View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9551_high_6 (Length: 250)

Name: NF9551_high_6
Description: NF9551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9551_high_6
NF9551_high_6
[»] chr2 (9 HSPs)
chr2 (1-240)||(30275901-30276140)
chr2 (1-240)||(32349886-32350125)
chr2 (1-240)||(23384855-23385094)
chr2 (1-240)||(21963420-21963659)
chr2 (35-240)||(21964639-21964844)
chr2 (1-159)||(27914653-27914811)
chr2 (1-236)||(38938484-38938717)
chr2 (105-240)||(1258577-1258712)
chr2 (82-192)||(22300856-22300966)
[»] chr4 (25 HSPs)
chr4 (1-240)||(23158121-23158360)
chr4 (1-240)||(36279174-36279413)
chr4 (1-240)||(51872697-51872936)
chr4 (1-236)||(18116357-18116592)
chr4 (1-240)||(22340591-22340830)
chr4 (1-233)||(4303180-4303412)
chr4 (1-240)||(29123409-29123649)
chr4 (1-240)||(15649038-15649277)
chr4 (42-236)||(17826756-17826950)
chr4 (1-212)||(8110930-8111141)
chr4 (1-240)||(3621514-3621753)
chr4 (1-236)||(12915803-12916038)
chr4 (1-137)||(15705634-15705770)
chr4 (106-193)||(50693772-50693859)
chr4 (105-193)||(36951317-36951405)
chr4 (1-48)||(6614197-6614244)
chr4 (106-193)||(17469142-17469229)
chr4 (109-177)||(24059763-24059831)
chr4 (1-47)||(17838698-17838744)
chr4 (145-240)||(25135460-25135556)
chr4 (1-58)||(36951213-36951270)
chr4 (1-58)||(50693907-50693964)
chr4 (103-198)||(13026677-13026772)
chr4 (1-51)||(17469284-17469334)
chr4 (1-53)||(29192473-29192525)
[»] chr3 (17 HSPs)
chr3 (1-240)||(3514696-3514935)
chr3 (13-240)||(9819084-9819311)
chr3 (1-236)||(23571596-23571831)
chr3 (1-240)||(17153778-17154017)
chr3 (1-239)||(42462732-42462970)
chr3 (1-164)||(53152132-53152295)
chr3 (1-236)||(8595269-8595504)
chr3 (1-240)||(23603275-23603513)
chr3 (1-240)||(48547566-48547805)
chr3 (62-236)||(42459278-42459452)
chr3 (88-193)||(16664075-16664180)
chr3 (105-193)||(52196402-52196490)
chr3 (105-240)||(10754179-10754314)
chr3 (105-240)||(39632803-39632938)
chr3 (1-58)||(16663988-16664045)
chr3 (1-53)||(10754075-10754127)
chr3 (1-53)||(39632990-39633042)
[»] chr6 (8 HSPs)
chr6 (1-240)||(18295367-18295606)
chr6 (13-240)||(2894261-2894488)
chr6 (1-236)||(667287-667512)
chr6 (1-240)||(28604858-28605097)
chr6 (4-236)||(7218325-7218557)
chr6 (82-239)||(17228029-17228186)
chr6 (13-136)||(9759578-9759701)
chr6 (105-193)||(5391535-5391623)
[»] chr8 (6 HSPs)
chr8 (1-240)||(26077697-26077936)
chr8 (21-240)||(31423212-31423431)
chr8 (2-193)||(29532370-29532561)
chr8 (105-222)||(10801669-10801786)
chr8 (1-92)||(2959709-2959800)
chr8 (1-193)||(26390260-26390452)
[»] chr7 (21 HSPs)
chr7 (1-240)||(12121598-12121837)
chr7 (1-240)||(24819709-24819948)
chr7 (1-236)||(40891739-40891974)
chr7 (1-230)||(37075571-37075800)
chr7 (13-199)||(36575394-36575580)
chr7 (1-240)||(9403103-9403335)
chr7 (1-230)||(586796-587025)
chr7 (1-240)||(34981859-34982098)
chr7 (1-235)||(20705468-20705702)
chr7 (1-235)||(20873512-20873746)
chr7 (103-239)||(27987539-27987675)
chr7 (85-240)||(18815364-18815519)
chr7 (85-239)||(8457156-8457310)
chr7 (105-222)||(47548962-47549079)
chr7 (105-222)||(47553405-47553522)
chr7 (1-188)||(27868912-27869099)
chr7 (105-193)||(22865766-22865854)
chr7 (19-190)||(5196663-5196834)
chr7 (1-58)||(45649314-45649371)
chr7 (103-155)||(1761072-1761124)
chr7 (1-53)||(22865906-22865958)
[»] chr1 (10 HSPs)
chr1 (13-240)||(27029976-27030203)
chr1 (1-236)||(41342783-41343018)
chr1 (13-240)||(10003955-10004182)
chr1 (1-236)||(49369779-49370014)
chr1 (85-177)||(24545091-24545183)
chr1 (82-239)||(28520809-28520966)
chr1 (105-240)||(26996079-26996214)
chr1 (105-240)||(37668969-37669104)
chr1 (1-52)||(5557279-5557330)
chr1 (102-182)||(48710109-48710189)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-236)||(74310-74545)
[»] chr5 (11 HSPs)
chr5 (1-240)||(5824940-5825179)
chr5 (1-236)||(6678553-6678786)
chr5 (1-236)||(11266037-11266272)
chr5 (1-212)||(27891710-27891921)
chr5 (1-105)||(10462243-10462347)
chr5 (1-240)||(31962643-31962882)
chr5 (1-189)||(29150317-29150504)
chr5 (105-193)||(29322909-29322997)
chr5 (106-193)||(38931886-38931973)
chr5 (106-190)||(8896363-8896447)
chr5 (1-58)||(8895396-8895453)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-240)||(58367-58606)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-236)||(224701-224936)
[»] scaffold0289 (1 HSPs)
scaffold0289 (85-240)||(11161-11316)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30275901 - 30276140
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30275901 ccataataatcacattggaaaaacaaatgatctctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 30276000  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30276001 gaagattatcctttgtagcgagtctattcagaaagagcctccaaacaaaaatattaacttttaagggaaccgctttaagccataaaaattgatcaaaatc 30276100  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  30276101 tgcagtgatgttagtgtccaccgctgttaagtaagaataa 30276140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32349886 - 32350125
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32349886 ccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 32349985  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32349986 gaagaatatcctttgtagcaagtctattcagaaagagccacgaaacaaaaatattaacttttaagggaatcgctttaagccataaaaattgatcaaaatc 32350085  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||| ||||| |||||||||||||| |||||||||    
T  32350086 tgcagtgatattagtatccaccgctgttaagtaagaataa 32350125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23384855 - 23385094
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  23384855 ccataataatcacattggaagaacaaatgatcactttcctcctctttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 23384954  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  23384955 gaagattatcctttgtagcatgtctattcagaaagagccgccaaacaaaaatattaacttttaaaggaaccgctttaagccataaaaattgatcaaactc 23385054  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||| ||||| |||||| ||||||| |||||||||    
T  23385055 tgcagtgatattagtatccaccactgttaagtaagaataa 23385094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 21963420 - 21963659
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  21963420 ccataataatcacatcgaaaaaacaaatgatccttttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 21963519  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||    
T  21963520 gaagattatcctttgtagcaagtcgattcagaaagagcctccaaacaaaaatattaacttttaaagggaccgctttaagccataaaaattgatcaaactc 21963619  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||  ||||| ||||||| |||||| |||||||||    
T  21963620 tgcagtgagattagtatccaccgttgttaagtaagaataa 21963659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 35 - 240
Target Start/End: Original strand, 21964639 - 21964844
Alignment:
Q  35 tttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaa 134  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||    
T  21964639 tttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgcgaagattatcctttgtagcaagtcgattcagaaa 21964738  T
Q  135 gagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataa 234  Q
    ||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||  ||||| ||||||| |||||| |||    
T  21964739 gagcctccaaacaaaaatattaacttttaaagggaccgctttaagccataaaaattgatcaaactctgcagtgagattagtatccaccgttgttaagtaa 21964838  T
Q  235 gaataa 240  Q
    ||||||    
T  21964839 gaataa 21964844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 27914811 - 27914653
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| || |||||||||||||    
T  27914811 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacatatagcaccataaaaaacattggtagcctcgaggacattcctcttgc 27914712  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaact 159  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  27914711 gaagattatcctttgtagcaagtctattcagaaagaaccgtcaaacaaaaatattaact 27914653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38938484 - 38938717
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||  |||||||| |||  ||||||| ||  |||||||||||||    
