View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9551_high_3 (Length: 493)
Name: NF9551_high_3
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9551_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Complemental strand, 39680694 - 39680226
Alignment:
| Q |
18 |
gtaagaattaagacatgtctgaaaatatggtaaatagatatagctaaagttagtaaatctaaagcattacaacaaatcaaagtcgtgacaggggatacta |
117 |
Q |
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| T |
39680694 |
gtaagaattaagacatatctgaaaatatggtaaatagatatagctaaagttagtaaatctaaagcattacaacaaatcaaagtcgtgacaggggatacta |
39680595 |
T |
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| Q |
118 |
atactatagtatagttaattaactgcattgaacattctatttagtcttgcgatggatattgatatctaaagtcccaaatagatttttcttcctcctgacc |
217 |
Q |
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| T |
39680594 |
atactatagtatagttaattaactgcattgaacattctatttagtcttgcgatggatattgatatctaaagtcccaaatagatttttcttcctcctgacc |
39680495 |
T |
|
| Q |
218 |
atgtagattatgctcttgattttgagtaaaatccatgttgttattaccttttaccatttcgagtgccgcttcgaattcatgatcatccacatcgttcagc |
317 |
Q |
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| T |
39680494 |
atgtagattatgctcttgattttgagtaaaatccatgttgttattacctttcaccatttcgagtgccgcttcgaattcatgatcatccacatcattcagc |
39680395 |
T |
|
| Q |
318 |
caatgttcaacatcccatccaaatttcccaccttcaatctctcccattttcaaccaatcatcaacattttcaattcttgcatcacaatcaagcaacttag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680394 |
caatgttcaacatcccatccaaatttcccaccttcaatctctcccattttcaaccaatcatcaacattttcaattcttgcatcacaatcaagcaacttag |
39680295 |
T |
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| Q |
418 |
gaacacggtgtgttaaactcatagccataggtaacttactttgtggaccctctacatcatcaccaccaa |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39680294 |
gaacacggtgtgttaaactcatagccataggtaacttactctgtggaccctctacatcatcaccaccaa |
39680226 |
T |
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