46501090 - 46501027
Alignment:
Q  293 aaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||| |||| ||| ||||||| ||||||||| ||||| |||||| | ||||||||    
T  46501090 aaaacaatttatgtaaataaatgagcttttttgtattatttataagcttgtcattgtagtttat 46501027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 51409788 - 51409733
Alignment:
Q  301 ttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||| |||| |||||| || |||||||||||||||||||||| ||| ||||||||    
T  51409788 ttatgcaaataaataagtttgtatgtattattcataagtttgtaaatgtagtttat 51409733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 39941463 - 39941501
Alignment:
Q  318 cttttatgtattattcataagtttgtcaatatagtttat 356  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  39941463 cttttatgtattattcataagcttgtcaaaatagtttat 39941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 356
Target Start/End: Complemental strand, 1565502 - 1565408
Alignment:
Q  260 cccatttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| |||||||||||| || | |||||  |||||  ||||| |||| || ||||||||||| ||||||| |||| |||||||  ||||||||    
T  1565502 cccatttggattgacttacttctgagcttatg--aaacagcttatgtaaataaacaagcttttatgcattattcgtaagcttgtcaaggtagtttat 1565408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 15631895 - 15631964
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||||||| ||||  |||| |||||| |||||||||||||| |||||||||| ||| || |||||    
T  15631895 ttatacaaaacaacttatacaaataaataagtttttatgtattatttataagtttgttaatgtattttat 15631964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 26988159 - 26988208
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||||||||||||| ||||||||||| |||||||  ||||||||    
T  26988159 aaataaataagcttttatgtcttattcataagcttgtcaaggtagtttat 26988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 16889040 - 16889004
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  16889040 aaataaataagcttttatgtattattcataagcttgt 16889004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 19284864 - 19284956
Alignment:
Q  264 tttgaattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||| ||||||||| | | ||||  ||||||  ||||  |||| |||||||| |||||||||||| |||||||||| || ||| |||||    
T  19284864 tttgaattaacttactttagagcttatataaaacagcttatataaataaataagctattatgtattatttataagtttgttaagatattttat 19284956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 46689645 - 46689597
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcat 335  Q
    |||||||||||| |||||| |||| || |||||||||| ||||||||||    
T  46689645 ttatgcaaaacagtttatgcaaataaaaaagcttttatttattattcat 46689597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 24740 - 24795
Alignment:
Q  291 gcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaa 346  Q
    ||||||||  ||||| |||| ||||||||||||||||||||||||||| |||||||    
T  24740 gcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgtcaa 24795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 14821 - 14772
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| |||||||||||||||||||||||||||||| | ||| ||||||||    
T  14821 aaataaataagcttttatgtattattcataagtttttaaatgtagtttat 14772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 1266 - 1354
Alignment:
Q  268 aattgacttacttttgggtttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||||||||| ||| | | ||||||||||||| ||||| |||||||||||  || || ||||||| |||||||||| ||  ||||||||    
T  1266 aattgacttattttagagcttatgcaaaacaacttatgcaaatgaataaggattaatatattatttataagtttgttaaggtagtttat 1354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 178498 - 178545
Alignment:
Q  294 aaacaatttatgaaaatgaataagcttttatgtattattcataagttt 341  Q
    |||||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  178498 aaacaacttatgcaaataaataagcttttatgtattatttataagttt 178545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 58943 - 58894
Alignment:
Q  307 aaatgaataagcttttatgtattattcataagtttgtcaatatagtttat 356  Q
    |||| ||||| | |||||||||||||| ||||||||||||| ||||||||    
T  58943 aaataaataaacgtttatgtattattcttaagtttgtcaatgtagtttat 58894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 1049 - 1105
Alignment:
Q  287 ttatgcaaaacaatttatgaaaatgaataagcttttatgtattattcataagtttgt 343  Q
    |||| |||||||| ||||| |||| ||||||||||||| |||||| |||||| ||||    
T  1049 ttatacaaaacaacttatgcaaataaataagcttttatttattatccataagattgt 1105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University