T  38938484 ccataataatcacattgaaaaaataaatggtccctttcctcctccttaccacataaggccgcacaagaagcatatgtagcctgaaagacattcctcttgc 38938583  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| |||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||| ||    
T  38938584 gaagattgtcctttgtagtaagtctattcagaaagagacgccaaacaaaaatgttaatttttaagggaaccgctttaagccataaaaactgatcaaactc 38938683  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    |  ||||||| |  ||||||||  ||||||||||||    
T  38938684 t--agtgatgctgatgtccaccattgttaaataaga 38938717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 1258577 - 1258712
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||| || ||||| || || |||||||||||   |||||||||||||| ||||||| ||    
T  1258577 attatcttttgtagcaagtctattcagaaagagacgcaaaacaaatatgttaaccttcaacggaaccgcttttaaccataaaaattgattaaaatcttca 1258676  T
Q  205 gtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |  ||||||||||||||||| ||||| || ||||||    
T  1258677 gaaatgttagtgtccaccgccgttaagtacgaataa 1258712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 22300856 - 22300966
Alignment:
Q  82 tcaagaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggcc 181  Q
    ||||| ||||| || ||||| | |||||||||||||||| |||||||||||||||| || |  ||||| || ||||| || || |||||| ||||   ||    
T  22300856 tcaaggacatttcttttgcgcaaattatcctttgtagcaggtctattcagaaagagacgtcttacaaatatgttaaccttcaacggaaccacttttaacc 22300955  T
Q  182 ataaaaattga 192  Q
    |||||||||||    
T  22300956 ataaaaattga 22300966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23158360 - 23158121
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23158360 ccataataatcatattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 23158261  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||     
T  23158260 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaaggggactgctttaagccataaaaattgatcaaaata 23158161  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  23158160 tgcagtgatgttagtgtccaccgctgttaagtaagaataa 23158121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36279413 - 36279174
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36279413 ccataataagcacattggaaaaacaaatgatcccttttctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttac 36279314  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36279313 gaagattatcctttgtagcaagtctattcagaaagaaccgccaaacaaaaatattaacttttaagggaaccgctttaagccataaaaattgatcaaaatc 36279214  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  36279213 tgcagtgatgttagtgtccaccgctgttaagtaagaataa 36279174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 51872697 - 51872936
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  51872697 ccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccaaataaagcaccataggaaacattggtagcctcaagaacattcctcttgc 51872796  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  51872797 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaattgaacaaaatc 51872896  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  51872897 tgcagtgatgttagtgtctgccgctgttaaataagaataa 51872936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 18116592 - 18116357
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||    
T  18116592 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaggctccacaagaaacattggtagcctcaaggacattcctcttgc 18116493  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  18116492 gaagattgtcctttgtagcaaatctattcagaaagagacgccaaacaaaaatgttaacttttaaaggaaccgctttaagccataaaaattgatcaaactc 18116393  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||||||||||||||| |||||||||||||| |||||    
T  18116392 tgcagtgatgttagtatccaccgctgttaagtaaga 18116357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22340591 - 22340830
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||  ||||||||  ||  ||||||| ||| |||||||||||||    
T  22340591 ccataataatcacattgaaaaaacaaatgatctctttcctcctccttaccacacaaggccacacaagaagtatctgtagcctgaaggacattcctcttgc 22340690  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||| || |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||  |    
T  22340691 gaaggttgtcctttgtagcaagtctatttagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaacac 22340790  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||| ||  ||||||||| ||||||||||||||||    
T  22340791 tgcagtgatattgatgtccaccgttgttaaataagaataa 22340830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4303412 - 4303180
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||  ||||||||  ||  ||||| | ||| | |||||||||||    
T  4303412 ccataataatcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcacaagaagaatctgtagcatgaaggatattcctcttgc 4303313  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  4303312 gaagattgtcctttgtagcaagtctattcagaaaaagacgccaaacaaaaatattaacttttaagggaaccgctttaagccataaaaattgatcaaactc 4303213  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaata 233  Q
    ||||||||| ||  ||||||||| |||||||||    
T  4303212 tgcagtgatattgatgtccaccgttgttaaata 4303180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29123649 - 29123409
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||| |||||||||| ||||||||||| || |||||||||||||||||||| || ||  ||||||||  ||  ||||||| ||| |||||||||||||    
T  29123649 ccataaaaatcacattgaaaaaacaaatggtctctttcctcctccttaccacacaaggccgcacaagaagtatctgtagcctgaaggacattcctcttgc 29123550  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaaggg-aaccgctttaggccataaaaattgatcaaaat 199  Q
    |||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |    
T  29123549 gaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaaccgctttaagccataaaaattgatcaaact 29123450  T
Q  200 ctgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||||||||| ||  ||||||||| ||||||||||||||||    
T  29123449 ctgcagtgatattgatgtccaccgttgttaaataagaataa 29123409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 15649277 - 15649038
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| ||||||| |||| ||||||||||| || ||||||| |||||    
T  15649277 ccataataatcacattgaaaaaataaatggtctctttcctcctccttaccacataaagtaccacaaaaaacgttggtagcctcgaggacattccgcttgc 15649178  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||| || || |||||| ||||||| || |||||||| ||    
T  15649177 gaagattatcctttgtagcaaggcgattcagaaagagcctccaaacaaaaatattaacctttaaagggactgctttaagccataataaatgatcaaactc 15649078  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||| |||| ||||| ||||||| |||||| |||||||||    
T  15649077 tgcattgatattagtatccaccgttgttaagtaagaataa 15649038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 42 - 236
Target Start/End: Complemental strand, 17826950 - 17826756
Alignment:
Q  42 ctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgc 141  Q
    |||||||||||| || ||  |||||||| |||  ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  17826950 ctccttaccacacaaggccgcacaagaagcatctgtagcctgaaggacattcctcttgcgaagattctcctttgtagcaagtctattcagaaagagacgc 17826851  T
Q  142 caaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||||| ||| ||||||| ||  ||||||||| ||||||||||||    
T  17826850 caaacaaaaatgttaacttttaaggaaaccactttaagccataaaaattgatcaaactctacagtgatattgatgtccaccgttgttaaataaga 17826756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 8110930 - 8111141
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| || ||  | ||||| ||||||| | ||||||  || ||||||||||    
T  8110930 ccataatgatcacattgaaaaaagaaatggtccctttcctcctccttaccacacaaggccgcgcaagacacattggaaacctcaaagacgttcctcttgc 8111029  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | || || |||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||| ||| ||    
T  8111030 gcaggttgtcctttgttgcaagtctattcagaaagagacgccatacaaaaatattaacctttaatggaaccgctttaagccataaaaattgattaaactc 8111129  T
Q  201 tgcagtgatgtt 212  Q
    ||||||||||||    
T  8111130 tgcagtgatgtt 8111141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3621514 - 3621753
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||||||||| ||||| || |||||||||||||||||||| || |   | ||||| ||||||| | |||||||||| |||||||| |    
T  3621514 ccataatgatcacattggaaaaaaaaatggtctctttcctcctccttaccacacaaggtcgcgcaagacacattggaaacctcaagaacgttcctcttac 3621613  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | || || |||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| || |||| |||| ||||||||||||||| ||| ||    
T  3621614 gcaggttgtcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaacctttaatgggaccggtttaagccataaaaattgattaaactc 3621713  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||| ||   ||||||||| |||||||||||||||    
T  3621714 tgcagtgatattgaagtccaccgccgttaaataagaataa 3621753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12915803 - 12916038
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||  |||||||| ||||| ||||  || |||||||||||||||||||| || ||  |||||||||||||| ||||| |||| |||||||| ||||    
T  12915803 ccataatggtcacattgaaaaaataaattgtctctttcctcctccttaccacacaaggccgcacaagaaacattgttagccgcaaggacattccttttgc 12915902  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | |  || | ||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||| |||||||| ||| |||| || ||||| | ||||||    
T  12915903 gcaagttgttctttgtagcaattctattcagaaagagacgccaaacaaaaatgttaacctttaacggaaccgccttaagccacaagaattggttaaaatc 12916002  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    | ||||||| || ||||||| |||||||| ||||||    
T  12916003 ttcagtgatcttggtgtccatcgctgttagataaga 12916038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 15705770 - 15705634
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||  |||||||| |||  ||||||| ||| | |||||||||||    
T  15705770 ccataataatcacattgaaaaaacaaatgatccctttcctcctccttatcacacaaggccgcacaagaagcatctgtagcctgaaggatattcctcttgc 15705671  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagag 137  Q
    ||||||| || ||||||||||||| ||||||| ||||    
T  15705670 gaagattgtcatttgtagcaagtccattcagagagag 15705634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 50693859 - 50693772
Alignment:
Q  106 ttatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||   ||||||||||||||    
T  50693859 ttatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaattgat 50693772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 36951317 - 36951405
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    |||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| || || |||||||||||   ||||||||||||||    
T  36951317 attatcttttgtagcaagtctattcagaaagagacgccatacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaattgat 36951405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6614244 - 6614197
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctcctta 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614244 ccataataatcacattggaaaaacaaatgatccctttcctcctcctta 6614197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 17469229 - 17469142
Alignment:
Q  106 ttatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||||| ||||| || || |||||||||||   ||||||||| ||||    
T  17469229 ttatcttttgtagcaagtctattcagaaagagatgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaaatgat 17469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 24059763 - 24059831
Alignment:
Q  109 tcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgcttta 177  Q
    |||||||||||||||||| ||| |||||| || ||||||||||||||||||||||| | ||||| ||||    
T  24059763 tcctttgtagcaagtctactcataaagagacgtcaaacaaaaatattaacttttaacgaaaccgtttta 24059831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17838744 - 17838698
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctcctt 47  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  17838744 ccataataatcacattgaaaaaacaaatgatcccttttctcctcctt 17838698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 25135460 - 25135556
Alignment:
Q  145 acaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca-gtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||| |||||||| ||||| |||||||||||| |||| ||||| | || |||||||  | || || |||||||| |||||||||||||||||||||    
T  25135460 acaaatatattaacctttaatggaaccgctttaagccaaaaaaaattatgaaaatcttaaagtaatattagtgtcaaccgctgttaaataagaataa 25135556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36951213 - 36951270
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaag 58  Q
    ||||||| |||||| |  ||||||||||||||||||||||| ||||||||||| ||||    
T  36951213 ccataatgatcacaattaaaaaacaaatgatccctttcctcttccttaccacacaaag 36951270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50693964 - 50693907
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaag 58  Q
    ||||||| |||||| |  ||||||||||||||||||||||| ||||||||||| ||||    
T  50693964 ccataatgatcacaattaaaaaacaaatgatccctttcctcttccttaccacacaaag 50693907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 13026677 - 13026772
Alignment:
Q  103 agattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaa 198  Q
    ||||||||||| ||||  || ||||||||||| || ||||| ||||| ||||| || ||||  |||||||||||| |||| |||||  ||||||||    
T  13026677 agattatccttagtaggtagcctattcagaaaaaggcgccatacaaatatattcacctttagaggaaccgctttaagccacaaaaaacgatcaaaa 13026772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17469334 - 17469284
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttacca 51  Q
    ||||||| |||||| |  ||||||||||||||||||||||| |||||||||    
T  17469334 ccataatgatcacaattaaaaaacaaatgatccctttcctcttccttacca 17469284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29192525 - 29192473
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccaca 53  Q
    ||||||| |||||| || ||||||| ||| ||||||||||| |||||||||||    
T  29192525 ccataatgatcacaatgaaaaaacagatggtccctttcctcttccttaccaca 29192473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3514696 - 3514935
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3514696 ccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattgatagcctcaagaacattcctcttgc 3514795  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  3514796 gaagattatcctttgtagcaagtctattcagaaagaaccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaattgatcaaaatc 3514895  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  3514896 tgcagtgatgttagtgtccaccgctgttaagtaagaataa 3514935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 9819084 - 9819311
Alignment:
Q  13 cattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcct 112  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  9819084 cattggaaaaacaaatgatccttgtcctcctccttaccacataaagcaccacaagaaacattggtagcctcaaggacattcctcttacgaagattatcct 9819183  T
Q  113 ttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgtt 212  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9819184 ttgtagcaagtctattcagaaaaagccgccaaacataaatattgacttttaagggaaccgctttaagccataaaaattgatcaaaatctgcagtgatgtt 9819283  T
Q  213 agtgtccaccgctgttaaataagaataa 240  Q
    |||||||||||||||||| |||||||||    
T  9819284 agtgtccaccgctgttaagtaagaataa 9819311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 23571831 - 23571596
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  23571831 ccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaaggacattcgtcttgc 23571732  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| ||||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||    
T  23571731 gaagattgtcctttgtagcaagtctattcagaaagagacgtcatacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactc 23571632  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    | |||||||||||||||||||||||||||| |||||    
T  23571631 tacagtgatgttagtgtccaccgctgttaagtaaga 23571596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17154017 - 17153778
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  17154017 ccataataatcacattggaaaaacaaatgatccctttcctcctctttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 17153918  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  17153917 gaagattatcctttgtagcaagtctattcataaagagccgccaaataaaaatattaacttttaatggaaccgctttaagccataaaaattgatcaaactc 17153818  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||| |||| ||||| |||||| ||||||| |||||||||    
T  17153817 tgcattgatattagtatccaccactgttaagtaagaataa 17153778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42462732 - 42462970
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| || | || |   |||||||  |||| ||||||| ||| |||||||||||||    
T  42462732 ccataataatcacattgaaaaaacaaatgatctctttcctcctccttatcatacaaggtcgcacaagatgcatttgtagcctgaaggacattcctcttgc 42462831  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||| ||    
T  42462832 gaagattgtcctttgtagcaagtctattcagaaagaaacgccaaacaaaaatgttaacttttaagggagccgttttaagccataaaaattgatcaaactc 42462931  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaata 239  Q
    |||||| |||||  ||||||||| |||||||||||||||    
T  42462932 tgcagtaatgttgatgtccaccgttgttaaataagaata 42462970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 53152295 - 53152132
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  53152295 ccataataatcacattgaaaaaacaaatgatctctttcctcctccttgccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 53152196  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaa 164  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  53152195 gaagattatcctttgtagcaagtcgattctgaaagagcctccaaacaaaaatattaacttttaa 53152132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8595269 - 8595504
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||| |||| || ||  |||||||| |||  ||||||| ||| | ||||||||| |    
T  8595269 ccataataatcacattgaaaaaacaaatggtccctttcctcctccttagcacacaaggccgcacaagaagcatctgtagcctgaaggatattcctcttac 8595368  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||||| ||    
T  8595369 gaagattgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaaaggaaccgctttaagccatagaaattgatcaaactc 8595468  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    |||| |||| ||  ||||||| | |||||| |||||    
T  8595469 tgcaatgatattgatgtccactgatgttaagtaaga 8595504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23603275 - 23603513
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||| |||||||||| ||||||| |||||| |||||||||||||||||||| || ||  ||||||||  ||| ||||| | ||| |||||||||||||    
T  23603275 ccataaaaatcacattgaaaaaacagatgatctctttcctcctccttaccacacaaggccgcacaagaagtatttgtagc-tgaaggacattcctcttgc 23603373  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||| || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  23603374 gaaggttgtccttagtagcaagtctattcagaaagagtcgccaaacaaaaatgttaacttttaaaggaaccgctttaagccataaaaattgatcaaactc 23603473  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
     ||| |||| ||| ||||||||| |||||| |||||||||    
T  23603474 cgcaatgatattattgtccaccgttgttaagtaagaataa 23603513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 48547566 - 48547805
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| || ||  | ||||||||||||| | ||||||| || ||||||||||    
T  48547566 ccataatgatcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagaaacattggaaacctcaaggacgttcctcttgc 48547665  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | || || |||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||| ||||||||||||||| ||| ||    
T  48547666 gcaggttgtcctttgttgcaagtctattcagaaagagacgccagacaaaaatattaacctttaatggaactgctttaagccataaaaattgattaaactc 48547765  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||||||   ||||||||  |||||||||||||||    
T  48547766 tgcagtgatgttgaagtccaccgtcgttaaataagaataa 48547805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 42459452 - 42459278
Alignment:
Q  62 cacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttt 161  Q
    ||||||| || ||| |||||||||| |||||||| ||| | |  || ||||||||||||| |||||||||||| || || ||||||||||| ||||| ||    
T  42459452 cacaagatactttgttagcctcaaggacattccttttgtgcaagttgtcctttgtagcaattctattcagaaaaagacgtcaaacaaaaatgttaacctt 42459353  T
Q  162 taagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||| |||||| | ||| ||||||| ||||| | ||||||| ||||||||||  ||||||||||||||||||||||    
T  42459352 taacggaacctccttaagccataagaattggttaaaatcttcagtgatgttgttgtccaccgctgttaaataaga 42459278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 193
Target Start/End: Original strand, 16664075 - 16664180
Alignment:
Q  88 acattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaa 187  Q
    ||||| || ||||| | |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||   ||||||||    
T  16664075 acatttcttttgcgcaaattatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaa 16664174  T
Q  188 attgat 193  Q
    ||||||    
T  16664175 attgat 16664180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 52196402 - 52196490
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||   ||||||||||||||    
T  52196402 attatcttttgtagcaagtctattcagaaagaggcgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataaaaattgat 52196490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 10754179 - 10754314
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    |||||| ||||||||||||||||||| |||||| ||||||||||| || ||||| || || |||||||||||   ||| |  |||||||| |||||| ||    
T  10754179 attatcttttgtagcaagtctattcataaagagacgccaaacaaagatgttaaccttcaacggaaccgctttcaaccaaaggaattgatcgaaatcttca 10754278  T
Q  205 gtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |  |||||||| |||||||||||||| || ||||||    
T  10754279 gaaatgttagtatccaccgctgttaagtacgaataa 10754314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 240
Target Start/End: Complemental strand, 39632938 - 39632803
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || |||||||||||   |||||| || ||||  || ||| ||    
T  39632938 attatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaaccgctttcaaccataagaaatgattgaattcttca 39632839  T
Q  205 gtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |  |||||||| ||||||||| |||| || ||||||    
T  39632838 gaaatgttagtatccaccgcttttaagtacgaataa 39632803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16663988 - 16664045
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaag 58  Q
    ||||||| |||||| |  ||||||||||||||||||||||| ||||||||||| ||||    
T  16663988 ccataatgatcacaattaaaaaacaaatgatccctttcctcttccttaccacacaaag 16664045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10754075 - 10754127
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccaca 53  Q
    ||||||| ||||||  | ||||||| ||||||||||||||| |||||||||||    
T  10754075 ccataatgatcacaaagaaaaaacagatgatccctttcctcttccttaccaca 10754127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39633042 - 39632990
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccaca 53  Q
    |||||||  ||||| || ||||||| ||||||||||||||| |||||||||||    
T  39633042 ccataatggtcacaatgaaaaaacagatgatccctttcctcttccttaccaca 39632990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18295606 - 18295367
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  18295606 ccataataatcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtaacctctagaacattcctcttgc 18295507  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||     
T  18295506 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaattgatcaaaata 18295407  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  18295406 tgcagtgatgttagtatccaccgctgttaaataagaataa 18295367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 2894261 - 2894488
Alignment:
Q  13 cattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcct 112  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||||||||    
T  2894261 cattggaaaaacaaatgatccatgtcctcctcgttaccacataaagcaccacaagaaacattggttgcctcaaggatattcctcttacgaagattatcct 2894360  T
Q  113 ttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgtt 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  2894361 ttgtagcaagtctattcagaaaaagccgccaaacaaaaatattaacttttaagggaaccgctttaagccatagaaattgatcaaaatctgcagtgatgtt 2894460  T
Q  213 agtgtccaccgctgttaaataagaataa 240  Q
    ||| |||||||||||||| |||||||||    
T  2894461 agtatccaccgctgttaagtaagaataa 2894488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 667287 - 667512
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||| |||||||| ||||||||||  |||||||||||||||||||| ||          ||||||||||| ||||||||||| |||||||||||||    
T  667287 ccataatagtcacattgaaaaaacaaatagtccctttcctcctccttaccgca----------caagaaacatttgtagcctcaagtacattcctcttgc 667376  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||| ||| ||    
T  667377 gaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacctttaagggaaccactttaagccataaaaattgattaaactc 667476  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||||||||||||  ||||||||||||||||||||||    
T  667477 tgcagtgatgttgatgtccaccgctgttaaataaga 667512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28605097 - 28604858
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||||||||||||||| || |||||||||||||||||||| || ||  | ||||| ||||||| | |||||||||| |||||||| |    
T  28605097 ccataatgatcacattggaaaaacaaatggtctctttcctcctccttaccacacaaggccgcgcaagacacattggaaacctcaagaacgttcctcttac 28604998  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | || || |||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| || |||| |||| ||||||||||||||| ||| ||    
T  28604997 gcaggttgtcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaacctttaatgggaccggtttaagccataaaaattgattaaactc 28604898  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||| ||   ||||||||| |||||||||||||||    
T  28604897 tgcagtgatattgaagtccaccgccgttaaataagaataa 28604858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 7218557 - 7218325
Alignment:
Q  4 taataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaa 103  Q
    |||| ||||||||||||||| ||||| || |||||||||||||||||||| || ||  ||||| | |||||| |||||||||  |||||||| || || |    
T  7218557 taatgatcacattggaaaaataaatggtctctttcctcctccttaccacacaaggccgcacaatatacattgttagcctcaaagacattccttttacgca 7218458  T
Q  104 gattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgc 203  Q
     |||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| |||||||| ||| ||||||||||||||| ||||||| |    
T  7218457 aattatcctttgtagcaagtctattcagaaaaagacgccaaacaaaaatgttaacctttaacggaaccgccttaagccataaaaattgatgaaaatcttc 7218358  T
Q  204 agtgatgttagtgtccaccgctgttaaataaga 236  Q
    | || || |  | ||||||||||||||| ||||    
T  7218357 attggtggtgttatccaccgctgttaaacaaga 7218325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 239
Target Start/End: Original strand, 17228029 - 17228186
Alignment:
Q  82 tcaagaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggcc 181  Q
    ||||| |||||||| ||||| | ||| |||||||||||||||||||| |||||||| ||||| ||||| || || || ||||| ||||| |||||| |||    
T  17228029 tcaaggacattccttttgcgcaaattgtcctttgtagcaagtctatttagaaagagacgccagacaaatatgttcacatttaacggaactgctttaagcc 17228128  T
Q  182 ataaaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataagaata 239  Q
    | ||||| |||| ||| ||| ||||||| |||||||| ||||||||||||||||||||    
T  17228129 acaaaaaatgatgaaactcttcagtgattttagtgtcaaccgctgttaaataagaata 17228186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 9759701 - 9759578
Alignment:
Q  13 cattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcct 112  Q
    ||||| ||||||| ||| |||||||| |||||||||||||  |||||  ||||| | |||   || |||||||  |||||||| ||||| ||||||||||    
T  9759701 cattgaaaaaacagatggtccctttcatcctccttaccacgcaaagccgcacaatacacaaaagtggcctcaaagacattccttttgcgcagattatcct 9759602  T
Q  113 ttgtagcaagtctattcagaaaga 136  Q
    ||||||||||||||||| ||||||    
T  9759601 ttgtagcaagtctattcggaaaga 9759578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 5391623 - 5391535
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    |||||| ||||| ||||||||||||||||| |  |||||||||||||| ||||| || || ||| |||||||   ||||||||||||||    
T  5391623 attatcttttgttgcaagtctattcagaaataagcgccaaacaaaaatgttaaccttcaacggagccgctttcaaccataaaaattgat 5391535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26077936 - 26077697
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26077936 ccataatattcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattccttttgc 26077837  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  26077836 gaagattgtcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaattgatcaaaatc 26077737  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  26077736 tgcagtgatgttagtgtccaccgctgttaagaaagaataa 26077697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 31423431 - 31423212
Alignment:
Q  21 aaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcctttgtagca 120  Q
    ||||||||| ||||||||||||||||||||||| || ||  | ||||||||||||||| | ||||| || |||||||||||||| || | |||||| |||    
T  31423431 aaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagaaacattggtaccttcaaggacgttcctcttgcgaaggttgttctttgttgca 31423332  T
Q  121 agtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgttagtgtcca 220  Q
    ||||||||||||||||| || || |||||||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||   | |||    
T  31423331 agtctattcagaaagagacgtcagacaaaaatattaacctttaagggaaccgctttaagccataaaaattgattaaactctgcagtgatgttgaagccca 31423232  T
Q  221 ccgctgttaaataagaataa 240  Q
    ||| ||||||||||||||||    
T  31423231 ccgttgttaaataagaataa 31423212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 29532370 - 29532561
Alignment:
Q  2 cataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcg 101  Q
    |||||| ||| ||||| || ||||||||||||||||||||||||||| |||| || ||  ||||||| | |||  ||||   ||| |||||||| ||||     
T  29532370 cataatgatcgcattgaaagaacaaatgatccctttcctcctccttatcacacaaggccacacaagatatattattagctggaaggacattccttttgct 29532469  T
Q  102 aagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
     | ||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||| |||||||||||||||    
T  29532470 taaattgtcctttgtagcaagtctattcagaaagagacgccagacaaaaatgttaacatttaatggtaccgctttaagccataaaaattgat 29532561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 10801786 - 10801669
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||||   ||||||||||||||  |||||| ||    
T  10801786 attatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgattgaaatcttca 10801687  T
Q  205 gtgatgttagtgtccacc 222  Q
    |  ||||||| |||||||    
T  10801686 gcaatgttagagtccacc 10801669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 2959800 - 2959709
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacatt 92  Q
    ||||||||||||||||| || || ||||| || || |||||||||||||||||||||||||||||| |||| ||||||||||| || |||||    
T  2959800 ccataataatcacattgaaagaataaatggtctctgtcctcctccttaccacataaagcaccacaaaaaacgttggtagcctcgaggacatt 2959709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 26390452 - 26390260
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||| ||||| || ||||||||  ||||||| |||||||||||||| || ||   | |||| | |||  |||||  ||| ||||||||  |||    
T  26390452 ccataatgatcgcattgaaagaacaaatggcccctttcgtcctccttaccacacaaggccatataagacatattattagccggaaggacattccttatgc 26390353  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
      | ||| ||| ||||||||||||||||||||||||| ||||| |||||||| ||||| ||||| || |||||  || |||||||||||||||    
T  26390352 ttaaattgtccgttgtagcaagtctattcagaaagagacgccagacaaaaatgttaacctttaatggtaccgccgtaagccataaaaattgat 26390260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12121598 - 12121837
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  12121598 ccataataatcgcattggaaaaacaaatgatccatttcctcctccttaccacataaagcaccacaagaaacattggtatcctctagaacattcctcttgc 12121697  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||     
T  12121698 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggtaccgctttaagccataaaaattgatcaaaatt 12121797  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  12121798 tgcagtgatgttagtctccaccgctgttaaataagaataa 12121837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24819709 - 24819948
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |    
T  24819709 ccataatagtcgcattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacgttggtagcctcaaggacgttcctcttac 24819808  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  24819809 gaagattatcctttgtagcaagtctattcagaaaaagccgccaaacaaaaatattgacttttaagggaaccgctttaagccataaaaattgatcaaaatc 24819908  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  24819909 tgcagtgatgttagtgtccactgctgttaagtaagaataa 24819948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 40891974 - 40891739
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || || ||||||||||||| |||||||||||| |||||||||||||    
T  40891974 ccataataatcacattggaaaaacaaatggtccatttcctcctccttaccacacaaggccccacaagaaacataggtagcctcaaggacattcctcttgc 40891875  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||    
T  40891874 gaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactc 40891775  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    |||||||||||||||||||||||||||||| |||||    
T  40891774 tgcagtgatgttagtgtccaccgctgttaagtaaga 40891739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37075800 - 37075571
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  37075800 ccataataatcacattgaaaaaacaaatgatccctttcctcctccttgccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 37075701  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  37075700 gaagattatcctttgtagcaagtcgattctgaaagagcctccaaacaaaaatattaacttttaaaggaaccgctttaagccataaaaattgatcaaactc 37075601  T
Q  201 tgcagtgatgttagtgtccaccgctgttaa 230  Q
    ||||||||| ||||| ||||||| ||||||    
T  37075600 tgcagtgatattagtatccaccgttgttaa 37075571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 36575580 - 36575394
Alignment:
Q  13 cattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  36575580 cattggaaaaacaaatgatccctttcctcctccttaccacatagagcaccacaagaaacattggtagcctcaaggacattcctcttacgaagattatcct 36575481  T
Q  113 ttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaat 199  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36575480 ttgtagcaagtctattcagaaaaagccgccaaacaaaaatattgacttttaagggaaccgctttaagccataaaaattgatcaaaat 36575394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9403335 - 9403103
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  9403335 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 9403236  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||| ||||||         |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  9403235 gaagattatcctttgtagcaagtcgattcag-------gtccaaacaaaaatattaacttttaaaggaaccgctttaagccataaaaattgatcaaactc 9403143  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||| ||||| ||||||| |||||| |||||||||    
T  9403142 tgcagtgatattagtatccaccgttgttaagtaagaataa 9403103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 586796 - 587025
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||  |||||||||||||||||||| |||||||| || |    
T  586796 ccataataatcacattgaaaaaacaaatgatccctttcctcctccttaccacataaggccccacttgaaacattggtagcctcaaggacattccttttac 586895  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||  ||||||| ||    
T  586896 gaagattgtcctttgtagcaagtctattcaaaaagagacgccaaacaaaaatattaacctttaagggaaccgctttaagccataaaaaacgatcaaactc 586995  T
Q  201 tgcagtgatgttagtgtccaccgctgttaa 230  Q
    |||||||||||||| ||| |||||||||||    
T  586996 tgcagtgatgttagagtcgaccgctgttaa 587025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34981859 - 34982098
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| || || ||||| || ||||||||||||||||||||||||||||||||  |||| ||||||||||| || |||||||||||||    
T  34981859 ccataataatcacattgaaagaataaatggtctctttcctcctccttaccacataaagcaccacagaaaacgttggtagcctcgaggacattcctcttgc 34981958  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||| || ||||||||| |||||||||| |||||||| ||    
T  34981959 gaagattatcctttgtagcaaggcgattcagaaagagcctccaaacaaaaatattaacctttaaagggaccgctttaagccataaaaactgatcaaactc 34982058  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||| |||| ||||| ||||||| |||||| |||||||||    
T  34982059 tgcattgatattagtatccaccgttgttaagtaagaataa 34982098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 20705702 - 20705468
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||||||||||||||| || |||||||||||||||||||| |||||  ||||||  ||||| | | |||||||||| || |||||||    
T  20705702 ccataatgatcacattggaaaaacaaatggtctctttcctcctccttaccacacaaagccgcacaagccacattagaaacctcaagaacgtttctcttgc 20705603  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| || || || || | |||| ||||||||||||||  ||| ||    
T  20705602 gcagattatcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaaccttcaatgggactggtttaagccataaaaattgagtaaactc 20705503  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataag 235  Q
    ||||||||| ||   ||||||||| ||||||||||    
T  20705502 tgcagtgatattgaagtccaccgccgttaaataag 20705468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 20873746 - 20873512
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||||||||||||||| || |||||||||||||||||||| |||||  ||||||  ||||| | | |||||||||| || |||||||    
T  20873746 ccataatgatcacattggaaaaacaaatggtctctttcctcctccttaccacacaaagccgcacaagccacattagaaacctcaagaacgtttctcttgc 20873647  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| || || || || | |||| ||||||||||||||  ||| ||    
T  20873646 gcagattatcctttgttgcaagtctattcagaaaaagacgccatacaaaaatattaaccttcaatgggactggtttaagccataaaaattgagtaaactc 20873547  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataag 235  Q
    ||||||||| ||   ||||||||| ||||||||||    
T  20873546 tgcagtgatattgaagtccaccgccgttaaataag 20873512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 27987675 - 27987539
Alignment:
Q  103 agattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctg 202  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||| |||| ||||| |||| ||||||      
T  27987675 agattatcctttgtagcaagtctattcagaaagagacgccatacaaaaatattaacctttaacggaaccgctttatgccacaaaaaatgatgaaaatcct 27987576  T
Q  203 cagtgatgttagtgtccaccgctgttaaataagaata 239  Q
    |||| || ||||| || ||||||||||| ||||||||    
T  27987575 cagtaatattagtatcaaccgctgttaagtaagaata 27987539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 18815519 - 18815364
Alignment:
Q  85 agaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccata 184  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| ||||| |||||||||||| |||| |    
T  18815519 agaacattcctcttcctcagattatcctttgtagcaagtctattcagaaagagacgctagacaaatatattaacctttaacggaaccgctttatgccaca 18815420  T
Q  185 aaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||| |||| ||||||  |||| || |||| ||| ||||||||||| |||||||||    
T  18815419 aaaaatgatgaaaatcctcagtaatattagggtcaaccgctgttaagtaagaataa 18815364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 8457310 - 8457156
Alignment:
Q  85 agaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccata 184  Q
    |||||||| ||||| || |||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||||||| ||||      
T  8457310 agaacatttctcttccgcagataatcctttgtatcaagtctattcagaaagagacgccagacaaaaatattaacctttaacgaaaccgctttatgccacg 8457211  T
Q  185 aaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataagaata 239  Q
    |||| |||| ||||||  |||| |||||| |||| |||| |||||| ||||||||    
T  8457210 aaaaatgatgaaaatcctcagtaatgttattgtcaaccgttgttaagtaagaata 8457156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 47548962 - 47549079
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||||   ||||||||||||||  |||||| ||    
T  47548962 attatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgattgaaatcttca 47549061  T
Q  205 gtgatgttagtgtccacc 222  Q
    |  ||||||| |||||||    
T  47549062 gcaatgttagagtccacc 47549079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 47553405 - 47553522
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||||   ||||||||||||||  |||||| ||    
T  47553405 attatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgattgaaatcttca 47553504  T
Q  205 gtgatgttagtgtccacc 222  Q
    |  ||||||| |||||||    
T  47553505 gcaatgttagagtccacc 47553522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 27868912 - 27869099
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| |||||| || ||||||||||| ||| | ||||| ||||||||||| || |   |||| |  |||  ||| |  |||| |||||||||  |||    
T  27868912 ccataatgatcacaatgaaaaaacaaatggtccatatcctcttccttaccacacaaggtcgcacatgccacaagggtcggatcaataacattccttctgc 27869011  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaa 188  Q
    | | ||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||   |||||||||  ||||||||||    
T  27869012 gcaaattatcctttgtagcaagtctattcagaaagagacgccaaacaaatatgttaacctttaacataaccgcttttagccataaaaa 27869099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 22865854 - 22865766
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||||   ||||||||||||||    
T  22865854 attatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgat 22865766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 5196663 - 5196834
Alignment:
Q  19 aaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcctttgtag 118  Q
    ||||| ||||| ||||| |||||   || ||||||||| ||  ||||||| |||| || | | ||||| ||||  |||||||  | ||||||||||||||    
T  5196663 aaaaataaatggtccctgtcctctaactcaccacataaggccgcacaagacacatgggaaacatcaagcacatatctcttgcacaaattatcctttgtag 5196762  T
Q  119 caagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaatt 190  Q
    |||||||||| |||||||| || || | ||| ||||| |||||||| | || ||| ||| |||| |||||||    
T  5196763 caagtctatttagaaagagtcgtcagataaagatattcacttttaacgaaatcgccttaagccacaaaaatt 5196834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 45649371 - 45649314
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaag 58  Q
    ||||||| |||||| |  |||||||| |||||||||||||| ||||||||||| ||||    
T  45649371 ccataatgatcacaattaaaaaacaagtgatccctttcctcttccttaccacacaaag 45649314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 1761072 - 1761124
Alignment:
Q  103 agattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatatt 155  Q
    ||||||||||| ||||| | |||||||| ||| || |||||||||||||||||    
T  1761072 agattatccttggtagctaatctattcataaacagacgccaaacaaaaatatt 1761124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22865958 - 22865906
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccaca 53  Q
    ||||||| ||||||   |||||||| ||||||||||||||| |||||||||||    
T  22865958 ccataatgatcacaagtgaaaaacagatgatccctttcctcttccttaccaca 22865906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 27029976 - 27030203
Alignment:
Q  13 cattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcct 112  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  27029976 cattggaaaaacaaatgatctctttcctcctccttaccacatagagcaccacaagaaacattggtagcctcaaggacattcctcttacgaagattatcct 27030075  T
Q  113 ttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgtt 212  Q
    || ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27030076 ttatagcaagtctattcaaaaaaagccgccaaacaaaaatattgacttttaagggaaccgctttaagccataaaaattgatcaaaatctgcagtgatgtt 27030175  T
Q  213 agtgtccaccgctgttaaataagaataa 240  Q
    |||||||||||||||||| |||||||||    
T  27030176 agtgtccaccgctgttaagtaagaataa 27030203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 41343018 - 41342783
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||    
T  41343018 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaggctccacaagaaacattggtagcctcaaggacattcctcttgc 41342919  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||    
T  41342918 gaagattgtcctttgtagcaaatctattcagaaagagacgccaaacaaaaatgttaacttttaaaggaaccgctttaagccataaaaattgatcaaactc 41342819  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||||||||||||||| |||||||||||||| |||||    
T  41342818 tgcagtgatgttagtatccaccgctgttaagtaaga 41342783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 10003955 - 10004182
Alignment:
Q  13 cattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgcgaagattatcct 112  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||  |||||| |||| |||||||||||||    
T  10003955 cattcgaaaaacaaatgatccctttcctcctccttaccacaaagagcaccacaagaaacattggtagcctcaaagacattcttcttacgaagattatcct 10004054  T
Q  113 ttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgcagtgatgtt 212  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  10004055 ttgtagcaagtctattcagaaagagccgccaagcaaaaatattgacttttaaaggaaccgctttaagccataaaaattgatcaaaatctgcagtgatgtt 10004154  T
Q  213 agtgtccaccgctgttaaataagaataa 240  Q
    |||||||||||||||||| |||||||||    
T  10004155 agtgtccaccgctgttaagtaagaataa 10004182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 49369779 - 49370014
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||  |||||||| |||  | ||||| ||| |||||||||||||    
T  49369779 ccataataatcacattgaaaaaacaaatgatccctttcctcctccttaccacacaaggccgcacaagaagcatctgcagcctaaaggacattcctcttgc 49369878  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||    
T  49369879 gaagattgtcctttgtagcaagtctattcagaaagagacgccaaaaaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactc 49369978  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||||||||| || |||||||||| ||||||||||||    
T  49369979 tgcagtgatattggtgtccaccgttgttaaataaga 49370014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 24545183 - 24545091
Alignment:
Q  85 agaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgcttta 177  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||| |||||    
T  24545183 agaacatttctctttcgaagattatcctttgtagcaagtctgttcagaaagagacgccagacaaaaatattaacttttaacggaaccacttta 24545091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 28520966 - 28520809
Alignment:
Q  82 tcaagaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggcc 181  Q
    ||||||||||||||| | |  | |||||||| |||||||||||||||||| ||||| ||||| ||||| ||||| || ||||| | |||||||||| |||    
T  28520966 tcaagaacattcctcatacacaaattatcctctgtagcaagtctattcaggaagagacgccatacaaatatattcacctttaacgaaaccgctttaagcc 28520867  T
Q  182 ataaaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataagaata 239  Q
    | |||||||||| ||| ||| || |||||||| |||| |||  |||||||||||||||    
T  28520866 acaaaaattgatgaaactcttcaatgatgttaatgtcaaccattgttaaataagaata 28520809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 26996079 - 26996214
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    ||||||||||| | ||||||||||||||||||| ||||| |||||||||||||| ||||| |||| ||||||   ||| ||||| |||| ||||||  ||    
T  26996079 attatcctttgcaccaagtctattcagaaagagacgccagacaaaaatattaacctttaacggaatcgctttcttccacaaaaaatgatgaaaatcctca 26996178  T
Q  205 gtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    || || ||| | || |||| |||||| |||||||||    
T  26996179 gtaatattattatcaaccgttgttaagtaagaataa 26996214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 37668969 - 37669104
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatctgca 204  Q
    |||||| |||||| ||||||||||||||||||| |||||||||||||| ||||| || || ||||||  |||   |||||| || ||||  || ||| ||    
T  37668969 attatcttttgtatcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaaccattttcaaccataagaaatgattgaattcttca 37669068  T
Q  205 gtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |  |||||||| ||||||||| |||| || ||||||    
T  37669069 gaaatgttagtatccaccgctcttaagtacgaataa 37669104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5557279 - 5557330
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccac 52  Q
    ||||||| ||||||||  ||||||||||| ||||||||||||||||||||||    
T  5557279 ccataatgatcacattaaaaaaacaaatggtccctttcctcctccttaccac 5557330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 48710109 - 48710189
Alignment:
Q  102 aagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggcca 182  Q
    |||||||||||| |||| |||||||||||  ||||| ||||||||||||| ||| || || || ||||| |||||| ||||    
T  48710109 aagattatccttggtaggaagtctattcaagaagagtcgccaaacaaaaagattcaccttcaaaggaactgctttaagcca 48710189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 74310 - 74545
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || || ||||||||||||| |||||||||||| |||||||||||||    
T  74310 ccataataatcacattggaaaaacaaatggtccatttcctcctccttaccacacaaggccccacaagaaacataggtagcctcaaggacattcctcttgc 74409  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||    
T  74410 gaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacttttaagggaaccgctttaagccataaaaattgatcaaactc 74509  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    |||||||||||||||||||||||||||||| |||||    
T  74510 tgcagtgatgttagtgtccaccgctgttaagtaaga 74545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5825179 - 5824940
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  5825179 ccataataatcacatcgaaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 5825080  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||    
T  5825079 gaagattatcctttgtagcaagtcgattcagaaagagcctccaaacaaaaatattaacttttaaagggaccgctttaagccataaaaattgatcaaactc 5824980  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||  ||||| ||||||| |||||| |||||||||    
T  5824979 tgcagtgagattagtatccaccgttgttaagtaagaataa 5824940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 6678786 - 6678553
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||    
T  6678786 ccataataatcacattgaaaaaacaaatgatcactttcctcctccttaccatataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 6678687  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||  ||| ||| |||||||||||| ||||||||||||||||||| ||    
T  6678686 gaagattatcctttgtagcaagtcgattcagaaagagcctccaaacaaaaatatt--cttctaaaggaaccgctttaagccataaaaattgatcaaactc 6678589  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||||||||| ||||| ||||||| |||||| |||||    
T  6678588 tgcagtgatattagtatccaccgttgttaagtaaga 6678553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11266037 - 11266272
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| || ||  | ||||||||||| ||||||||||| |||||||||||||    
T  11266037 ccataatagtcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagaaacattagtagcctcaaggacattcctcttgc 11266136  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||    
T  11266137 gaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatattaacttttaaaggaaccgctttaagccataaaaattgaccaaactc 11266236  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    ||||||||||||  ||||||||||||||| ||||||    
T  11266237 tgcagtgatgttgttgtccaccgctgttagataaga 11266272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27891710 - 27891921
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| || ||  | ||||| ||||||| | ||| ||| || ||||||||||    
T  27891710 ccataatgatcacattgaaaaaacaaatggtccctttcctcctccttaccacacaaggccgcgcaagacacattggaaacctgaaggacgttcctcttgc 27891809  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | || || |||||||| ||||||||||||||||||||  |||| |||||||||||||| ||||| |||||||||||| ||||||||||||||| ||| ||    
T  27891810 gcaggttgtcctttgttgcaagtctattcagaaagagatgccagacaaaaatattaacctttaatggaaccgctttaagccataaaaattgattaaactc 27891909  T
Q  201 tgcagtgatgtt 212  Q
    ||||||||||||    
T  27891910 tgcagtgatgtt 27891921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10462347 - 10462243
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||    
T  10462347 ccataataatcacattggaaaaacaaatgatccctttcctcctccttactacataaagcaccacaaaaaacattggtagcctcgaggacattcctcttgc 10462248  T
Q  101 gaaga 105  Q
    |||||    
T  10462247 gaaga 10462243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31962882 - 31962643
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| |||||| || ||||||||||| ||||| ||||| ||||||||||| || |   |||| |  |||  ||| |  ||||||||||||||  |||    
T  31962882 ccataatgatcacaatgaaaaaacaaatggtccctatcctcttccttaccacacaaggttgcacatgccacaagggtcggatcaagaacattccttctgc 31962783  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | | |||||||||||||||||||||||||||| ||||  |||||||||| || ||||| ||||| |||||| ||||  |||||||||||||| |||||||    
T  31962782 gcaaattatcctttgtagcaagtctattcagatagagatgccaaacaaatatgttaacctttaacggaaccacttttagccataaaaattgagcaaaatc 31962683  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    | ||| ||||||||||||||| || |||||||||||||||    
T  31962682 ttcagagatgttagtgtccactgccgttaaataagaataa 31962643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 29150317 - 29150504
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||  |||||||| ||||| ||||| || |||||||| ||||||||||| || ||  ||||||| |||||| |||||||| || ||||||| ||||    
T  29150317 ccataatggtcacattgaaaaaataaatggtctctttcctcgtccttaccacagaaggccgcacaagatacattgttagcctcagga-cattccttttgc 29150415  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaat 189  Q
    | |  || ||||||||||||||||||||||| || || | |||||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  29150416 gcaagttgtcctttgtagcaagtctattcaggaaaagacaccaaacaaaaatattaacctttaacggaaccgccttaagccataaaaat 29150504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 29322909 - 29322997
Alignment:
Q  105 attatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || || ||||| |||||   ||||||||||||||    
T  29322909 attatcttttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaaccttcaacggaactgctttcaaccataaaaattgat 29322997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 38931886 - 38931973
Alignment:
Q  106 ttatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgat 193  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| || ||||| || |  |||||||||||   ||||||||||||||    
T  38931886 ttatcttttgtagcaagtctattcagaaagagatgccaaacaaatatgttaaccttcagcggaaccgctttcaaccataaaaattgat 38931973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 8896363 - 8896447
Alignment:
Q  106 ttatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaatt 190  Q
    ||||| |||||||||||||||||||||||||| ||||||||||  || ||||| || ||  ||||||||||   |||||||||||    
T  8896363 ttatcttttgtagcaagtctattcagaaagagacgccaaacaactatgttaaccttcaacagaaccgctttcaaccataaaaatt 8896447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8895396 - 8895453
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaag 58  Q
    ||||||| |||||| |  ||||||| ||||||||||||||| ||||||||||| ||||    
T  8895396 ccataatgatcacaattaaaaaacatatgatccctttcctcttccttaccacacaaag 8895453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 58606 - 58367
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    |||||||  |||||||| ||||||||| | ||||||||||||||||||||||| || ||  ||||||||| ||||||||||||||| |||||||||||||    
T  58606 ccataattgtcacattgaaaaaacaaacggtccctttcctcctccttaccacacaaggccgcacaagaaatattggtagcctcaaggacattcctcttgc 58507  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    |||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||| ||    
T  58506 gaaggttgtcctttgtagcaagtctattcagaaagagacgccaaacaaaaatgttaacctttaagggaaccgctttaagccataaaaattgattaaactc 58407  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  58406 tgcagtgatgttgatgtccaccgctgttaaataagaataa 58367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 224936 - 224701
Alignment:
Q  1 ccataataatcacattggaaaaacaaatgatccctttcctcctccttaccacataaagcaccacaagaaacattggtagcctcaagaacattcctcttgc 100  Q
    ||||||| ||||||||||||||| ||||| || |||||||||||||||||||| || ||  ||||| | |||||| |||||||||| |||||||| || |    
T  224936 ccataatgatcacattggaaaaataaatggtctctttcctcctccttaccacacaaggccgcacaatatacattgttagcctcaaggacattccttttac 224837  T
Q  101 gaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccataaaaattgatcaaaatc 200  Q
    | | ||| |||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| |||||||| ||| ||||||||||||||| ||||||    
T  224836 gcaaattgtcctttgtagcaagtctattcagaaaaagacgccaaacaaaaatgttaacctttaacggaaccgccttaagccataaaaattgatgaaaatc 224737  T
Q  201 tgcagtgatgttagtgtccaccgctgttaaataaga 236  Q
    | || ||  | |  ||||||||||||||||| ||||    
T  224736 ttcattggcggtgttgtccaccgctgttaaacaaga 224701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 11161 - 11316
Alignment:
Q  85 agaacattcctcttgcgaagattatcctttgtagcaagtctattcagaaagagccgccaaacaaaaatattaacttttaagggaaccgctttaggccata 184  Q
    |||||||| ||||| || |||||||||||||||| |||||||||||| ||||| |  || ||||| |||||||| ||||| |||||| ||||  |||| |    
T  11161 agaacatttctcttccgcagattatcctttgtagaaagtctattcaggaagagacatcatacaaatatattaacctttaacggaacctctttgtgccaca 11260  T
Q  185 aaaattgatcaaaatctgcagtgatgttagtgtccaccgctgttaaataagaataa 240  Q
    |||| |||| ||||||  |||| || |||||||| || |||||||| |||||||||    
T  11261 aaaaatgatgaaaatcctcagtaatattagtgtcaactgctgttaagtaagaataa 11316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University